Guide to the Human Genome
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Name: LOC100292088 Sequence: fasta or formatted (271aa) NCBI GI: 239758167
Description:

PREDICTED: hypothetical protein XP_002346321

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.4         39           3
 C cysteine            3.7         10           1
 D aspartate           2.2          6           1
 E glutamate           4.1         11           2
 F phenylalanine       0.7          2           1
 G glycine            12.9         35           2
 H histidine           0.0          0           0
 I isoleucine          0.7          2           1
 K lysine              2.6          7           1
 L leucine             8.1         22           2
 M methionine          0.4          1           1
 N asparagine          1.5          4           1
 P proline            16.6         45           2
 Q glutamine           3.0          8           1
 R arginine           11.4         31           2
 S serine             11.1         30           1
 T threonine           1.8          5           1
 V valine              3.7         10           1
 W tryptophan          0.7          2           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346321 
TAF4                  0.064   TBP-associated factor 4 
OGFR                  0.054   opioid growth factor receptor 
NACA                  0.054   nascent polypeptide-associated complex alpha subuni...
FLJ22184              0.052   PREDICTED: hypothetical protein LOC80164 
SCARF2                0.049   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.049   scavenger receptor class F, member 2 isoform 2 [Homo...
LOC645321             0.047   PREDICTED: hypothetical protein 
LOC645321             0.047   PREDICTED: hypothetical protein 
SYNJ1                 0.045   synaptojanin 1 isoform c 
WBP11                 0.045   WW domain binding protein 11 
FLJ22184              0.045   PREDICTED: hypothetical protein FLJ22184 
LOC643355             0.043   PREDICTED: hypothetical protein 
KLRG2                 0.043   killer cell lectin-like receptor subfamily G, member...
SYNJ1                 0.041   synaptojanin 1 isoform a 
SYNJ1                 0.041   synaptojanin 1 isoform b 
FLJ22184              0.041   PREDICTED: hypothetical protein FLJ22184 
C6orf132              0.041   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.041   PREDICTED: chromosome 6 open reading frame 132 [Hom...
C6orf132              0.041   PREDICTED: hypothetical protein LOC647024 
WIPF1                 0.041   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.041   WAS/WASL interacting protein family, member 1 
LOC283999             0.041   hypothetical protein LOC283999 
ATN1                  0.041   atrophin-1 
ATN1                  0.041   atrophin-1 
PRB2                  0.041   proline-rich protein BstNI subfamily 2 
SALL3                 0.039   sal-like 3 
TSC22D2               0.039   TSC22 domain family, member 2 
C17orf96              0.039   hypothetical protein LOC100170841 
ZNF469                0.037   zinc finger protein 469 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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