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Search of human proteins with 239915985
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239915985 phospholipase A2, group IIA precursor [Homo
sapiens]
(144 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens] 313 4e-86
gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens] 313 4e-86
gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens] 313 4e-86
gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens] 313 4e-86
gi|6912596 phospholipase A2, group IID [Homo sapiens] 154 3e-38
gi|7657461 phospholipase A2, group IIE [Homo sapiens] 145 1e-35
gi|4505853 phospholipase A2, group V precursor [Homo sapiens] 134 2e-32
gi|145553989 phospholipase A2, group IIF [Homo sapiens] 119 1e-27
gi|4505845 phospholipase A2, group X [Homo sapiens] 104 2e-23
gi|4505847 phospholipase A2 group IB [Homo sapiens] 96 8e-21
gi|157743243 phospholipase A2, group IIC [Homo sapiens] 80 8e-16
gi|223029412 otoconin 90 [Homo sapiens] 74 3e-14
gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo ... 40 9e-04
gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo ... 37 0.006
gi|34734064 fibulin 1 isoform B precursor [Homo sapiens] 30 0.54
gi|34734068 fibulin 1 isoform A precursor [Homo sapiens] 30 0.54
gi|34734066 fibulin 1 isoform D [Homo sapiens] 30 0.54
gi|34734062 fibulin 1 isoform C precursor [Homo sapiens] 30 0.54
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 30 0.54
gi|148833508 notch1 preproprotein [Homo sapiens] 30 0.70
gi|54400749 keratin associated protein 5-1 [Homo sapiens] 30 0.70
gi|60279697 keratin associated protein 5-7 [Homo sapiens] 29 1.2
gi|53292629 keratin associated protein 5-11 [Homo sapiens] 29 1.2
gi|239755326 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|239744133 PREDICTED: hypothetical protein [Homo sapiens] 29 1.6
gi|56237021 fibrillin 3 precursor [Homo sapiens] 28 2.0
gi|123173777 keratin associated protein 5-8 [Homo sapiens] 28 2.0
gi|14916475 wingless-type MMTV integration site family, member 3... 28 2.7
gi|61743980 stabilin 2 precursor [Homo sapiens] 28 2.7
gi|60593038 keratin associated protein 5-4 [Homo sapiens] 28 2.7
>gi|239915991 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 313 bits (801), Expect = 4e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
Sbjct: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
Sbjct: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
Query: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
NKTTYNKKYQYYSNKHCRGSTPRC
Sbjct: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
>gi|239915987 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 313 bits (801), Expect = 4e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
Sbjct: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
Sbjct: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
Query: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
NKTTYNKKYQYYSNKHCRGSTPRC
Sbjct: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
>gi|239915985 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 313 bits (801), Expect = 4e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
Sbjct: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
Sbjct: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
Query: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
NKTTYNKKYQYYSNKHCRGSTPRC
Sbjct: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
>gi|4505849 phospholipase A2, group IIA precursor [Homo sapiens]
Length = 144
Score = 313 bits (801), Expect = 4e-86
Identities = 144/144 (100%), Positives = 144/144 (100%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT
Sbjct: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR
Sbjct: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
Query: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
NKTTYNKKYQYYSNKHCRGSTPRC
Sbjct: 121 NKTTYNKKYQYYSNKHCRGSTPRC 144
>gi|6912596 phospholipase A2, group IID [Homo sapiens]
Length = 145
Score = 154 bits (388), Expect = 3e-38
Identities = 68/145 (46%), Positives = 91/145 (62%), Gaps = 1/145 (0%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
M+ LL ++++ G++ G ++N ++M+K TGK LSY YGCHCG+GGRG PKDAT
Sbjct: 1 MELALLCGLVVMAGVIPIQGGILNLNKMVKQVTGKMPILSYWPYGCHCGLGGRGQPKDAT 60
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDS-CRSQLCECDKAAATCFA 119
D CC THDCCY L+ +GC Y+++ S I C+ + S C QLC CDK A C
Sbjct: 61 DWCCQTHDCCYDHLKTQGCSIYKDYYRYNFSQGNIHCSDKGSWCEQQLCACDKEVAFCLK 120
Query: 120 RNKTTYNKKYQYYSNKHCRGSTPRC 144
RN TY K+ ++Y HCRG TP C
Sbjct: 121 RNLDTYQKRLRFYWRPHCRGQTPGC 145
>gi|7657461 phospholipase A2, group IIE [Homo sapiens]
Length = 142
Score = 145 bits (365), Expect = 1e-35
Identities = 70/125 (56%), Positives = 79/125 (63%), Gaps = 1/125 (0%)
Query: 20 GNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGC 79
GNLV F MI+ TGK +AL Y YGC+CG+GG P D TD CC HDCCY RLEK GC
Sbjct: 19 GNLVQFGVMIEKMTGK-SALQYNDYGCYCGIGGSHWPVDQTDWCCHAHDCCYGRLEKLGC 77
Query: 80 GTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRG 139
K Y FS S I CA + +C+ CECDK AA CF RN TYN+KY +Y NK C G
Sbjct: 78 EPKLEKYLFSVSERGIFCAGRTTCQRLTCECDKRAALCFRRNLGTYNRKYAHYPNKLCTG 137
Query: 140 STPRC 144
TP C
Sbjct: 138 PTPPC 142
>gi|4505853 phospholipase A2, group V precursor [Homo sapiens]
Length = 138
Score = 134 bits (338), Expect = 2e-32
Identities = 62/137 (45%), Positives = 80/137 (58%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
MK LL LA + + G L++ MI+ TGK A +YGFYGC+CG GGRG+PKD T
Sbjct: 1 MKGLLPLAWFLACSVPAVQGGLLDLKSMIEKVTGKNALTNYGFYGCYCGWGGRGTPKDGT 60
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFAR 120
D CC HD CY RLE++GC + SYK+ + +TC C LC CD+ C R
Sbjct: 61 DWCCWAHDHCYGRLEEKGCNIRTQSYKYRFAWGVVTCEPGPFCHVNLCACDRKLVYCLKR 120
Query: 121 NKTTYNKKYQYYSNKHC 137
N +YN +YQY+ N C
Sbjct: 121 NLRSYNPQYQYFPNILC 137
>gi|145553989 phospholipase A2, group IIF [Homo sapiens]
Length = 211
Score = 119 bits (297), Expect = 1e-27
Identities = 57/147 (38%), Positives = 81/147 (55%), Gaps = 5/147 (3%)
Query: 1 MKTLLLLAVIMIFGLLQAHGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDAT 60
MK +A++ L AHG+L+N M++ TG+ A LS+ YGC+CG+GGRG PKD
Sbjct: 44 MKKFFTVAILAGSVLSTAHGSLLNLKAMVEAVTGRSAILSFVGYGCYCGLGGRGQPKDEV 103
Query: 61 DRCCVTHDCCYKRLEKRGCGTKFLSYKFS-NSGSRITCA--KQDSCRSQLCECDKAAATC 117
D CC HDCCY+ L +GC Y + + + I C+ + C Q C CDK C
Sbjct: 104 DWCCHAHDCCYQELFDQGCHPYVDHYDHTIENNTEIVCSDLNKTECDKQTCMCDKNMVLC 163
Query: 118 FARNKTTYNKKYQYYSNKHCRGSTPRC 144
TY ++Y+ + N +C+G TP C
Sbjct: 164 LMNQ--TYREEYRGFLNVYCQGPTPNC 188
>gi|4505845 phospholipase A2, group X [Homo sapiens]
Length = 165
Score = 104 bits (260), Expect = 2e-23
Identities = 55/154 (35%), Positives = 80/154 (51%), Gaps = 15/154 (9%)
Query: 4 LLLLAVIMIFGLLQAHGN-----LVNFHR--MIKLT-----TGKEAALSYGFYGCHCGVG 51
LLLL +++ LL G+ ++ HR +++L G ++Y YGC CG+G
Sbjct: 13 LLLLPSLLLLLLLPGPGSGEASRILRVHRRGILELAGTVGCVGPRTPIAYMKYGCFCGLG 72
Query: 52 GRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCA-KQDSCRSQLCEC 110
G G P+DA D CC HDCCY R E+ GC K Y + + C ++ C+ LC+C
Sbjct: 73 GHGQPRDAIDWCCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCGPAENKCQELLCKC 132
Query: 111 DKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC 144
D+ A C A +T YN KY +Y C +P+C
Sbjct: 133 DQEIANCLA--QTEYNLKYLFYPQFLCEPDSPKC 164
>gi|4505847 phospholipase A2 group IB [Homo sapiens]
Length = 148
Score = 96.3 bits (238), Expect = 8e-21
Identities = 57/148 (38%), Positives = 84/148 (56%), Gaps = 16/148 (10%)
Query: 4 LLLLAVIMIFGLLQAHGN---LVNFHRMIK-LTTGKEAALSYGFYGCHCGVGGRGSPKDA 59
LL+LAV++ + + + F +MIK + G + L Y YGC+CG+GG G+P D
Sbjct: 3 LLVLAVLLTVAAADSGISPRAVWQFRKMIKCVIPGSDPFLEYNNYGCYCGLGGSGTPVDE 62
Query: 60 TDRCCVTHDCCYKRLEKRGCGTKFL-------SYKFSNSGSRITC-AKQDSCRSQLCECD 111
D+CC THD CY + +K KFL +Y +S SGS ITC +K C + +C CD
Sbjct: 63 LDKCCQTHDNCYDQAKKLD-SCKFLLDNPYTHTYSYSCSGSAITCSSKNKECEAFICNCD 121
Query: 112 KAAATCFARNKTTYNKKYQYY-SNKHCR 138
+ AA CF +K YNK ++ + K+C+
Sbjct: 122 RNAAICF--SKAPYNKAHKNLDTKKYCQ 147
>gi|157743243 phospholipase A2, group IIC [Homo sapiens]
Length = 150
Score = 79.7 bits (195), Expect = 8e-16
Identities = 44/132 (33%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 19 HGNLVNFHRMIKLTTGKEAALSYGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRG 78
H + F R +K TG+ A SY YGC+CG+G +G P D TD + Y++L++
Sbjct: 20 HSSFWQFQRRVKHITGRSAFFSYYGYGCYCGLGDKGIPVDDTD--SPSSPSPYEKLKEFS 77
Query: 79 CGTKFLSYKFSNSGSRITC------AKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYY 132
C SY+F + C CR + CECDK + CF + TY K ++ +
Sbjct: 78 CQPVLNSYQFHIVNGAVVCGCTLGPGASCHCRLKACECDKQSVHCFKESLPTYEKNFKQF 137
Query: 133 SNKHCRGSTPRC 144
S S PRC
Sbjct: 138 S------SQPRC 143
>gi|223029412 otoconin 90 [Homo sapiens]
Length = 477
Score = 74.3 bits (181), Expect = 3e-14
Identities = 35/102 (34%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 44 YGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYK-FSNSGSRITCAKQDS 102
YGC+CG GRG P+D DRCC++H CC +++ + GC + L + C Q
Sbjct: 326 YGCYCGQEGRGEPRDDLDRCCLSHHCCLEQVRRLGCLLERLPWSPVVCVDHTPKCGGQSL 385
Query: 103 CRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC 144
C LC CD+ AA C ++N+ + S C G C
Sbjct: 386 CEKLLCACDQTAAECM--TSASFNQSLKSPSRLGCPGQPAAC 425
Score = 65.9 bits (159), Expect = 1e-11
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 9/126 (7%)
Query: 24 NFHRMIKLTTGKEAALS-----YGFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRG 78
NF +I+ G + + YGC C G P D +D CC H CY+ +
Sbjct: 72 NFPVLIQFVNGMKCVAGLCPRDFEDYGCTCRFEMEGLPVDESDSCCFQHRRCYEEAAEMD 131
Query: 79 C--GTKFLSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKH 136
C LS + + +I C +D+C LC CDKAA C AR ++ N
Sbjct: 132 CLQDPAKLSTEVNCVSKKIICESKDNCEHLLCTCDKAAIECLAR--SSLNSSLNLLDTSF 189
Query: 137 CRGSTP 142
C TP
Sbjct: 190 CLAQTP 195
>gi|239751105 PREDICTED: hypothetical protein XP_002347705 [Homo
sapiens]
Length = 138
Score = 39.7 bits (91), Expect = 9e-04
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99
T CC HDCCY R E+ GC K Y + + C +
Sbjct: 34 TRECCHGHDCCYTRAEEAGCSPKTERYSWQCVNQSVLCVR 73
>gi|239745592 PREDICTED: hypothetical protein XP_002344154 [Homo
sapiens]
Length = 138
Score = 37.0 bits (84), Expect = 0.006
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 60 TDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK 99
T CC HDCCY E+ GC K Y + + C +
Sbjct: 34 TRECCHGHDCCYTGAEEAGCSPKTERYSWQCVNQSVLCVR 73
>gi|34734064 fibulin 1 isoform B precursor [Homo sapiens]
Length = 601
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 35 KEAALSYGFYGCHCGVGGRGSPKDAT-----DRCCVT---HDCCYKRLEKRG---CGTKF 83
+E A YG Y C+C G + S D D C + H C Y+ + G C
Sbjct: 452 QECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPS 511
Query: 84 LSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF 118
Y+ + +G C D C + + C TCF
Sbjct: 512 SGYRLAPNGR--NCQDIDECVTGIHNC-SINETCF 543
>gi|34734068 fibulin 1 isoform A precursor [Homo sapiens]
Length = 566
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 35 KEAALSYGFYGCHCGVGGRGSPKDAT-----DRCCVT---HDCCYKRLEKRG---CGTKF 83
+E A YG Y C+C G + S D D C + H C Y+ + G C
Sbjct: 452 QECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPS 511
Query: 84 LSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF 118
Y+ + +G C D C + + C TCF
Sbjct: 512 SGYRLAPNGR--NCQDIDECVTGIHNC-SINETCF 543
>gi|34734066 fibulin 1 isoform D [Homo sapiens]
Length = 703
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 35 KEAALSYGFYGCHCGVGGRGSPKDAT-----DRCCVT---HDCCYKRLEKRG---CGTKF 83
+E A YG Y C+C G + S D D C + H C Y+ + G C
Sbjct: 452 QECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPS 511
Query: 84 LSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF 118
Y+ + +G C D C + + C TCF
Sbjct: 512 SGYRLAPNGR--NCQDIDECVTGIHNC-SINETCF 543
>gi|34734062 fibulin 1 isoform C precursor [Homo sapiens]
Length = 683
Score = 30.4 bits (67), Expect = 0.54
Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 14/95 (14%)
Query: 35 KEAALSYGFYGCHCGVGGRGSPKDAT-----DRCCVT---HDCCYKRLEKRG---CGTKF 83
+E A YG Y C+C G + S D D C + H C Y+ + G C
Sbjct: 452 QECANVYGSYQCYCRRGYQLSDVDGVTCEDIDECALPTGGHICSYRCINIPGSFQCSCPS 511
Query: 84 LSYKFSNSGSRITCAKQDSCRSQLCECDKAAATCF 118
Y+ + +G C D C + + C TCF
Sbjct: 512 SGYRLAPNGR--NCQDIDECVTGIHNC-SINETCF 543
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 30.4 bits (67), Expect = 0.54
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 39 LSYGFYGCHCGVGGRGSPKDATDRCCVTH-DCCYKRLEKRGCGTKFLSYKFSNSGSR 94
L +G+ G CG GG G + C DC Y GCG ++S+ F G R
Sbjct: 47 LGFGYGGLDCGYGGLGCGYGSFCGCGYRGLDCGY------GCGYGYVSHSFCGCGYR 97
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 30.0 bits (66), Expect = 0.70
Identities = 31/115 (26%), Positives = 38/115 (33%), Gaps = 12/115 (10%)
Query: 34 GKEAALSYGFYGCHC--GVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNS 91
G ++G Y CHC G GR D D C + C G T F
Sbjct: 881 GASCQNTHGGYRCHCQAGYSGRNCETDIDD--CRPNPCHNGGSCTDGINTAFCD---CLP 935
Query: 92 GSRITCAKQD--SCRSQLCECDKAAATCFARNKTTYNKKYQYYSNKHCRGSTPRC 144
G R T ++D C S C C T +S HC +TP C
Sbjct: 936 GFRGTFCEEDINECASDPCRNGANCTDCVDSYTCTCPAG---FSGIHCENNTPDC 987
>gi|54400749 keratin associated protein 5-1 [Homo sapiens]
Length = 278
Score = 30.0 bits (66), Expect = 0.70
Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 4/80 (5%)
Query: 42 GFYGCHCGVGGRGSPKDATDRCCVTHDCCYK----RLEKRGCGTKFLSYKFSNSGSRITC 97
G GC G GG GS + C CC K R+ C + S+ GS+ C
Sbjct: 20 GCGGCGSGCGGCGSGCGGSGSSCCVPVCCCKPVCCRVPTCSCSSCGKGGCGSSGGSKGGC 79
Query: 98 AKQDSCRSQLCECDKAAATC 117
C+ C + C
Sbjct: 80 GSCGGCKGGCGSCGGSKGGC 99
Score = 30.0 bits (66), Expect = 0.70
Identities = 22/77 (28%), Positives = 26/77 (33%), Gaps = 13/77 (16%)
Query: 45 GCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAK----Q 100
GC G GG GS CC C K GCG +S S+ +C K
Sbjct: 196 GCGSGCGGCGSGCGVPVCCCSCSSCGSCAGSKGGCG---------SSCSQCSCCKPCCCS 246
Query: 101 DSCRSQLCECDKAAATC 117
C S C+ C
Sbjct: 247 SGCGSSCCQSSCCKPCC 263
Score = 29.6 bits (65), Expect = 0.91
Identities = 23/80 (28%), Positives = 27/80 (33%), Gaps = 7/80 (8%)
Query: 45 GCHCGVGGRGSPKDATDRCCVTHDCCYKRLE-----KRGCGTKFLSYKFSNS--GSRITC 97
GC G GG GS CC CC K GCG+ S S GS+ C
Sbjct: 118 GCGSGCGGCGSSCCVPVCCCKPMCCCVPACSCSSCGKGGCGSCGCSKGACGSCGGSKGGC 177
Query: 98 AKQDSCRSQLCECDKAAATC 117
C+ C + C
Sbjct: 178 GSCGGCKGGCGSCGGSKGGC 197
>gi|60279697 keratin associated protein 5-7 [Homo sapiens]
Length = 165
Score = 29.3 bits (64), Expect = 1.2
Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
Query: 46 CHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRS 105
C G G CC CC GCG+ N C++ C
Sbjct: 103 CSSGCGSSCCQSSCCKPCCCQSSCCKPCCCSSGCGSSCCQSSCCNP----CCSQSSCCVP 158
Query: 106 QLCEC 110
C+C
Sbjct: 159 VCCQC 163
Score = 27.3 bits (59), Expect = 4.5
Identities = 21/79 (26%), Positives = 27/79 (34%), Gaps = 2/79 (2%)
Query: 42 GFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNS--GSRITCAK 99
G GC G GG GS CC CC CG+ S S GS+ C
Sbjct: 20 GCGGCGSGCGGCGSSCCVPVCCCKPVCCCVPACSCSSCGSCGGSKGGCGSCGGSKGGCGS 79
Query: 100 QDSCRSQLCECDKAAATCF 118
+ C + +C+
Sbjct: 80 CGGSKGGCGSCGCSQCSCY 98
>gi|53292629 keratin associated protein 5-11 [Homo sapiens]
Length = 156
Score = 29.3 bits (64), Expect = 1.2
Identities = 21/76 (27%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 42 GFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQD 101
G GC G GG GS CC CC CG S GS+ C
Sbjct: 20 GSGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCG--------SCGGSKGGCGSCG 71
Query: 102 SCRSQLCECDKAAATC 117
S + C + + C
Sbjct: 72 SSKGGCGSCGCSQSNC 87
>gi|239755326 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 80 GTKFLSYKFSNSGSRITCAKQDSCRSQL---CECDKAAATCFARNKTTYNKKYQYYSNK 135
GT SY +SG+ TC+ Q S S C+ ++TC ++ T + + S++
Sbjct: 196 GTSSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSR 254
>gi|239744133 PREDICTED: hypothetical protein [Homo sapiens]
Length = 375
Score = 28.9 bits (63), Expect = 1.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 80 GTKFLSYKFSNSGSRITCAKQDSCRSQL---CECDKAAATCFARNKTTYNKKYQYYSNK 135
GT SY +SG+ TC+ Q S S C+ ++TC ++ T + + S++
Sbjct: 196 GTSSTSYSCQSSGTSSTCSCQSSGTSSTSCSCQSSGTSSTCSCQSSGTSSTSCSWQSSR 254
>gi|56237021 fibrillin 3 precursor [Homo sapiens]
Length = 2809
Score = 28.5 bits (62), Expect = 2.0
Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Query: 42 GFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKF-SNSGSRITCAKQ 100
G Y C CG G R P T T C+ ++++ C S + + A
Sbjct: 785 GSYTCKCGPGSRLDP-SGTFCLDSTKGTCWLKIQESRCEVNLQGASLRSECCATLGAAWG 843
Query: 101 DSCRSQLCECDKAAATCFAR 120
C + CE D A A FAR
Sbjct: 844 SPC--ERCEIDPACARGFAR 861
>gi|123173777 keratin associated protein 5-8 [Homo sapiens]
Length = 187
Score = 28.5 bits (62), Expect = 2.0
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 42 GFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSY--KFSNSGSRITCAK 99
G GC G GG GS CC CC CG+ S + S GS+ C
Sbjct: 13 GCGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGSCGGSKGGRGSCGGSKGDCGS 72
Query: 100 QDSCRSQLCECDKAAATCF 118
+ C + +C+
Sbjct: 73 CGGSKGGCGSCGCSQCSCY 91
Score = 28.5 bits (62), Expect = 2.0
Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 46 CHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRS 105
C G G CC CC GCG+ +S + C++ C
Sbjct: 125 CSSGCGSSCCQSSCCKPCCSQSSCCKPCCCSSGCGSSCC----QSSCCKPCCSQSSCCVP 180
Query: 106 QLCEC 110
C+C
Sbjct: 181 ICCQC 185
Score = 28.1 bits (61), Expect = 2.7
Identities = 17/72 (23%), Positives = 20/72 (27%), Gaps = 5/72 (6%)
Query: 46 CHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGTKFLSYKFSNSGSRITCAKQDSCRS 105
C G G CC CC GCG+ S C Q SC
Sbjct: 96 CSSGCGSSCCQSSCCKPCCSQSSCCKPCSCSSGCGS-----SCCQSSCCKPCCSQSSCCK 150
Query: 106 QLCECDKAAATC 117
C ++C
Sbjct: 151 PCCCSSGCGSSC 162
>gi|14916475 wingless-type MMTV integration site family, member 3A
[Homo sapiens]
Length = 352
Score = 28.1 bits (61), Expect = 2.7
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 40 SYGFYGCH---CGVGGRGSPKDATDRC-CVTHDCCY 71
S+G GC CG G + ++C CV H CCY
Sbjct: 301 SHGIDGCDLLCCGRGHNARAERRREKCRCVFHWCCY 336
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 28.1 bits (61), Expect = 2.7
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 40 SYGFYGCHCGVG--GRGSPKDATDRCCVTHDCCYKRLEKRGC--GTKFLSYKFSNSGSRI 95
S G C C G G G+ A + C +++ C + + + G + + K +G I
Sbjct: 1450 SDGTASCKCAAGFQGNGTICTAINACEISNGGCSAKADCKRTTPGRRVCTCKAGYTGDGI 1509
Query: 96 TCAKQDSCRSQLCECDKAA 114
C + + C CDK A
Sbjct: 1510 VCLEINPCLENHGGCDKNA 1528
>gi|60593038 keratin associated protein 5-4 [Homo sapiens]
Length = 288
Score = 28.1 bits (61), Expect = 2.7
Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 6/79 (7%)
Query: 45 GCHCGVGGRGSPKDATDRC-CVTHDCCYKRLEKRGCGTKFLSYKF-----SNSGSRITCA 98
G G G G K C C CC GCG+ S+SG +C
Sbjct: 176 GSKGGCGSCGGSKGGCGSCGCSQCSCCKPCCCSSGCGSSCCQSSCCKPCCSSSGCGSSCC 235
Query: 99 KQDSCRSQLCECDKAAATC 117
+ C+ C+ C
Sbjct: 236 QSSCCKPYCCQSSCCKPCC 254
Score = 26.9 bits (58), Expect = 5.9
Identities = 14/40 (35%), Positives = 15/40 (37%)
Query: 42 GFYGCHCGVGGRGSPKDATDRCCVTHDCCYKRLEKRGCGT 81
G GC G GG GS CC CC CG+
Sbjct: 34 GCGGCGSGCGGCGSSCCVPICCCKPVCCCVPACSCSSCGS 73
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.137 0.452
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,675,807
Number of Sequences: 37866
Number of extensions: 249944
Number of successful extensions: 866
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 792
Number of HSP's gapped (non-prelim): 95
length of query: 144
length of database: 18,247,518
effective HSP length: 92
effective length of query: 52
effective length of database: 14,763,846
effective search space: 767719992
effective search space used: 767719992
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.