Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FBLN1 Sequence: fasta or formatted (683aa) NCBI GI: 34734062
Description:

fibulin 1 isoform C precursor

Referenced in:

Extracellular Matrix

Other entries for this name:
alt prot [601aa] fibulin 1 isoform B precursor
alt prot [703aa] fibulin 1 isoform D
alt prot [566aa] fibulin 1 isoform A precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         36           2
 C cysteine           10.5         72           2
 D aspartate           5.4         37           1
 E glutamate           7.3         50           3
 F phenylalanine       3.1         21           2
 G glycine             8.9         61           3
 H histidine           2.6         18           1
 I isoleucine          4.1         28           2
 K lysine              2.6         18           1
 L leucine             7.5         51           4
 M methionine          1.2          8           1
 N asparagine          4.2         29           1
 P proline             4.8         33           2
 Q glutamine           4.4         30           2
 R arginine            6.1         42           2
 S serine              8.3         57           3
 T threonine           4.7         32           2
 V valine              5.7         39           2
 W tryptophan          0.0          0           0
 Y tyrosine            3.1         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   fibulin 1 isoform C precursor 
FBLN1                 0.841   fibulin 1 isoform D 
FBLN1                 0.838   fibulin 1 isoform B precursor 
FBLN1                 0.837   fibulin 1 isoform A precursor 
FBLN2                 0.429   fibulin 2 isoform b precursor 
FBLN2                 0.414   fibulin 2 isoform a precursor 
HMCN1                 0.174   hemicentin 1 
FBLN5                 0.171   fibulin 5 precursor 
LTBP1                 0.160   latent transforming growth factor beta binding prote...
LTBP1                 0.160   latent transforming growth factor beta binding prote...
FBN1                  0.156   fibrillin 1 precursor 
EFEMP1                0.150   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.150   EGF-containing fibulin-like extracellular matrix pro...
EFEMP1                0.150   EGF-containing fibulin-like extracellular matrix prot...
LTBP4                 0.148   latent transforming growth factor beta binding prot...
LTBP4                 0.148   latent transforming growth factor beta binding prot...
LTBP4                 0.148   latent transforming growth factor beta binding prot...
FBN2                  0.145   fibrillin 2 precursor 
FBN3                  0.145   fibrillin 3 precursor 
LTBP2                 0.141   latent transforming growth factor beta binding protei...
MEGF6                 0.132   EGF-like-domain, multiple 3 
EFEMP2                0.132   EGF-containing fibulin-like extracellular matrix pr...
HMCN2                 0.130   PREDICTED: hemicentin 2 
HMCN2                 0.130   PREDICTED: hemicentin 2 
HMCN2                 0.130   PREDICTED: hemicentin 2 
MATN2                 0.126   matrilin 2 isoform b precursor 
MATN2                 0.126   matrilin 2 isoform a precursor 
LTBP3                 0.123   latent transforming growth factor beta binding prot...
LTBP3                 0.123   latent transforming growth factor beta binding prote...
SCUBE3                0.119   signal peptide, CUB domain, EGF-like 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press