Guide to the Human Genome
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Name: PLA2G2D Sequence: fasta or formatted (145aa) NCBI GI: 6912596
Description:

phospholipase A2, group IID

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.4          5           1
 C cysteine           10.3         15           2
 D aspartate           5.5          8           1
 E glutamate           2.1          3           1
 F phenylalanine       2.1          3           1
 G glycine            10.3         15           2
 H histidine           3.4          5           1
 I isoleucine          4.1          6           1
 K lysine              6.9         10           1
 L leucine             9.0         13           2
 M methionine          2.8          4           1
 N asparagine          3.4          5           1
 P proline             4.1          6           1
 Q glutamine           6.9         10           2
 R arginine            4.8          7           1
 S serine              3.4          5           1
 T threonine           4.1          6           1
 V valine              4.1          6           2
 W tryptophan          2.8          4           1
 Y tyrosine            6.2          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase A2, group IID 
PLA2G2A               0.420   phospholipase A2, group IIA precursor 
PLA2G2A               0.420   phospholipase A2, group IIA precursor 
PLA2G2A               0.420   phospholipase A2, group IIA precursor 
PLA2G2A               0.420   phospholipase A2, group IIA precursor 
PLA2G2F               0.365   phospholipase A2, group IIF 
PLA2G5                0.362   phospholipase A2, group V precursor 
PLA2G2E               0.313   phospholipase A2, group IIE 
PLA2G10               0.261   phospholipase A2, group X 
PLA2G1B               0.218   phospholipase A2 group IB 
PLA2G2C               0.179   phospholipase A2, group IIC 
OC90                  0.147   otoconin 90 
STAB1                 0.036   stabilin 1 precursor 
LOC100290505          0.029   PREDICTED: hypothetical protein XP_002347705 
LOC100289399          0.026   PREDICTED: hypothetical protein XP_002344154 
ST14                  0.013   matriptase 
SLIT3                 0.013   slit homolog 3 
SSPO                  0.013   SCO-spondin 
LTBP3                 0.010   latent transforming growth factor beta binding prot...
LTBP3                 0.010   latent transforming growth factor beta binding prote...
SLIT2                 0.010   slit homolog 2 
CD248                 0.010   tumor endothelial marker 1 precursor 
NOTCH1                0.010   notch1 preproprotein 
LRP8                  0.007   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.007   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.007   low density lipoprotein receptor-related protein 8 i...
LRP8                  0.007   low density lipoprotein receptor-related protein 8 i...
C1S                   0.007   complement component 1, s subcomponent precursor [Hom...
C1S                   0.007   complement component 1, s subcomponent precursor [Ho...
GAD2                  0.007   glutamate decarboxylase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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