Guide to the Human Genome
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Name: PLA2G1B Sequence: fasta or formatted (148aa) NCBI GI: 4505847
Description:

phospholipase A2 group IB

Referenced in:

Lipid Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.1         12           3
 C cysteine            9.5         14           2
 D aspartate           6.8         10           1
 E glutamate           2.7          4           1
 F phenylalanine       3.4          5           1
 G glycine             5.4          8           2
 H histidine           2.0          3           1
 I isoleucine          4.1          6           1
 K lysine              9.5         14           2
 L leucine             8.1         12           2
 M methionine          1.4          2           1
 N asparagine          6.1          9           2
 P proline             4.1          6           1
 Q glutamine           2.7          4           1
 R arginine            2.0          3           1
 S serine              8.8         13           2
 T threonine           4.7          7           1
 V valine              4.1          6           1
 W tryptophan          0.7          1           1
 Y tyrosine            6.1          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   phospholipase A2 group IB 
PLA2G2A               0.239   phospholipase A2, group IIA precursor 
PLA2G2A               0.239   phospholipase A2, group IIA precursor 
PLA2G2A               0.239   phospholipase A2, group IIA precursor 
PLA2G2A               0.239   phospholipase A2, group IIA precursor 
PLA2G2D               0.226   phospholipase A2, group IID 
PLA2G10               0.212   phospholipase A2, group X 
PLA2G2E               0.212   phospholipase A2, group IIE 
PLA2G2F               0.199   phospholipase A2, group IIF 
OC90                  0.172   otoconin 90 
PLA2G5                0.158   phospholipase A2, group V precursor 
PLA2G2C               0.145   phospholipase A2, group IIC 
C12orf64              0.027   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.027   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.027   PREDICTED: hypothetical protein LOC283310 
LOC100290505          0.024   PREDICTED: hypothetical protein XP_002347705 
LOC100289399          0.020   PREDICTED: hypothetical protein XP_002344154 
CRB1                  0.020   crumbs homolog 1 precursor 
JAG2                  0.017   jagged 2 isoform b precursor 
JAG2                  0.017   jagged 2 isoform a precursor 
EYS                   0.017   eyes shut homolog isoform 2 
EYS                   0.017   eyes shut homolog isoform 1 
EYS                   0.017   eyes shut homolog isoform 3 
SLIT3                 0.017   slit homolog 3 
PLA2G12A              0.017   phospholipase A2, group XIIA 
LAMC1                 0.013   laminin, gamma 1 precursor 
F9                    0.010   coagulation factor IX preproprotein 
THBS2                 0.010   thrombospondin 2 precursor 
SLC25A10              0.010   solute carrier family 25 (mitochondrial carrier; dic...
JAG1                  0.010   jagged 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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