Guide to the Human Genome
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Name: C1orf114 Sequence: fasta or formatted (508aa) NCBI GI: 10880975
Description:

hypothetical protein LOC57821

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7         19           1
 C cysteine            1.2          6           1
 D aspartate           6.3         32           2
 E glutamate          14.0         71           4
 F phenylalanine       3.1         16           2
 G glycine             2.4         12           1
 H histidine           2.0         10           2
 I isoleucine          4.1         21           2
 K lysine             10.2         52           3
 L leucine             8.5         43           2
 M methionine          2.2         11           1
 N asparagine          6.3         32           2
 P proline             3.9         20           2
 Q glutamine           6.7         34           2
 R arginine            7.9         40           2
 S serine              7.9         40           2
 T threonine           4.1         21           3
 V valine              3.3         17           1
 W tryptophan          0.8          4           1
 Y tyrosine            1.4          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC57821 
LOC100133599          0.046   PREDICTED: hypothetical protein 
MAP9                  0.046   aster-associated protein 
LOC283685             0.043   PREDICTED: golgi autoantigen, golgin subfamily a-li...
GIGYF2                0.040   GRB10 interacting GYF protein 2 isoform c 
GIGYF2                0.040   GRB10 interacting GYF protein 2 isoform a 
GIGYF2                0.040   GRB10 interacting GYF protein 2 isoform b 
GIGYF2                0.040   GRB10 interacting GYF protein 2 isoform b 
TCHH                  0.040   trichohyalin 
LOC283685             0.039   PREDICTED: golgi autoantigen, golgin subfamily a-li...
CCDC34                0.038   coiled-coil domain containing 34 isoform 1 
LOC100133599          0.037   PREDICTED: hypothetical protein 
INCENP                0.037   inner centromere protein antigens 135/155kDa isofor...
INCENP                0.037   inner centromere protein antigens 135/155kDa isofor...
LOC283767             0.036   golgi autoantigen, golgin subfamily a-like 
LOC100133220          0.036   PREDICTED: hypothetical protein 
LOC645202             0.034   PREDICTED: hypothetical protein LOC645202 
LOC727832             0.034   golgi autoantigen, golgin subfamily a-like 
LOC100286959          0.033   PREDICTED: hypothetical protein XP_002343921 
LOC100133758          0.033   PREDICTED: hypothetical protein, partial 
GOLGA6D               0.032   golgi autoantigen, golgin subfamily a, 6D 
LOC651807             0.032   PREDICTED: hypothetical protein 
GOLGA6C               0.032   PREDICTED: golgi autoantigen, golgin subfamily a, 6C...
CCDC19                0.032   nasopharyngeal epithelium specific protein 1 
BAZ2B                 0.032   bromodomain adjacent to zinc finger domain, 2B [Homo...
LOC100294088          0.031   PREDICTED: hypothetical protein, partial 
UBXN4                 0.031   UBX domain containing 2 
LOC440243             0.030   PREDICTED: Putative golgin subfamily A member 6-lik...
RNF20                 0.030   ring finger protein 20 
GOLGA6B               0.030   golgi autoantigen, golgin subfamily a, 6B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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