Search of human proteins with 239758090

Search of human proteins with 239758090

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239758090 PREDICTED: major histocompatibility complex, class
II, DR beta 4 [Homo sapiens]
         (278 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239758090 PREDICTED: major histocompatibility complex, class ...   574   e-164
gi|52630344 major histocompatibility complex, class II, DR beta ...   482   e-136
gi|155030211 major histocompatibility complex, class II, DR beta...   420   e-118
gi|239740853 PREDICTED: similar to major histocompatibility comp...   420   e-118
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ...   417   e-117
gi|239748785 PREDICTED: similar to HLA class II histocompatibili...   416   e-116
gi|239740857 PREDICTED: similar to major histocompatibility comp...   414   e-116
gi|239740855 PREDICTED: similar to major histocompatibility comp...   413   e-116
gi|18641375 major histocompatibility complex, class II, DR beta ...   411   e-115
gi|239740743 PREDICTED: similar to HLA class II histocompatibili...   410   e-115
gi|239740693 PREDICTED: similar to HLA class II histocompatibili...   410   e-115
gi|239740745 PREDICTED: similar to HLA class II histocompatibili...   410   e-115
gi|239740695 PREDICTED: similar to HLA class II histocompatibili...   410   e-115
gi|17986005 major histocompatibility complex, class II, DR beta ...   408   e-114
gi|239740859 PREDICTED: similar to major histocompatibility comp...   407   e-114
gi|169217452 PREDICTED: similar to HLA class II histocompatibili...   349   1e-96
gi|239758092 PREDICTED: similar to HLA class II histocompatibili...   347   9e-96
gi|150418002 major histocompatibility complex, class II, DQ beta...   315   3e-86
gi|169168591 PREDICTED: similar to major histocompatibility comp...   315   3e-86
gi|239740920 PREDICTED: similar to major histocompatibility comp...   311   4e-85
gi|239740918 PREDICTED: similar to major histocompatibility comp...   311   4e-85
gi|239758095 PREDICTED: similar to major histocompatibility comp...   309   2e-84
gi|239740749 PREDICTED: similar to major histocompatibility comp...   309   2e-84
gi|239748788 PREDICTED: similar to major histocompatibility comp...   306   1e-83
gi|239740863 PREDICTED: similar to major histocompatibility comp...   306   1e-83
gi|239513955 PREDICTED: similar to major histocompatibility comp...   306   1e-83
gi|24797076 major histocompatibility complex, class II, DP beta ...   300   1e-81
gi|4504403 major histocompatibility complex, class II, DO beta p...   282   2e-76
gi|169168671 PREDICTED: similar to MHC class II antigen [Homo sa...   261   5e-70
gi|169168589 PREDICTED: similar to MHC class II antigen [Homo sa...   191   5e-49

>gi|239758090 PREDICTED: major histocompatibility complex, class II,
           DR beta 4 [Homo sapiens]
          Length = 278

 Score =  574 bits (1480), Expect = e-164
 Identities = 278/278 (100%), Positives = 278/278 (100%)

Query: 1   MNTVGAVEGTGSQRPHPAQGVRVGGVAVSVFSGGRPCDRIVRVPTARFLEQAKCECHFLN 60
           MNTVGAVEGTGSQRPHPAQGVRVGGVAVSVFSGGRPCDRIVRVPTARFLEQAKCECHFLN
Sbjct: 1   MNTVGAVEGTGSQRPHPAQGVRVGGVAVSVFSGGRPCDRIVRVPTARFLEQAKCECHFLN 60

Query: 61  GTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYC 120
           GTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYC
Sbjct: 61  GTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYC 120

Query: 121 RYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK 180
           RYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK
Sbjct: 121 RYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK 180

Query: 181 AGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKM 240
           AGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKM
Sbjct: 181 AGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKM 240

Query: 241 LSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           LSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS
Sbjct: 241 LSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278


>gi|52630344 major histocompatibility complex, class II, DR beta 4
           precursor [Homo sapiens]
          Length = 266

 Score =  482 bits (1241), Expect = e-136
 Identities = 232/232 (100%), Positives = 232/232 (100%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK
Sbjct: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG
Sbjct: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS
Sbjct: 215 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 266


>gi|155030211 major histocompatibility complex, class II, DR beta 1
           precursor [Homo sapiens]
          Length = 266

 Score =  420 bits (1080), Expect = e-118
 Identities = 203/232 (87%), Positives = 215/232 (92%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFL Q K ECHF NGTERV  L RY YNQEE  R++SD+GE++AVTELGRPDAEYWNSQK
Sbjct: 35  RFLWQPKRECHFFNGTERVRFLDRYFYNQEESVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           D+LE+ RA VDTYCR+NYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DILEQARAAVDTYCRHNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWF NGQEEKAG+VSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 155 SIEVRWFLNGQEEKAGMVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740853 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  420 bits (1079), Expect = e-118
 Identities = 201/232 (86%), Positives = 216/232 (93%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFLE  K ECHF NGTERV  L R+ +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQK
Sbjct: 35  RFLELLKSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           DLLE++R +VD YCR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQKRGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+WSARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VEWSARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
           sapiens]
          Length = 266

 Score =  417 bits (1073), Expect = e-117
 Identities = 201/232 (86%), Positives = 213/232 (91%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFLE+ K ECHF NGTERV  L RY +NQEE  R++SD+GE++AVTELGRPDAEYWNSQK
Sbjct: 35  RFLEEVKFECHFFNGTERVRLLERYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           DLLE+RRA VDTYCR+NYGV ESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQRRAAVDTYCRHNYGVGESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-9 beta chain [Homo sapiens]
          Length = 266

 Score =  416 bits (1068), Expect = e-116
 Identities = 203/232 (87%), Positives = 214/232 (92%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFL+Q K ECHF NGTERV  L R IYNQEE  R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 35  RFLKQDKFECHFFNGTERVRYLHRGIYNQEENVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           D LERRRAEVDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DFLERRRAEVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740857 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 2 [Homo sapiens]
          Length = 266

 Score =  414 bits (1063), Expect = e-116
 Identities = 198/232 (85%), Positives = 211/232 (90%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFLE +  ECHF NGTERV  L RY +NQEE  R++SD+GE++AVTELGRPDAEYWNSQK
Sbjct: 35  RFLEYSTSECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           DLLE++R  VD YCR+NYGVVESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQKRGRVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 155 SIEVRWFRNGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 266


>gi|239740855 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  413 bits (1062), Expect = e-116
 Identities = 197/226 (87%), Positives = 212/226 (93%)

Query: 53  KCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERR 112
           K ECHF NGTERV  L R+ +NQEEYAR++SD+GEY+AV ELGRPDAEYWNSQKDLLE++
Sbjct: 42  KSECHFFNGTERVRFLERHFHNQEEYARFDSDVGEYRAVRELGRPDAEYWNSQKDLLEQK 101

Query: 113 RAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRW 172
           R +VD YCR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPGSIEVRW
Sbjct: 102 RGQVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPGSIEVRW 161

Query: 173 FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSAR 232
           FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+WSAR
Sbjct: 162 FRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSAR 221

Query: 233 SESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           SESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 222 SESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 267


>gi|18641375 major histocompatibility complex, class II, DR beta 5
           precursor [Homo sapiens]
          Length = 266

 Score =  411 bits (1056), Expect = e-115
 Identities = 199/232 (85%), Positives = 213/232 (91%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFL+Q K ECHF NGTERV  L R IYNQEE  R++SD+GEY+AVTELGRPDAEYWNSQK
Sbjct: 35  RFLQQDKYECHFFNGTERVRFLHRDIYNQEEDLRFDSDVGEYRAVTELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           D LE RRA VDTYCR+NYGV ESFTVQRRV+PKVTVYP++TQ LQHHNLLVCSVNGFYPG
Sbjct: 95  DFLEDRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPARTQTLQHHNLLVCSVNGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRN QEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLT
Sbjct: 155 SIEVRWFRNSQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W A+SESAQSKMLSGVGGFVLGLLFLG GLFIYF+NQKGHSGL PTGL+S
Sbjct: 215 VEWRAQSESAQSKMLSGVGGFVLGLLFLGAGLFIYFKNQKGHSGLHPTGLVS 266


>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  410 bits (1054), Expect = e-115
 Identities = 198/233 (84%), Positives = 213/233 (91%)

Query: 46  ARFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQ 105
           +RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQ
Sbjct: 32  SRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQ 91

Query: 106 KDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYP 165
           KD+LE RR +VDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYP
Sbjct: 92  KDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYP 151

Query: 166 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPL 225
           GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPL
Sbjct: 152 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPL 211

Query: 226 TVQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           TV+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 212 TVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
          Length = 264

 Score =  410 bits (1054), Expect = e-115
 Identities = 198/233 (84%), Positives = 213/233 (91%)

Query: 46  ARFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQ 105
           +RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQ
Sbjct: 32  SRFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQ 91

Query: 106 KDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYP 165
           KD+LE RR +VDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYP
Sbjct: 92  KDILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYP 151

Query: 166 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPL 225
           GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPL
Sbjct: 152 GSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPL 211

Query: 226 TVQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           TV+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 212 TVEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 264


>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  410 bits (1053), Expect = e-115
 Identities = 198/232 (85%), Positives = 212/232 (91%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           D+LE RR +VDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
          Length = 266

 Score =  410 bits (1053), Expect = e-115
 Identities = 198/232 (85%), Positives = 212/232 (91%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           D+LE RR +VDT CR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DILEDRRGQVDTVCRHNYGVGESFTVQRRVHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPLT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|17986005 major histocompatibility complex, class II, DR beta 3
           precursor [Homo sapiens]
          Length = 266

 Score =  408 bits (1049), Expect = e-114
 Identities = 197/232 (84%), Positives = 211/232 (90%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFLE  K ECHF NGTERV  L RY +NQEE+ R++SD+GEY+AVTELGRP AE WNSQK
Sbjct: 35  RFLELRKSECHFFNGTERVRYLDRYFHNQEEFLRFDSDVGEYRAVTELGRPVAESWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           DLLE++R  VD YCR+NYGV ESFTVQRRV P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLLEQKRGRVDNYCRHNYGVGESFTVQRRVHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 154

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ S LT
Sbjct: 155 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSALT 214

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 215 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 266


>gi|239740859 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 3 isoform 1 [Homo sapiens]
          Length = 267

 Score =  407 bits (1045), Expect = e-114
 Identities = 194/224 (86%), Positives = 206/224 (91%)

Query: 55  ECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRA 114
           ECHF NGTERV  L RY +NQEE  R++SD+GE++AVTELGRPDAEYWNSQKDLLE++R 
Sbjct: 44  ECHFFNGTERVRYLDRYFHNQEENVRFDSDVGEFRAVTELGRPDAEYWNSQKDLLEQKRG 103

Query: 115 EVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFR 174
            VD YCR+NYGVVESFTVQRRV PKVTVYPSKTQPLQHHNLLVCSV+GFYPGSIEVRWFR
Sbjct: 104 RVDNYCRHNYGVVESFTVQRRVHPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFR 163

Query: 175 NGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSE 234
           NGQEEK GVVSTGLI NGDWTFQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+W ARSE
Sbjct: 164 NGQEEKTGVVSTGLIHNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRARSE 223

Query: 235 SAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           SAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQP G LS
Sbjct: 224 SAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPRGFLS 267


>gi|169217452 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-4 beta chain, partial [Homo sapiens]
          Length = 223

 Score =  349 bits (896), Expect = 1e-96
 Identities = 170/204 (83%), Positives = 183/204 (89%), Gaps = 2/204 (0%)

Query: 20  GVRVGGVAVSVFSGGRPCDRIVRVPTARFLEQAKCECHFLNGTERVWNLIRYIYNQEEYA 79
           G+RVG    SVF GGR C+RIV VP ARFLEQ K ECHF NGTERV  L RY Y+QEEY 
Sbjct: 22  GLRVG--PDSVFPGGRFCNRIVLVPPARFLEQVKHECHFFNGTERVRFLDRYFYHQEEYV 79

Query: 80  RYNSDLGEYQAVTELGRPDAEYWNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPK 139
           R++SD+GEY+AVTELGRPDAEYWNSQKDLLE++RA VDTYCR+NYGV ESFTVQRRV P+
Sbjct: 80  RFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQKRAAVDTYCRHNYGVGESFTVQRRVYPE 139

Query: 140 VTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTL 199
           VTVYP+KTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEK GVVSTGLIQNGDWTFQTL
Sbjct: 140 VTVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTL 199

Query: 200 VMLETVPRSGEVYTCQVEHPSMMS 223
           VMLETVPRSGEVYTCQVEHPS+ S
Sbjct: 200 VMLETVPRSGEVYTCQVEHPSLTS 223


>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
           antigen, DRB1-7 beta chain [Homo sapiens]
          Length = 253

 Score =  347 bits (889), Expect = 9e-96
 Identities = 177/232 (76%), Positives = 191/232 (82%), Gaps = 13/232 (5%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFL Q K +CHF NGTERV  L R  YNQEE+ R++SD+GEY+AVTELGRP AE    Q 
Sbjct: 35  RFLWQGKYKCHFFNGTERVQFLERLFYNQEEFVRFDSDVGEYRAVTELGRPVAEQKTKQG 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPG 166
           DLL          C  +   +  F +   V P+VTVYP+KTQPLQHHNLLVCSV+GFYPG
Sbjct: 95  DLL----------CLPDSFPLPCFLL---VHPEVTVYPAKTQPLQHHNLLVCSVSGFYPG 141

Query: 167 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLT 226
           SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPS+MSPLT
Sbjct: 142 SIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVMSPLT 201

Query: 227 VQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTGLLS 278
           V+W ARSESAQSKMLSGVGGFVLGLLFLG GLFIYFRNQKGHSGLQPTG LS
Sbjct: 202 VEWRARSESAQSKMLSGVGGFVLGLLFLGAGLFIYFRNQKGHSGLQPTGFLS 253


>gi|150418002 major histocompatibility complex, class II, DQ beta 1
           precursor [Homo sapiens]
          Length = 261

 Score =  315 bits (807), Expect = 3e-86
 Identities = 152/220 (69%), Positives = 179/220 (81%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + RYIYN+EEYAR++SD+G Y+AVT  GRPDAEYWNSQK+
Sbjct: 39  FVFQFKGMCYFTNGTERVRLVTRYIYNREEYARFDSDVGVYRAVTPQGRPDAEYWNSQKE 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LE  RAE+DT CR+NY V     +QRRV+P VT+ PS+T+ L HHNLLVCSV  FYPG 
Sbjct: 99  VLEGTRAELDTVCRHNYEVAFRGILQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPGQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSGVGGFVLGL+FLG GL I  R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGVGGFVLGLIFLGLGLIIRQRSQKG 258


>gi|169168591 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 1 [Homo sapiens]
          Length = 261

 Score =  315 bits (807), Expect = 3e-86
 Identities = 150/220 (68%), Positives = 179/220 (81%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + RYIYN+EEYAR++SD+G Y+AVT LG P AEYWNSQK+
Sbjct: 39  FVFQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER RA VDT CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  VLERTRASVDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740920 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 2 [Homo sapiens]
          Length = 261

 Score =  311 bits (797), Expect = 4e-85
 Identities = 147/220 (66%), Positives = 178/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + RYIYN+EEYAR++SD+G Y+AVT LG P AEYWNSQK+
Sbjct: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER RAE+DT CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740918 PREDICTED: similar to major histocompatibility
           complex, class II, DQ beta 1 isoform 1 [Homo sapiens]
          Length = 281

 Score =  311 bits (797), Expect = 4e-85
 Identities = 147/220 (66%), Positives = 178/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + RYIYN+EEYAR++SD+G Y+AVT LG P AEYWNSQK+
Sbjct: 39  FVYQFKGMCYFTNGTERVRGVTRYIYNREEYARFDSDVGVYRAVTPLGPPAAEYWNSQKE 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER RAE+DT CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  VLERTRAELDTVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE  GVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ +P+ V
Sbjct: 159 IKVRWFRNDQEETTGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQNPIIV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239758095 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  309 bits (792), Expect = 2e-84
 Identities = 148/220 (67%), Positives = 178/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + R IYN+EE  R++SD+GE++AVT LG P AEYWNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER+RA VD  CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRNGQEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740749 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  309 bits (792), Expect = 2e-84
 Identities = 148/220 (67%), Positives = 178/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + R IYN+EE  R++SD+GE++AVT LG P AEYWNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER+RA VD  CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRNGQEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNGQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239748788 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 isoform 2 [Homo sapiens]
          Length = 281

 Score =  306 bits (785), Expect = 1e-83
 Identities = 147/220 (66%), Positives = 177/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + R IYN+EE  R++SD+GE++AVT LG P AEYWNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER+RA VD  CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239740863 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  306 bits (785), Expect = 1e-83
 Identities = 147/220 (66%), Positives = 177/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + R IYN+EE  R++SD+GE++AVT LG P AEYWNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER+RA VD  CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|239513955 PREDICTED: similar to major histocompatibility
           complex, class II, DR beta 5 [Homo sapiens]
          Length = 281

 Score =  306 bits (785), Expect = 1e-83
 Identities = 147/220 (66%), Positives = 177/220 (80%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ Q K  C+F NGTERV  + R IYN+EE  R++SD+GE++AVT LG P AEYWNSQKD
Sbjct: 39  FVYQFKGMCYFTNGTERVRLVSRSIYNREEIVRFDSDVGEFRAVTLLGLPAAEYWNSQKD 98

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           +LER+RA VD  CR+NY +    T+QRRV+P VT+ PS+T+ L HHNLLVCSV  FYP  
Sbjct: 99  ILERKRAAVDRVCRHNYQLELRTTLQRRVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQ 158

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+VRWFRN QEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTC VEHPS+ SP+TV
Sbjct: 159 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSLQSPITV 218

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKG 267
           +W A+SESAQSKMLSG+GGFVLGL+FLG GL I+ R+QKG
Sbjct: 219 EWRAQSESAQSKMLSGIGGFVLGLIFLGLGLIIHHRSQKG 258


>gi|24797076 major histocompatibility complex, class II, DP beta 1
           precursor [Homo sapiens]
          Length = 258

 Score =  300 bits (767), Expect = 1e-81
 Identities = 144/229 (62%), Positives = 178/229 (77%), Gaps = 2/229 (0%)

Query: 42  RVPTARFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEY 101
           R     +L Q + EC+  NGT+R   L RYIYN+EE+AR++SD+GE++AVTELGRP AEY
Sbjct: 30  RATPENYLFQGRQECYAFNGTQRF--LERYIYNREEFARFDSDVGEFRAVTELGRPAAEY 87

Query: 102 WNSQKDLLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVN 161
           WNSQKD+LE +RA  D  CR+NY +    T+QRRVQP+V V PSK  PLQHHNLLVC V 
Sbjct: 88  WNSQKDILEEKRAVPDRMCRHNYELGGPMTLQRRVQPRVNVSPSKKGPLQHHNLLVCHVT 147

Query: 162 GFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSM 221
            FYPGSI+VRWF NGQEE AGVVST LI+NGDWTFQ LVMLE  P+ G+VYTCQVEH S+
Sbjct: 148 DFYPGSIQVRWFLNGQEETAGVVSTNLIRNGDWTFQILVMLEMTPQQGDVYTCQVEHTSL 207

Query: 222 MSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSG 270
            SP+TV+W A+S+SA+SK L+G GGFVLGL+  G G+F++ R++K   G
Sbjct: 208 DSPVTVEWKAQSDSARSKTLTGAGGFVLGLIICGVGIFMHRRSKKVQRG 256


>gi|4504403 major histocompatibility complex, class II, DO beta
           precursor [Homo sapiens]
          Length = 273

 Score =  282 bits (722), Expect = 2e-76
 Identities = 132/228 (57%), Positives = 174/228 (76%)

Query: 48  FLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQKD 107
           F+ QAK +C+F NGTE+V  ++R+I+N EEY R++SD+G + A+T+LG+PDAE WNS+ D
Sbjct: 33  FVIQAKADCYFTNGTEKVQFVVRFIFNLEEYVRFDSDVGMFVALTKLGQPDAEQWNSRLD 92

Query: 108 LLERRRAEVDTYCRYNYGVVESFTVQRRVQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGS 167
           LLER R  VD  CR+NY +   FTV R+VQP+VTVYP +T  L  HNLL CSV GFYPG 
Sbjct: 93  LLERSRQAVDGVCRHNYRLGAPFTVGRKVQPEVTVYPERTPLLHQHNLLHCSVTGFYPGD 152

Query: 168 IEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSMMSPLTV 227
           I+++WF NGQEE+AGV+STG I+NGDWTFQT+VMLE  P  G VYTC V+H S++SP++V
Sbjct: 153 IKIKWFLNGQEERAGVMSTGPIRNGDWTFQTVVMLEMTPELGHVYTCLVDHSSLLSPVSV 212

Query: 228 QWSARSESAQSKMLSGVGGFVLGLLFLGTGLFIYFRNQKGHSGLQPTG 275
           +W A+SE +  KMLSG+  F+LGL+FL  G+ I  R QKG+   Q +G
Sbjct: 213 EWRAQSEYSWRKMLSGIAAFLLGLIFLLVGIVIQLRAQKGYVRTQMSG 260


>gi|169168671 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 241

 Score =  261 bits (667), Expect = 5e-70
 Identities = 124/140 (88%), Positives = 133/140 (95%)

Query: 136 VQPKVTVYPSKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWT 195
           +QPK T+YP+KT+PL H N LVCSV+GFYPGSIEVRWF+NGQEEKA VVS GLIQNGDWT
Sbjct: 99  LQPKGTMYPAKTEPLHHRNPLVCSVSGFYPGSIEVRWFQNGQEEKAAVVSIGLIQNGDWT 158

Query: 196 FQTLVMLETVPRSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKMLSGVGGFVLGLLFLG 255
           FQTLVMLETVPRSGEVYTCQVEHPS+ SPLTV+WSAR+ESAQSKMLSGVGGFVLGLLFLG
Sbjct: 159 FQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWSARTESAQSKMLSGVGGFVLGLLFLG 218

Query: 256 TGLFIYFRNQKGHSGLQPTG 275
           TGLFIYFRNQKGHSGLQPTG
Sbjct: 219 TGLFIYFRNQKGHSGLQPTG 238


>gi|169168589 PREDICTED: similar to MHC class II antigen [Homo
           sapiens]
          Length = 140

 Score =  191 bits (486), Expect = 5e-49
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 47  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 106
           RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK
Sbjct: 35  RFLEQAKCECHFLNGTERVWNLIRYIYNQEEYARYNSDLGEYQAVTELGRPDAEYWNSQK 94

Query: 107 DLLERRRAEVDTYCRYNYGVVESFTVQRR 135
           DLLERRRAEVDTYCRYNYGVVESFTVQRR
Sbjct: 95  DLLERRRAEVDTYCRYNYGVVESFTVQRR 123


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,024,104
Number of Sequences: 37866
Number of extensions: 479582
Number of successful extensions: 1212
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1072
Number of HSP's gapped (non-prelim): 135
length of query: 278
length of database: 18,247,518
effective HSP length: 101
effective length of query: 177
effective length of database: 14,423,052
effective search space: 2552880204
effective search space used: 2552880204
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.