Guide to the Human Genome
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Name: GNB5 Sequence: fasta or formatted (395aa) NCBI GI: 20336270
Description:

guanine nucleotide-binding protein, beta-5 subunit isoform b

Referenced in:

G Proteins
WD Repeat Proteins

Other entries for this name:
alt prot [353aa] guanine nucleotide-binding protein, beta-5 subunit isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         33           2
 C cysteine            4.8         19           1
 D aspartate           6.8         27           2
 E glutamate           5.3         21           3
 F phenylalanine       4.3         17           1
 G glycine             7.1         28           2
 H histidine           2.8         11           1
 I isoleucine          2.8         11           2
 K lysine              6.1         24           3
 L leucine             8.1         32           2
 M methionine          2.8         11           1
 N asparagine          3.5         14           1
 P proline             1.8          7           1
 Q glutamine           3.0         12           2
 R arginine            4.6         18           2
 S serine             10.1         40           3
 T threonine           5.8         23           2
 V valine              7.3         29           1
 W tryptophan          2.0          8           1
 Y tyrosine            2.5         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   guanine nucleotide-binding protein, beta-5 subunit i... 
GNB5                  0.889   guanine nucleotide-binding protein, beta-5 subunit is...
GNB1                  0.441   guanine nucleotide-binding protein, beta-1 subunit [...
GNB4                  0.439   guanine nucleotide-binding protein, beta-4 subunit [...
GNB2                  0.435   guanine nucleotide-binding protein, beta-2 subunit [...
GNB3                  0.434   guanine nucleotide-binding protein, beta-3 subunit [H...
WDR51A                0.126   WD repeat domain 51A isoform 2 
WDR51A                0.126   WD repeat domain 51A isoform 1 
TAF5                  0.116   TBP-associated factor 5 
WDR69                 0.106   WD repeat domain 69 
WDR51A                0.102   WD repeat domain 51A isoform 3 
TBL1X                 0.101   transducin beta-like 1X isoform b 
TBL1X                 0.101   transducin beta-like 1X isoform b 
TBL1X                 0.101   transducin beta-like 1X isoform a 
TBL1X                 0.101   transducin beta-like 1X isoform a 
WDR51B                0.101   WD repeat domain 51B 
WDR5                  0.100   WD repeat domain 5 
WDR5                  0.100   WD repeat domain 5 
TBL1XR1               0.099   transducin (beta)-like 1 X-linked receptor 1 
WDR5B                 0.099   WD repeat domain 5B 
KATNB1                0.099   katanin p80 subunit B 1 
PRPF4                 0.099   PRP4 pre-mRNA processing factor 4 homolog 
TBL1Y                 0.097   transducin beta-like 1Y 
TBL1Y                 0.097   transducin beta-like 1Y 
TBL1Y                 0.097   transducin beta-like 1Y 
PAFAH1B1              0.094   platelet-activating factor acetylhydrolase, isoform I...
TAF5L                 0.094   PCAF associated factor 65 beta isoform a 
WDR38                 0.094   WD repeat domain 38 
WDR33                 0.094   WD repeat domain 33 isoform 1 
SPAG16                0.092   sperm associated antigen 16 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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