Guide to the Human Genome
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Name: C17orf49 Sequence: fasta or formatted (192aa) NCBI GI: 218563737
Description:

hypothetical protein LOC124944 isoform 1

Not currently referenced in the text

Other entries for this name:
alt prot {138aa} hypothetical protein LOC124944 isoform 3
alt prot {172aa} hypothetical protein LOC124944 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         22           2
 C cysteine            1.0          2           1
 D aspartate           6.8         13           2
 E glutamate           5.7         11           1
 F phenylalanine       2.1          4           1
 G glycine             6.8         13           2
 H histidine           1.0          2           1
 I isoleucine          4.2          8           1
 K lysine              8.9         17           2
 L leucine             8.9         17           2
 M methionine          2.1          4           1
 N asparagine          2.1          4           1
 P proline             9.9         19           3
 Q glutamine           2.1          4           1
 R arginine            2.1          4           1
 S serine             10.9         21           4
 T threonine           6.2         12           1
 V valine              6.8         13           2
 W tryptophan          0.5          1           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC124944 isoform 1 
C17orf49              0.884   hypothetical protein LOC124944 isoform 2 
C17orf49              0.644   hypothetical protein LOC124944 isoform 3 
RCOR2                 0.040   REST corepressor 2 
PRRT2                 0.040   proline-rich transmembrane protein 2 
SPEG                  0.037   SPEG complex locus 
FMN1                  0.034   formin 1 
PELP1                 0.034   proline, glutamic acid and leucine rich protein 1 [...
ZFPM1                 0.034   zinc finger protein, multitype 1 
SMN2                  0.034   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.034   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.034   survival of motor neuron 1, telomeric isoform d [Homo...
CREBBP                0.028   CREB binding protein isoform b 
CREBBP                0.028   CREB binding protein isoform a 
NOLC1                 0.028   nucleolar and coiled-body phosphoprotein 1 
PAK6                  0.028   p21-activated kinase 6 
PAK6                  0.028   p21-activated kinase 6 
PAK6                  0.028   p21-activated kinase 6 
TRERF1                0.028   transcriptional regulating factor 1 
ZBTB40                0.028   zinc finger and BTB domain containing 40 
ZBTB40                0.028   zinc finger and BTB domain containing 40 
ARMC5                 0.028   armadillo repeat containing 5 isoform b 
ARMC5                 0.028   armadillo repeat containing 5 isoform a 
WASF1                 0.028   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.028   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.028   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.028   Wiskott-Aldrich syndrome protein family member 1 [Hom...
NACA                  0.028   nascent polypeptide-associated complex alpha subuni...
RCOR1                 0.025   REST corepressor 1 
SEZ6L2                0.025   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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