Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: C17orf49 Sequence: fasta or formatted (172aa) NCBI GI: 52856421
Description:

hypothetical protein LOC124944 isoform 2

Not currently referenced in the text

Other entries for this name:
alt prot {192aa} hypothetical protein LOC124944 isoform 1
alt prot {138aa} hypothetical protein LOC124944 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.8         22           2
 C cysteine            0.6          1           1
 D aspartate           5.8         10           2
 E glutamate           6.4         11           1
 F phenylalanine       2.3          4           1
 G glycine             7.0         12           2
 H histidine           1.2          2           1
 I isoleucine          4.7          8           1
 K lysine              9.9         17           2
 L leucine             6.4         11           1
 M methionine          1.7          3           1
 N asparagine          2.3          4           1
 P proline             9.9         17           3
 Q glutamine           2.3          4           1
 R arginine            2.3          4           1
 S serine              9.9         17           4
 T threonine           5.8         10           1
 V valine              7.6         13           2
 W tryptophan          0.6          1           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC124944 isoform 2 
C17orf49              0.994   hypothetical protein LOC124944 isoform 1 
C17orf49              0.727   hypothetical protein LOC124944 isoform 3 
RCOR2                 0.044   REST corepressor 2 
SPEG                  0.041   SPEG complex locus 
FMN1                  0.038   formin 1 
PELP1                 0.038   proline, glutamic acid and leucine rich protein 1 [...
ZFPM1                 0.038   zinc finger protein, multitype 1 
SMN2                  0.038   survival of motor neuron 2, centromeric isoform d [H...
SMN2                  0.038   survival of motor neuron 2, centromeric isoform a [H...
SMN1                  0.038   survival of motor neuron 1, telomeric isoform d [Homo...
CREBBP                0.032   CREB binding protein isoform b 
CREBBP                0.032   CREB binding protein isoform a 
PRRT2                 0.032   proline-rich transmembrane protein 2 
NOLC1                 0.032   nucleolar and coiled-body phosphoprotein 1 
PAK6                  0.032   p21-activated kinase 6 
PAK6                  0.032   p21-activated kinase 6 
PAK6                  0.032   p21-activated kinase 6 
TRERF1                0.032   transcriptional regulating factor 1 
ARMC5                 0.032   armadillo repeat containing 5 isoform b 
ARMC5                 0.032   armadillo repeat containing 5 isoform a 
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.032   Wiskott-Aldrich syndrome protein family member 1 [Hom...
NACA                  0.032   nascent polypeptide-associated complex alpha subuni...
RCOR1                 0.029   REST corepressor 1 
SEZ6L2                0.029   seizure related 6 homolog (mouse)-like 2 isoform 2 ...
RXRB                  0.029   retinoid X receptor, beta 
MICALCL               0.029   MICAL C-terminal like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press