Guide to the Human Genome
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Name: PCYT1B Sequence: fasta or formatted (369aa) NCBI GI: 21361202
Description:

choline phosphate cytidylyltransferase 1 beta isoform 1

Referenced in:

Lipid Metabolism

Other entries for this name:
alt prot [351aa] choline phosphate cytidylyltransferase 1 beta isoform 2
alt prot [330aa] choline phosphate cytidylyltransferase 1 beta isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         25           2
 C cysteine            1.4          5           1
 D aspartate           6.0         22           2
 E glutamate           8.9         33           2
 F phenylalanine       4.6         17           1
 G glycine             3.8         14           1
 H histidine           2.7         10           1
 I isoleucine          4.3         16           2
 K lysine              6.5         24           1
 L leucine             6.2         23           2
 M methionine          2.4          9           1
 N asparagine          3.0         11           1
 P proline             7.3         27           2
 Q glutamine           3.8         14           1
 R arginine            6.8         25           2
 S serine              9.8         36           2
 T threonine           6.2         23           2
 V valine              5.7         21           2
 W tryptophan          1.1          4           1
 Y tyrosine            2.7         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   choline phosphate cytidylyltransferase 1 beta isofor... 
PCYT1B                0.894   choline phosphate cytidylyltransferase 1 beta isofo...
PCYT1B                0.873   choline phosphate cytidylyltransferase 1 beta isofo...
PCYT1A                0.648   choline phosphate cytidylyltransferase 1 alpha [Homo...
PCYT2                 0.109   phosphate cytidylyltransferase 2, ethanolamine 
OLFML2A               0.017   olfactomedin-like 2A 
SFRS12                0.017   splicing factor, arginine/serine-rich 12 isoform a ...
SFRS12                0.017   splicing factor, arginine/serine-rich 12 isoform b [...
SMC2                  0.012   structural maintenance of chromosomes 2 
SMC2                  0.012   structural maintenance of chromosomes 2 
SMC2                  0.012   structural maintenance of chromosomes 2 
LOC284297             0.011   hypothetical protein LOC284297 
C17orf49              0.011   hypothetical protein LOC124944 isoform 1 
C17orf49              0.011   hypothetical protein LOC124944 isoform 2 
CNKSR1                0.011   connector enhancer of kinase suppressor of Ras 1 [H...
LOC727832             0.011   golgi autoantigen, golgin subfamily a-like 
CEP290                0.011   centrosomal protein 290kDa 
SYNPO2                0.011   synaptopodin 2 isoform c 
SYNPO2                0.011   synaptopodin 2 isoform b 
SYNPO2                0.011   synaptopodin 2 isoform a 
C1orf114              0.011   hypothetical protein LOC57821 
MUC16                 0.011   mucin 16 
POLR2A                0.011   DNA-directed RNA polymerase II A 
SORBS3                0.011   sorbin and SH3 domain containing 3 isoform 1 
IRS2                  0.011   insulin receptor substrate 2 
C17orf49              0.010   hypothetical protein LOC124944 isoform 3 
MAST3                 0.010   microtubule associated serine/threonine kinase 3 [H...
RGP1                  0.010   RGP1 retrograde golgi transport homolog 
SOX4                  0.010   SRY (sex determining region Y)-box 4 
TSGA10                0.010   testis specific, 10 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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