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Search of human proteins with 239757317
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239757317 PREDICTED: hypothetical protein [Homo sapiens]
(198 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757317 PREDICTED: hypothetical protein [Homo sapiens] 417 e-117
gi|48762934 alpha 2 type I collagen [Homo sapiens] 41 8e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 40 0.001
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 40 0.001
gi|12707580 paired-like homeobox 2b [Homo sapiens] 40 0.001
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 39 0.003
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 39 0.003
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 39 0.004
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 38 0.005
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 38 0.005
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 38 0.005
gi|13775236 scratch [Homo sapiens] 38 0.005
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens] 37 0.008
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 37 0.008
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ... 37 0.008
gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo sap... 37 0.008
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ... 37 0.008
gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo sap... 37 0.008
gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens] 37 0.011
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 37 0.011
gi|4505531 oxysterol binding protein [Homo sapiens] 37 0.011
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 37 0.014
gi|21322252 androgen receptor isoform 1 [Homo sapiens] 36 0.019
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 36 0.019
gi|239752966 PREDICTED: hypothetical protein [Homo sapiens] 36 0.024
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 36 0.024
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 36 0.024
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.032
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.032
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.032
>gi|239757317 PREDICTED: hypothetical protein [Homo sapiens]
Length = 198
Score = 417 bits (1072), Expect = e-117
Identities = 198/198 (100%), Positives = 198/198 (100%)
Query: 1 MAVSGFSGRARPGAGGRTWETSMLVGKVAVRMILPCCTATPVTMGLPDTGLARRKFPMGV 60
MAVSGFSGRARPGAGGRTWETSMLVGKVAVRMILPCCTATPVTMGLPDTGLARRKFPMGV
Sbjct: 1 MAVSGFSGRARPGAGGRTWETSMLVGKVAVRMILPCCTATPVTMGLPDTGLARRKFPMGV 60
Query: 61 PGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTT 120
PGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTT
Sbjct: 61 PGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTT 120
Query: 121 WGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSP 180
WGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSP
Sbjct: 121 WGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSP 180
Query: 181 RAGPGAATWAPLVSGASD 198
RAGPGAATWAPLVSGASD
Sbjct: 181 RAGPGAATWAPLVSGASD 198
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 40.8 bits (94), Expect = 8e-04
Identities = 48/134 (35%), Positives = 55/134 (41%), Gaps = 18/134 (13%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELM-RCTLAGPAAAATFTGLPGPAANS-CRGPTAWGRVTT 114
P G G+ +G +T P R GP+ + G PGPA RGP R
Sbjct: 770 PPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGP----RGDQ 825
Query: 115 CEVGTTWGRFNSGEVGLRPVGYPG-GGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR 173
VG T GEVG VG PG GE G + A TAG PG G +G PG
Sbjct: 826 GPVGRT------GEVGA--VGPPGFAGEKGPSGEAGTAGP-PGTPGPQGLLGAPGILGLP 876
Query: 174 GPRTSSPRAGPGAA 187
G R R PG A
Sbjct: 877 GSR--GERGLPGVA 888
Score = 38.9 bits (89), Expect = 0.003
Identities = 48/139 (34%), Positives = 52/139 (37%), Gaps = 26/139 (18%)
Query: 50 GLARRKFPMGVPG-AVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTA 108
GL + +G PG A A GS +V P AGP F G PGP
Sbjct: 217 GLPGERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPG---FPGAPGPKGEI------ 267
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLR----PVGYPGG-GESGTTCGAATAGTG--------P 155
G V G GEVGL PVG PG G +G T AG P
Sbjct: 268 -GAVGNA--GPAGPAGPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLP 324
Query: 156 GGRGKVAAVGGPGTTWARG 174
G RG VG G T ARG
Sbjct: 325 GPRGIPGPVGAAGATGARG 343
Score = 38.9 bits (89), Expect = 0.003
Identities = 44/131 (33%), Positives = 48/131 (36%), Gaps = 14/131 (10%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVG 118
G+PG R P E GP + +G PGP N P G V G
Sbjct: 580 GLPGPAGPRGERG--PPGESGAAGPTGPIGSRGPSGPPGPDGNKGE-PGVVGAV-----G 631
Query: 119 TTWGRFNSGEVGLR-PVGYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR 173
T SG G R G PGG GE G G G RG AVG PG A
Sbjct: 632 TAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRD-GARGAPGAVGAPGPAGAT 690
Query: 174 GPRTSSPRAGP 184
G R + AGP
Sbjct: 691 GDRGEAGAAGP 701
Score = 38.1 bits (87), Expect = 0.005
Identities = 44/138 (31%), Positives = 51/138 (36%), Gaps = 20/138 (14%)
Query: 49 TGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAANSCRGPT 107
TG A + P G PG E P + GP A F G PG P RG
Sbjct: 126 TGPAGARGPAGPPGKAGEDGHPGKPGRPG--ERGVVGPQGARGFPGTPGLPGFKGIRGHN 183
Query: 108 AWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGG 166
G + G G++ G PG GE+GT G PG RG+ VG
Sbjct: 184 ----------GLDGLKGQPGAPGVK--GEPGAPGENGTPGQTGARGL-PGERGR---VGA 227
Query: 167 PGTTWARGPRTSSPRAGP 184
PG ARG S GP
Sbjct: 228 PGPAGARGSDGSVGPVGP 245
Score = 37.4 bits (85), Expect = 0.008
Identities = 45/135 (33%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 59 GVPGAVAE-------GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGR 111
G PGA E G V PT + AGP G PGPA + G
Sbjct: 733 GQPGAKGERGAKGPKGENGVVGPTGPVGAAGPAGP------NGPPGPAGSRGDGGPPGMT 786
Query: 112 VTTCEVGTTWGRFNSGEVGLRPVGYPG-GGESGTTCGAATAGTGPGGR-GKVAAVGGPGT 169
G T SG G P G PG G+ G GP GR G+V AVG PG
Sbjct: 787 GFPGAAGRTGPPGPSGISG--PPGPPGPAGKEGLR--GPRGDQGPVGRTGEVGAVGPPGF 842
Query: 170 TWARGPRTSSPRAGP 184
+GP + AGP
Sbjct: 843 AGEKGPSGEAGTAGP 857
Score = 36.6 bits (83), Expect = 0.014
Identities = 36/114 (31%), Positives = 40/114 (35%), Gaps = 13/114 (11%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGT 144
GP F GLPGP+ GP EVG R GE GL P G
Sbjct: 547 GPPGPPGFQGLPGPS-----GPAG-------EVGKPGERGLHGEFGLPGPAGPRGERGPP 594
Query: 145 TCGAATAGTGP-GGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGAS 197
A TGP G RG G G G + AGP + P GA+
Sbjct: 595 GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAA 648
Score = 35.8 bits (81), Expect = 0.024
Identities = 48/171 (28%), Positives = 57/171 (33%), Gaps = 14/171 (8%)
Query: 35 PCCTATPVTMGLPDTGLARRKFPMGVPGAV-AEGSCRAVTPTPELMRCT---LAGPAAAA 90
P +P + GLP G R MG PG+ A G P + R L GP
Sbjct: 396 PGLRGSPGSRGLP--GADGRAGVMGPPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLP 453
Query: 91 TFTGLPGPAANSCRGPTAWGRVT--TCEVGTTWGRFNSGEVGLR----PVGYPGGGESGT 144
G GPA GP + +G R G +G P G PG
Sbjct: 454 GSPGNIGPAGKE--GPVGLPGIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKG 511
Query: 145 TCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G A A PG G A G PG +G + GP P SG
Sbjct: 512 HAGLAGARGAPGPDGNNGAQGPPGPQGVQGGKGEQGPPGPPGFQGLPGPSG 562
Score = 35.8 bits (81), Expect = 0.024
Identities = 38/114 (33%), Positives = 41/114 (35%), Gaps = 21/114 (18%)
Query: 94 GLPGPAA-NSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR-PVGYPGG----GESGTTCG 147
GLPGPA RGP G + +G +G R P G PG GE G
Sbjct: 580 GLPGPAGPRGERGPP----------GESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGA 629
Query: 148 AATAGTG-----PGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
TAG PG RG GG G G R G A AP GA
Sbjct: 630 VGTAGPSGPSGLPGERGAAGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGA 683
Score = 33.9 bits (76), Expect = 0.093
Identities = 47/151 (31%), Positives = 57/151 (37%), Gaps = 21/151 (13%)
Query: 44 MGLPDTGLARRKFPMGVPGAVAE----GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPA 99
+GLP G+ R P+G GA E G PT + + G A A G PGP
Sbjct: 468 VGLP--GIDGRPGPIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPD 525
Query: 100 ANS-CRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPG-GGESGTTCGAATAGTGPGG 157
N+ +GP G G+ G G P G+ G G SG A G PG
Sbjct: 526 GNNGAQGPPG-------PQGVQGGKGEQGPPG--PPGFQGLPGPSGP---AGEVGK-PGE 572
Query: 158 RGKVAAVGGPGTTWARGPRTSSPRAGPGAAT 188
RG G PG RG R +G T
Sbjct: 573 RGLHGEFGLPGPAGPRGERGPPGESGAAGPT 603
Score = 33.5 bits (75), Expect = 0.12
Identities = 61/200 (30%), Positives = 68/200 (34%), Gaps = 41/200 (20%)
Query: 12 PGAGGRTWETSMLVGKVAVRMILPCCTATPVTMGLPD-------TGLARRKFPMGVPGAV 64
PG GR E + VG R P T GLP GL K G PG
Sbjct: 147 PGKPGRPGERGV-VGPQGAR-------GFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVK 198
Query: 65 AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRF 124
E TP G A GLPG A R + VG
Sbjct: 199 GEPGAPGENGTP--------GQTGAR---GLPGERGRVGAPGPAGARGSDGSVGPVGPAG 247
Query: 125 NSGEVGLRPVGYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSP 180
G G P G+PG GE G A AG G RG+V G PG + GP +P
Sbjct: 248 PIGSAG--PPGFPGAPGPKGEIGAVGNAGPAGPA-GPRGEV---GLPGLSGPVGP-PGNP 300
Query: 181 RA----GPGAATWAPLVSGA 196
A G A P V+GA
Sbjct: 301 GANGLTGAKGAAGLPGVAGA 320
Score = 32.7 bits (73), Expect = 0.21
Identities = 40/148 (27%), Positives = 50/148 (33%), Gaps = 10/148 (6%)
Query: 49 TGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTA 108
+GL + G+PG E + E+ G A G PGPA + A
Sbjct: 639 SGLPGERGAAGIPGGKGEKGEPGLRG--EIGNPGRDGARGAPGAVGAPGPAGATGDRGEA 696
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
G GEVG P G P G G A A PG +G+ A G G
Sbjct: 697 GAAGPAGPAGPRGSPGERGEVG--PAG-PNG-----FAGPAGAAGQPGAKGERGAKGPKG 748
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSGA 196
GP AGP P +G+
Sbjct: 749 ENGVVGPTGPVGAAGPAGPNGPPGPAGS 776
Score = 32.0 bits (71), Expect = 0.35
Identities = 43/138 (31%), Positives = 47/138 (34%), Gaps = 21/138 (15%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVG 118
G PGAV G+ T + AGPA A G PG RG EVG
Sbjct: 676 GAPGAV--GAPGPAGATGDRGEAGAAGPAGPAGPRGSPGE-----RG----------EVG 718
Query: 119 TTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRT 177
+G G G PG GE G G G G V A G G GP
Sbjct: 719 PAGPNGFAGPAGA--AGQPGAKGERGAKGPKGENGV-VGPTGPVGAAGPAGPNGPPGPAG 775
Query: 178 SSPRAGPGAATWAPLVSG 195
S GP T P +G
Sbjct: 776 SRGDGGPPGMTGFPGAAG 793
Score = 30.8 bits (68), Expect = 0.79
Identities = 20/55 (36%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 133 PVGYPG-GGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPR-TSSPRAGPG 185
P G PG GG G GPG G + G PG A GP+ P PG
Sbjct: 67 PPGPPGLGGNFAAQYDGKGVGLGPGPMGLMGPRGPPGAAGAPGPQGFQGPAGEPG 121
Score = 30.8 bits (68), Expect = 0.79
Identities = 43/141 (30%), Positives = 47/141 (33%), Gaps = 33/141 (23%)
Query: 44 MGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSC 103
+GLP GL+ P G PGA + AG A GLPGP
Sbjct: 285 VGLP--GLSGPVGPPGNPGANGLTGAKGA-----------AGLPGVAGAPGLPGP--RGI 329
Query: 104 RGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAA 163
GP G T R GE G P G GESG PG G
Sbjct: 330 PGPVG-------AAGATGARGLVGEPG--PAG--SKGESGNK-------GEPGSAGPQGP 371
Query: 164 VGGPGTTWARGPRTSSPRAGP 184
G G RGP + AGP
Sbjct: 372 PGPSGEEGKRGPNGEAGSAGP 392
Score = 27.7 bits (60), Expect = 6.7
Identities = 44/137 (32%), Positives = 47/137 (34%), Gaps = 37/137 (27%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PA 99
P +GLP + R P GV GAV E P P +AGP A G G P
Sbjct: 870 PGILGLPGSR-GERGLP-GVAGAVGE-------PGP----LGIAGPPGARGPPGAVGSPG 916
Query: 100 ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGR 158
N G E G N G G G PG GE G PG
Sbjct: 917 VNGAPG----------EAGRDGNPGNDGPPGRD--GQPGHKGERGY----------PGNI 954
Query: 159 GKVAAVGGPGTTWARGP 175
G V A G PG GP
Sbjct: 955 GPVGAAGAPGPHGPVGP 971
Score = 27.3 bits (59), Expect = 8.7
Identities = 30/92 (32%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 93 TGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAG 152
TG PGP GP G G +++ VGL P G G GAA A
Sbjct: 59 TGPPGPPGPP--GPPGLG-------GNFAAQYDGKGVGLGPGPMGLMGPRGPP-GAAGA- 107
Query: 153 TGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
PG +G G PG GP + AGP
Sbjct: 108 --PGPQGFQGPAGEPGEPGQTGPAGARGPAGP 137
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 40.0 bits (92), Expect = 0.001
Identities = 54/160 (33%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAA 100
P T GLP R +P G+ GA E V G + + G PGP
Sbjct: 278 PGTPGLPGVK-GHRGYP-GLDGAKGEAGAPGVK-----------GESGSPGENGSPGPMG 324
Query: 101 NSCRG-PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGR 158
RG P GR T G R N G+ G P G PG G +G GPG
Sbjct: 325 P--RGLPGERGR--TGPAGAAGARGNDGQPG--PAGPPGPVGPAG----------GPGFP 368
Query: 159 GKVAAVGGPGTTWARGPR-TSSPRAGPGAATWAPLVSGAS 197
G A G G T ARGP PR PG +P +GAS
Sbjct: 369 GAPGAKGEAGPTGARGPEGAQGPRGEPG-TPGSPGPAGAS 407
Score = 36.2 bits (82), Expect = 0.019
Identities = 47/153 (30%), Positives = 53/153 (34%), Gaps = 20/153 (13%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAA---ATFTGLPGPAANSCR 104
D G K P G PG P GPA A G PGPA +
Sbjct: 766 DRGDVGEKGPEGAPGKDGGRGLTGPIGPP--------GPAGANGEKGEVGPPGPAGS--- 814
Query: 105 GPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAGTGPGGRGKVA 162
A R E G T +G G G PG GE G AG PG +G
Sbjct: 815 ---AGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA-PGPQGPSG 870
Query: 163 AVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
A G G T GP+ + GP AT P +G
Sbjct: 871 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 903
Score = 35.4 bits (80), Expect = 0.032
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGGGESG 143
G + F GLPGP G + E G G VG R G+PG E G
Sbjct: 657 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP------GLVGPRGERGFPG--ERG 708
Query: 144 TTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
+ PG +G G PGT GP+ +S AGP A P + G
Sbjct: 709 S----------PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 750
Score = 33.9 bits (76), Expect = 0.093
Identities = 38/105 (36%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 83 LAGPAAAATFTGLPGPAANSCR--GPTAWG-RVTTCEVGTTWGRFNSGEVGLRPVGYPGG 139
L G F GLPGP+ + P A G R VG +GE G G PG
Sbjct: 985 LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGRE--GSPGA 1042
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
GAA G RG+ AVG PG A GP S AGP
Sbjct: 1043 DGPPGRDGAAGV---KGDRGETGAVGAPG---APGPPGSPGPAGP 1081
Score = 33.1 bits (74), Expect = 0.16
Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 24/136 (17%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAA-NSCRGPTAWGRVTTC 115
P G PG +G+ + P + +AG G PGPA GP
Sbjct: 436 PRGPPGP--QGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAG------- 486
Query: 116 EVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGP 175
E G R G VG P+G PG E G PG RG G G A G
Sbjct: 487 EEGKRGARGEPGGVG--PIGPPG--ERGA----------PGNRGFPGQDGLAGPKGAPGE 532
Query: 176 RTSSPRAGPGAATWAP 191
R S AGP A P
Sbjct: 533 RGPSGLAGPKGANGDP 548
Score = 32.7 bits (73), Expect = 0.21
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG--GES 142
GP+ A G+ GP +GP + E G + + G GL+ + P G G+
Sbjct: 1098 GPSGPAGARGIQGP-----QGPRG-DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1151
Query: 143 GTTCGAATAGT----GP-GGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
G + A +G GP G GK A G PG GPR S GP P
Sbjct: 1152 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNP 1205
Score = 31.6 bits (70), Expect = 0.46
Identities = 45/160 (28%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 57 PMGVPG-AVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRV-TT 114
P+G PG A A G V P G TG PGPA + P A G+
Sbjct: 790 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA-GPPGADGQPGAK 848
Query: 115 CEVGTTWGRFNSGEVGLR-PVGYPGG-GESGTTC-----------------GAATAGTGP 155
E G + ++G G + P G PG G +G T GAA P
Sbjct: 849 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 908
Query: 156 GGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G G PG + GP+ + +GP P + G
Sbjct: 909 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 948
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/147 (28%), Positives = 49/147 (33%), Gaps = 10/147 (6%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCRGPTAWGRV 112
P G PG EGS A P + G G PG P + GPT +
Sbjct: 1030 PAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG-KQG 1086
Query: 113 TTCEVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATAGTGPGGRGKVAAVGGPGTT 170
E G SG G R + P G G+ G G G RG G PG
Sbjct: 1087 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL-KGHRGFTGLQGLPGPP 1145
Query: 171 WARGPRTSSPRAGPGAATWAPLVSGAS 197
G + +S AGP P G S
Sbjct: 1146 GPSGDQGASGPAGPSGPRGPPGPVGPS 1172
Score = 29.3 bits (64), Expect = 2.3
Identities = 34/110 (30%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 85 GPAAAATFTGLPGPAANS----CRG-PTAWGRV-TTCEVGTTWGRFNSGEVGLR-PVGYP 137
GPA G PGPA RG P G + E G R G+ GL P G P
Sbjct: 474 GPAGPQ---GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 530
Query: 138 GGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAA 187
G G A PG G+ G G T G + GP A
Sbjct: 531 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGA 580
Score = 28.9 bits (63), Expect = 3.0
Identities = 48/169 (28%), Positives = 60/169 (35%), Gaps = 18/169 (10%)
Query: 35 PCCTATPVTMGLP-DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFT 93
P P G+P + G A P G G V E P + R L GP
Sbjct: 740 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGA-PGKDGGR-GLTGPI------ 791
Query: 94 GLPGPA-ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR----PVGYPGGGESGTTCGA 148
G PGPA AN +G G+ R GE G P G+ G + GA
Sbjct: 792 GPPGPAGANGEKGEVG----PPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 847
Query: 149 ATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGAS 197
G +G A G G + A GP+ + GP A A GA+
Sbjct: 848 KGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 896
Score = 28.9 bits (63), Expect = 3.0
Identities = 39/117 (33%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR-PVGYPGG-GES 142
GP + G PGP S + R + G +GE GL+ P G PG GE
Sbjct: 906 GPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG------RAGEPGLQGPAGPPGEKGEP 959
Query: 143 GTTCGAATAGTGPGGRGKV---AAVGGPGTTWARG-PRTSSPRAGPGAATWAPLVSG 195
G G + A PG +G VG PG RG P P PG AP SG
Sbjct: 960 GDD-GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG-KQGAPGASG 1014
Score = 28.5 bits (62), Expect = 3.9
Identities = 42/147 (28%), Positives = 46/147 (31%), Gaps = 29/147 (19%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCRGPTAWGRV 112
P G PG E R P + GP G PG P + GP
Sbjct: 478 PQGAPGPAGEEGKRGARGEPGGV-----GPIGPPGERGAPGNRGFPGQDGLAGPK----- 527
Query: 113 TTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAGT--GPGGRGKVAAVGGPG 168
G R SG G + G PG GE G G G +GKV G PG
Sbjct: 528 -----GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG 582
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
GP GP A P V G
Sbjct: 583 EDGRPGP------PGPQGARGQPGVMG 603
Score = 28.5 bits (62), Expect = 3.9
Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 49 TGLARRKFPMGVPGAVAEGS---CRAVTPTP-ELMRCTLAGPAAAATFTGLPGPAANSCR 104
+GLA K G PG E R +T P + GP+ A G PGP
Sbjct: 536 SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP----- 590
Query: 105 GPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAV 164
GP R +G + +GE G GE G G PG G+ A
Sbjct: 591 GPQG-ARGQPGVMGFPGPKGANGEPGK-------AGEKGLPGAPGLRGL-PGKDGETGAA 641
Query: 165 GGPGTTWARGPRTSSPRAGPGAATWAP 191
G PG G R GP P
Sbjct: 642 GPPGPAGPAGERGEQGAPGPSGFQGLP 668
Score = 28.1 bits (61), Expect = 5.1
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 126 SGEVGLR----PVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSP 180
SG +G R P G PG GE+G A G PG +G G PG +G R
Sbjct: 236 SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP-PGPQGARGFPGTPGLPGVKGHRGYPG 294
Query: 181 RAGPGAATWAPLVSGAS 197
G AP V G S
Sbjct: 295 LDGAKGEAGAPGVKGES 311
Score = 28.1 bits (61), Expect = 5.1
Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 83 LAGPAAAATFTGLPG-PAANSCRGPTA-------WGRVTTCEVGTTWGRFNS-GEVGLRP 133
LAGP A G PG P RG T G+V GR G G R
Sbjct: 538 LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 597
Query: 134 ----VGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATW 189
+G+PG + G A PG G G G T A GP + AG
Sbjct: 598 QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG 657
Query: 190 APLVSG 195
AP SG
Sbjct: 658 APGPSG 663
Score = 27.3 bits (59), Expect = 8.7
Identities = 39/148 (26%), Positives = 47/148 (31%), Gaps = 11/148 (7%)
Query: 44 MGLP----DTGLARRKFPMGVPGAV-AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGP 98
+GLP + G P G PG A G+ P + L GPA G PG
Sbjct: 983 VGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGA 1042
Query: 99 AANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGR 158
R A + E G G G P G + A GP G
Sbjct: 1043 DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGP 1102
Query: 159 GKVAAVGGPGTTWARGPRTSSPRAG-PG 185
+ GP +GPR AG PG
Sbjct: 1103 AGARGIQGP-----QGPRGDKGEAGEPG 1125
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 40.0 bits (92), Expect = 0.001
Identities = 54/160 (33%), Positives = 62/160 (38%), Gaps = 33/160 (20%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAA 100
P T GLP R +P G+ GA E V G + + G PGP
Sbjct: 209 PGTPGLPGVK-GHRGYP-GLDGAKGEAGAPGVK-----------GESGSPGENGSPGPMG 255
Query: 101 NSCRG-PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGR 158
RG P GR T G R N G+ G P G PG G +G GPG
Sbjct: 256 P--RGLPGERGR--TGPAGAAGARGNDGQPG--PAGPPGPVGPAG----------GPGFP 299
Query: 159 GKVAAVGGPGTTWARGPR-TSSPRAGPGAATWAPLVSGAS 197
G A G G T ARGP PR PG +P +GAS
Sbjct: 300 GAPGAKGEAGPTGARGPEGAQGPRGEPG-TPGSPGPAGAS 338
Score = 36.2 bits (82), Expect = 0.019
Identities = 47/153 (30%), Positives = 53/153 (34%), Gaps = 20/153 (13%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAA---ATFTGLPGPAANSCR 104
D G K P G PG P GPA A G PGPA +
Sbjct: 697 DRGDVGEKGPEGAPGKDGGRGLTGPIGPP--------GPAGANGEKGEVGPPGPAGS--- 745
Query: 105 GPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAGTGPGGRGKVA 162
A R E G T +G G G PG GE G AG PG +G
Sbjct: 746 ---AGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAGA-PGPQGPSG 801
Query: 163 AVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
A G G T GP+ + GP AT P +G
Sbjct: 802 APGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 834
Score = 35.4 bits (80), Expect = 0.032
Identities = 35/112 (31%), Positives = 43/112 (38%), Gaps = 19/112 (16%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGGGESG 143
G + F GLPGP G + E G G VG R G+PG E G
Sbjct: 588 GAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAP------GLVGPRGERGFPG--ERG 639
Query: 144 TTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
+ PG +G G PGT GP+ +S AGP A P + G
Sbjct: 640 S----------PGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGPPGLQG 681
Score = 33.9 bits (76), Expect = 0.093
Identities = 38/105 (36%), Positives = 42/105 (40%), Gaps = 11/105 (10%)
Query: 83 LAGPAAAATFTGLPGPAANSCR--GPTAWG-RVTTCEVGTTWGRFNSGEVGLRPVGYPGG 139
L G F GLPGP+ + P A G R VG +GE G G PG
Sbjct: 916 LPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGRE--GSPGA 973
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
GAA G RG+ AVG PG A GP S AGP
Sbjct: 974 DGPPGRDGAAGV---KGDRGETGAVGAPG---APGPPGSPGPAGP 1012
Score = 33.1 bits (74), Expect = 0.16
Identities = 42/136 (30%), Positives = 48/136 (35%), Gaps = 24/136 (17%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAA-NSCRGPTAWGRVTTC 115
P G PG +G+ + P + +AG G PGPA GP
Sbjct: 367 PRGPPGP--QGATGPLGPKGQTGEPGIAGFKGEQGPKGEPGPAGPQGAPGPAG------- 417
Query: 116 EVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGP 175
E G R G VG P+G PG E G PG RG G G A G
Sbjct: 418 EEGKRGARGEPGGVG--PIGPPG--ERGA----------PGNRGFPGQDGLAGPKGAPGE 463
Query: 176 RTSSPRAGPGAATWAP 191
R S AGP A P
Sbjct: 464 RGPSGLAGPKGANGDP 479
Score = 32.7 bits (73), Expect = 0.21
Identities = 35/114 (30%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG--GES 142
GP+ A G+ GP +GP + E G + + G GL+ + P G G+
Sbjct: 1029 GPSGPAGARGIQGP-----QGPRG-DKGEAGEPGERGLKGHRGFTGLQGLPGPPGPSGDQ 1082
Query: 143 GTTCGAATAGT----GP-GGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
G + A +G GP G GK A G PG GPR S GP P
Sbjct: 1083 GASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPAGPPGNP 1136
Score = 31.6 bits (70), Expect = 0.46
Identities = 45/160 (28%), Positives = 58/160 (36%), Gaps = 22/160 (13%)
Query: 57 PMGVPG-AVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRV-TT 114
P+G PG A A G V P G TG PGPA + P A G+
Sbjct: 721 PIGPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFA-GPPGADGQPGAK 779
Query: 115 CEVGTTWGRFNSGEVGLR-PVGYPGG-GESGTTC-----------------GAATAGTGP 155
E G + ++G G + P G PG G +G T GAA P
Sbjct: 780 GEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPP 839
Query: 156 GGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G G PG + GP+ + +GP P + G
Sbjct: 840 GSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQG 879
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/147 (28%), Positives = 49/147 (33%), Gaps = 10/147 (6%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCRGPTAWGRV 112
P G PG EGS A P + G G PG P + GPT +
Sbjct: 961 PAGEPGR--EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTG-KQG 1017
Query: 113 TTCEVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATAGTGPGGRGKVAAVGGPGTT 170
E G SG G R + P G G+ G G G RG G PG
Sbjct: 1018 DRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGL-KGHRGFTGLQGLPGPP 1076
Query: 171 WARGPRTSSPRAGPGAATWAPLVSGAS 197
G + +S AGP P G S
Sbjct: 1077 GPSGDQGASGPAGPSGPRGPPGPVGPS 1103
Score = 29.3 bits (64), Expect = 2.3
Identities = 34/110 (30%), Positives = 38/110 (34%), Gaps = 10/110 (9%)
Query: 85 GPAAAATFTGLPGPAANS----CRG-PTAWGRV-TTCEVGTTWGRFNSGEVGLR-PVGYP 137
GPA G PGPA RG P G + E G R G+ GL P G P
Sbjct: 405 GPAGPQ---GAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQDGLAGPKGAP 461
Query: 138 GGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAA 187
G G A PG G+ G G T G + GP A
Sbjct: 462 GERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGA 511
Score = 28.9 bits (63), Expect = 3.0
Identities = 48/169 (28%), Positives = 60/169 (35%), Gaps = 18/169 (10%)
Query: 35 PCCTATPVTMGLP-DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFT 93
P P G+P + G A P G G V E P + R L GP
Sbjct: 671 PGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGA-PGKDGGR-GLTGPI------ 722
Query: 94 GLPGPA-ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR----PVGYPGGGESGTTCGA 148
G PGPA AN +G G+ R GE G P G+ G + GA
Sbjct: 723 GPPGPAGANGEKGEVG----PPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGA 778
Query: 149 ATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGAS 197
G +G A G G + A GP+ + GP A A GA+
Sbjct: 779 KGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGAT 827
Score = 28.9 bits (63), Expect = 3.0
Identities = 39/117 (33%), Positives = 46/117 (39%), Gaps = 14/117 (11%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR-PVGYPGG-GES 142
GP + G PGP S + R + G +GE GL+ P G PG GE
Sbjct: 837 GPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPG------RAGEPGLQGPAGPPGEKGEP 890
Query: 143 GTTCGAATAGTGPGGRGKV---AAVGGPGTTWARG-PRTSSPRAGPGAATWAPLVSG 195
G G + A PG +G VG PG RG P P PG AP SG
Sbjct: 891 GDD-GPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPG-KQGAPGASG 945
Score = 28.5 bits (62), Expect = 3.9
Identities = 42/147 (28%), Positives = 46/147 (31%), Gaps = 29/147 (19%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCRGPTAWGRV 112
P G PG E R P + GP G PG P + GP
Sbjct: 409 PQGAPGPAGEEGKRGARGEPGGV-----GPIGPPGERGAPGNRGFPGQDGLAGPK----- 458
Query: 113 TTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAGT--GPGGRGKVAAVGGPG 168
G R SG G + G PG GE G G G +GKV G PG
Sbjct: 459 -----GAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPG 513
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
GP GP A P V G
Sbjct: 514 EDGRPGP------PGPQGARGQPGVMG 534
Score = 28.5 bits (62), Expect = 3.9
Identities = 41/147 (27%), Positives = 49/147 (33%), Gaps = 18/147 (12%)
Query: 49 TGLARRKFPMGVPGAVAEGS---CRAVTPTP-ELMRCTLAGPAAAATFTGLPGPAANSCR 104
+GLA K G PG E R +T P + GP+ A G PGP
Sbjct: 467 SGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPP----- 521
Query: 105 GPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAV 164
GP R +G + +GE G GE G G PG G+ A
Sbjct: 522 GPQG-ARGQPGVMGFPGPKGANGEPGK-------AGEKGLPGAPGLRGL-PGKDGETGAA 572
Query: 165 GGPGTTWARGPRTSSPRAGPGAATWAP 191
G PG G R GP P
Sbjct: 573 GPPGPAGPAGERGEQGAPGPSGFQGLP 599
Score = 28.1 bits (61), Expect = 5.1
Identities = 27/77 (35%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 126 SGEVGLR----PVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSP 180
SG +G R P G PG GE+G A G PG +G G PG +G R
Sbjct: 167 SGPMGPRGPPGPPGKPGDDGEAGKPGKAGERGP-PGPQGARGFPGTPGLPGVKGHRGYPG 225
Query: 181 RAGPGAATWAPLVSGAS 197
G AP V G S
Sbjct: 226 LDGAKGEAGAPGVKGES 242
Score = 28.1 bits (61), Expect = 5.1
Identities = 39/126 (30%), Positives = 44/126 (34%), Gaps = 13/126 (10%)
Query: 83 LAGPAAAATFTGLPG-PAANSCRGPTA-------WGRVTTCEVGTTWGRFNS-GEVGLRP 133
LAGP A G PG P RG T G+V GR G G R
Sbjct: 469 LAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARG 528
Query: 134 ----VGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATW 189
+G+PG + G A PG G G G T A GP + AG
Sbjct: 529 QPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGEQG 588
Query: 190 APLVSG 195
AP SG
Sbjct: 589 APGPSG 594
Score = 27.3 bits (59), Expect = 8.7
Identities = 39/148 (26%), Positives = 47/148 (31%), Gaps = 11/148 (7%)
Query: 44 MGLP----DTGLARRKFPMGVPGAV-AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGP 98
+GLP + G P G PG A G+ P + L GPA G PG
Sbjct: 914 VGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPAGEPGREGSPGA 973
Query: 99 AANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGR 158
R A + E G G G P G + A GP G
Sbjct: 974 DGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGPMGPSGP 1033
Query: 159 GKVAAVGGPGTTWARGPRTSSPRAG-PG 185
+ GP +GPR AG PG
Sbjct: 1034 AGARGIQGP-----QGPRGDKGEAGEPG 1056
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 40.0 bits (92), Expect = 0.001
Identities = 39/111 (35%), Positives = 45/111 (40%), Gaps = 18/111 (16%)
Query: 93 TGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAAT 150
TG PGP N A G G G +G G G PGG G+ G AA
Sbjct: 195 TGGPGPNPNPTPSCGANG-------GGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAA 247
Query: 151 AGTGPGGR-----GKVAAVGGPGTTWARGPR--TSSPRA--GPGAATWAPL 192
A G +AA GGPG WA GP TS P + GP A+ + L
Sbjct: 248 AAAAAAAAAAAAAGGLAAAGGPGQGWAPGPGPITSIPDSLGGPFASVLSSL 298
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/145 (31%), Positives = 52/145 (35%), Gaps = 17/145 (11%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCRGPTAWGRV 112
P GVPG R P GPA G PG P A+ GP
Sbjct: 282 PPGVPGIDGIDGDRGPKGPPGP-----PGPAGEPGKPGAPGKPGTPGADGLTGPDG---- 332
Query: 113 TTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWA 172
+ +G+ + G G R G+PG G G TAG PG G+V VG PG
Sbjct: 333 SPGSIGSKGQKGEPGVPGSR--GFPGRGIPGPPGPPGTAGL-PGELGRVGPVGDPGRRGP 389
Query: 173 RG-PRTSSPRAGPGAATWAPLVSGA 196
G P PR G PL A
Sbjct: 390 PGPPGPPGPRGTIGFHDGDPLCPNA 414
Score = 34.3 bits (77), Expect = 0.071
Identities = 45/139 (32%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAW 109
GL P G+PGA + R P E G A GLPGP ++ P
Sbjct: 487 GLDGEPGPQGLPGAPGDQGQRG--PPGEAGPKGDRGAEGARGIPGLPGPKGDTGL-PGVD 543
Query: 110 GRV-------TTCEVGTTWGRFNSGEVGLRPV-GYPGG----GESGTTCGAATAGTGPGG 157
GR T E G ++G GL V G PG GE G+T GA G
Sbjct: 544 GRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGST-GAPGKPGQMGN 602
Query: 158 RGKVAAVGGPGTTWARGPR 176
GK G PG RGP+
Sbjct: 603 SGKPGQQGPPGEVGPRGPQ 621
Score = 32.0 bits (71), Expect = 0.35
Identities = 38/114 (33%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 93 TGLPGPAANSCRGPTAWGRVTTC---------EVGTTWGRFNSGEVGLR----PVGYPGG 139
TGLPG R PT C E+ + R +SG GL P G PG
Sbjct: 744 TGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGP 803
Query: 140 -GESGTTCGAATAGTGPGGRGKVAAVG--GP----GTTWARGPRTSSPRAGPGA 186
GE+G G PG +G A+G GP G RGP P PGA
Sbjct: 804 PGENGFPGQMGIRGL-PGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGA 856
Score = 30.0 bits (66), Expect = 1.3
Identities = 43/147 (29%), Positives = 50/147 (34%), Gaps = 23/147 (15%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWG-RVTTC 115
P G+PG+ E P + G + GLPGP P G R
Sbjct: 620 PQGLPGSRGELGPVGSPGLPGKL-----GSLGSPGLPGLPGPPGL----PGMKGDRGVVG 670
Query: 116 EVGTTWGRFNSGEVG-------LRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
E G + SGE G L +G PG S G PG RG + G PG
Sbjct: 671 EPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGE------PGLRGPEGSRGLPG 724
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
RGP G AT P V G
Sbjct: 725 VEGPRGPPGPRGVQGEQGATGLPGVQG 751
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 38.9 bits (89), Expect = 0.003
Identities = 45/145 (31%), Positives = 52/145 (35%), Gaps = 17/145 (11%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCRGPTAWGRV 112
P GVPG R P GPA G PG P A+ GP
Sbjct: 39 PPGVPGIDGIDGDRGPKGPPGP-----PGPAGEPGKPGAPGKPGTPGADGLTGPDG---- 89
Query: 113 TTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWA 172
+ +G+ + G G R G+PG G G TAG PG G+V VG PG
Sbjct: 90 SPGSIGSKGQKGEPGVPGSR--GFPGRGIPGPPGPPGTAGL-PGELGRVGPVGDPGRRGP 146
Query: 173 RG-PRTSSPRAGPGAATWAPLVSGA 196
G P PR G PL A
Sbjct: 147 PGPPGPPGPRGTIGFHDGDPLCPNA 171
Score = 34.3 bits (77), Expect = 0.071
Identities = 45/139 (32%), Positives = 53/139 (38%), Gaps = 16/139 (11%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAW 109
GL P G+PGA + R P E G A GLPGP ++ P
Sbjct: 244 GLDGEPGPQGLPGAPGDQGQRG--PPGEAGPKGDRGAEGARGIPGLPGPKGDTGL-PGVD 300
Query: 110 GRV-------TTCEVGTTWGRFNSGEVGLRPV-GYPGG----GESGTTCGAATAGTGPGG 157
GR T E G ++G GL V G PG GE G+T GA G
Sbjct: 301 GRDGIPGMPGTKGEPGKPGPPGDAGLQGLPGVPGIPGAKGVAGEKGST-GAPGKPGQMGN 359
Query: 158 RGKVAAVGGPGTTWARGPR 176
GK G PG RGP+
Sbjct: 360 SGKPGQQGPPGEVGPRGPQ 378
Score = 32.0 bits (71), Expect = 0.35
Identities = 38/114 (33%), Positives = 44/114 (38%), Gaps = 21/114 (18%)
Query: 93 TGLPGPAANSCRGPTAWGRVTTC---------EVGTTWGRFNSGEVGLR----PVGYPGG 139
TGLPG R PT C E+ + R +SG GL P G PG
Sbjct: 501 TGLPGVQGPPGRAPTDQHIKQVCMRVIQEHFAEMAASLKRPDSGATGLPGRPGPPGPPGP 560
Query: 140 -GESGTTCGAATAGTGPGGRGKVAAVG--GP----GTTWARGPRTSSPRAGPGA 186
GE+G G PG +G A+G GP G RGP P PGA
Sbjct: 561 PGENGFPGQMGIRGL-PGIKGPPGALGLRGPKGDLGEKGERGPPGRGPNGLPGA 613
Score = 30.0 bits (66), Expect = 1.3
Identities = 43/147 (29%), Positives = 50/147 (34%), Gaps = 23/147 (15%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWG-RVTTC 115
P G+PG+ E P + G + GLPGP P G R
Sbjct: 377 PQGLPGSRGELGPVGSPGLPGKL-----GSLGSPGLPGLPGPPGL----PGMKGDRGVVG 427
Query: 116 EVGTTWGRFNSGEVG-------LRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
E G + SGE G L +G PG S G PG RG + G PG
Sbjct: 428 EPGPKGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGE------PGLRGPEGSRGLPG 481
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
RGP G AT P V G
Sbjct: 482 VEGPRGPPGPRGVQGEQGATGLPGVQG 508
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 38.5 bits (88), Expect = 0.004
Identities = 41/112 (36%), Positives = 45/112 (40%), Gaps = 13/112 (11%)
Query: 80 RCTLAGPAAAATFTGLPGPAANSCRGPTAWG--RVTTCEVGTTWGRFNSGEVGLRPVGYP 137
R L GPA TG PGP GP G + +VG R G G P G P
Sbjct: 554 RLALRGPAGPMGLTGRPGPV-----GPPGSGGLKGEPGDVGPQGPRGVQGPPG--PAGKP 606
Query: 138 G-GGESGTTCGAATAG-TGP-GGRGKVAAVGGPGTTWARG-PRTSSPRAGPG 185
G G +G+ G TGP G RG G PG RG P S P PG
Sbjct: 607 GRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGDPGPSGPPGPPG 658
Score = 32.0 bits (71), Expect = 0.35
Identities = 58/202 (28%), Positives = 70/202 (34%), Gaps = 34/202 (16%)
Query: 9 RARPGAGGRTWETSM--LVGKVAVRMILPCCTATPVTMGLP--DTGLARRKFP--MGVPG 62
R PG G E + L GK + P GLP D R FP G+PG
Sbjct: 1014 RGHPGPPGPPGEQGLPGLAGKEGTK-------GDPGPAGLPGKDGPPGLRGFPGDRGLPG 1066
Query: 63 AVA----EGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAANSCRGPTAWGRVTTCEV 117
V +G+ P GPA AA G+PG P GP
Sbjct: 1067 PVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIGIPGRPGPQGPPGPAGEKGAP---- 1122
Query: 118 GTTWGRFNSGEVGLR-PVGYPGG-------GESGTTCGAATAGTGPGGRGKVAAVGGPGT 169
G + +G GL+ PVG PG GE G G G +G G PG
Sbjct: 1123 GEKGPQGPAGRDGLQGPVGLPGPAGPVGPPGEDGDKGEIGEPGQ-KGSKGDKGEQGPPGP 1181
Query: 170 TWARGPRTSSPRAGPGAATWAP 191
T +GP + GP A P
Sbjct: 1182 TGPQGP---IGQPGPSGADGEP 1200
Score = 31.2 bits (69), Expect = 0.60
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 94 GLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT 153
G PGPA GP + E G T +GE G P G PG G
Sbjct: 1351 GEPGPAGQD--GPPG-DKGDDGEPGQTGSPGPTGEPG--PSGPPGKRGPPGPAGPEGRQG 1405
Query: 154 GPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
G +G+ G PG T GP+ + + GP P
Sbjct: 1406 EKGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIP 1443
Score = 29.3 bits (64), Expect = 2.3
Identities = 44/151 (29%), Positives = 51/151 (33%), Gaps = 20/151 (13%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAW 109
GL R P+G PG+ G + GP G PGPA R A
Sbjct: 565 GLTGRPGPVGPPGS---GGLKGEPGD--------VGPQGPRGVQGPPGPAGKPGRRGRAG 613
Query: 110 GRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT-GPGG----RGKVAAV 164
G T + + G GL G PG E G +G GP G RG V
Sbjct: 614 SDGARGMPGQTGPKGDRGFDGL--AGLPG--EKGHRGDPGPSGPPGPPGDDGERGDDGEV 669
Query: 165 GGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G GPR GP P V+G
Sbjct: 670 GPRGLPGEPGPRGLLGPKGPPGPPGPPGVTG 700
Score = 29.3 bits (64), Expect = 2.3
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 134 VGYPG-GGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
+G+PG G +G G T G PG RG+ G G RGPR + + GP
Sbjct: 885 IGFPGFPGANGEKGGRGTPGK-PGPRGQRGPTGPRG---ERGPRGITGKPGP 932
Score = 29.3 bits (64), Expect = 2.3
Identities = 32/113 (28%), Positives = 37/113 (32%), Gaps = 17/113 (15%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESG 143
GP GLPGP +G T +VG G G P G PG G G
Sbjct: 1222 GPPGPVGLQGLPGPPGE--KGETG-------DVGQMGPPGPPGPRG--PSGAPGADGPQG 1270
Query: 144 TTCGAATAGT-----GPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
G G PG G+ G G +G R +GP A P
Sbjct: 1271 PPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPP 1323
Score = 28.9 bits (63), Expect = 3.0
Identities = 36/129 (27%), Positives = 43/129 (33%), Gaps = 28/129 (21%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVG 118
G PG EG P E +GP+ AA G GP + GP
Sbjct: 1291 GEPGLPGEGGPPG--PKGERGEKGESGPSGAAGPPGPKGPPGDD--GP------------ 1334
Query: 119 TTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGR---GKVAAVGGPGTTWARGP 175
G G PVG+PG G A PG + G+ G PG T GP
Sbjct: 1335 -------KGSPG--PVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGP 1385
Query: 176 RTSSPRAGP 184
+ GP
Sbjct: 1386 SGPPGKRGP 1394
Score = 28.1 bits (61), Expect = 5.1
Identities = 40/153 (26%), Positives = 49/153 (32%), Gaps = 17/153 (11%)
Query: 48 DTGLARRKFPMGVPGAVA-EGSCRAVTPTPELMRCTLAGPAAAATFTGL---------PG 97
+TG + P G PG V +G P E GP GL PG
Sbjct: 983 ETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAGKEGTKGDPG 1042
Query: 98 PAANSCR-GPTAW-----GRVTTCEVGTTWGRFNSGEVGLR-PVGYPGGGESGTTCGAAT 150
PA + GP R VG + N G G P G PG G
Sbjct: 1043 PAGLPGKDGPPGLRGFPGDRGLPGPVGALGLKGNEGPPGPPGPAGSPGERGPAGAAGPIG 1102
Query: 151 AGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAG 183
PG +G G G +GP+ + R G
Sbjct: 1103 IPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDG 1135
Score = 27.3 bits (59), Expect = 8.7
Identities = 35/120 (29%), Positives = 45/120 (37%), Gaps = 22/120 (18%)
Query: 85 GPAAAATFTGLPGP----AANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR----PVGY 136
GP G PGP A+ RG T E G G++G++ +G
Sbjct: 778 GPPGPQGPIGYPGPRGVKGADGIRGLKG----TKGEKGEDGFPGFKGDMGIKGDRGEIGP 833
Query: 137 PGG-GESGTTCGAATAGTG--------PGGRGKVAAVGGPGTTWARGPRTSSPRAG-PGA 186
PG GE G G PG +GK+ G PG +GP+ S G PGA
Sbjct: 834 PGPRGEDGPEGPKGRGGPNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSIGFPGFPGA 893
Score = 27.3 bits (59), Expect = 8.7
Identities = 45/160 (28%), Positives = 50/160 (31%), Gaps = 33/160 (20%)
Query: 56 FPMGVPGAVAEGSCRAVT--PTPELMRCTLA--GPAAAATFTGLPGPAANSCRGPTAWGR 111
FP G PGA E R P P R G TG PGP NS A
Sbjct: 887 FP-GFPGANGEKGGRGTPGKPGPRGQRGPTGPRGERGPRGITGKPGPKGNSGGDGPA--- 942
Query: 112 VTTCEVGTTWGRFNSGEVGLRPVGYPGG----------------GESGTTCGAATAGTGP 155
G R +G G P G+PG G+ G T G P
Sbjct: 943 ------GPPGERGPNGPQG--PTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGP-P 993
Query: 156 GGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G V G G T G R GP P ++G
Sbjct: 994 GPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGLAG 1033
Score = 27.3 bits (59), Expect = 8.7
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 24/138 (17%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGP-AANSCRGPTAWGRVTTC 115
P G PG P P+ +R + GP G PGP GP +
Sbjct: 1427 PQGAPGK----------PGPDGLR-GIPGPVGEQGLPGSPGPDGPPGPMGPPGLPGLKG- 1474
Query: 116 EVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGT-GPGGR-------GKVAAVGG 166
+ G + + G +GL +G PG GE G G+ GP G G + G
Sbjct: 1475 DSGPKGEKGHPGLIGL--IGPPGEQGEKGDRGLPGPQGSSGPKGEQGITGPSGPIGPPGP 1532
Query: 167 PGTTWARGPRTSSPRAGP 184
PG GP+ + +GP
Sbjct: 1533 PGLPGPPGPKGAKGSSGP 1550
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 38.1 bits (87), Expect = 0.005
Identities = 46/136 (33%), Positives = 56/136 (41%), Gaps = 11/136 (8%)
Query: 57 PMGVPGAV-AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTC 115
P G PGA A G + + AGPA G GPA +GP + T
Sbjct: 1044 PPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGP--QGPRG-DKGETG 1100
Query: 116 EVGTTWGRFNSGEVGLR-PVGYPGG-GESGTTCGAATAGT-GP----GGRGKVAAVGGPG 168
E G + + G GL+ P G PG GE G + + AG GP G GK G PG
Sbjct: 1101 EQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKDGLNGLPG 1160
Query: 169 TTWARGPRTSSPRAGP 184
GPR + AGP
Sbjct: 1161 PIGPPGPRGRTGDAGP 1176
Score = 37.4 bits (85), Expect = 0.008
Identities = 43/142 (30%), Positives = 50/142 (35%), Gaps = 20/142 (14%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCT----LAGPAAAATFTGLPGPAANSCRGPTAWGRV 112
P G PGA + + P + GP+ G PGP NS P A G
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE-PGAPG-- 440
Query: 113 TTCEVGTTWGRFNSGEVGLRPVGYPGG--------GESGTTCGAATAGT--GPGGRGKVA 162
G T + G VG++ P G GE G T G GPG RG
Sbjct: 441 ---SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPG 497
Query: 163 AVGGPGTTWARGPRTSSPRAGP 184
A G G G R S AGP
Sbjct: 498 ADGVAGPKGPAGERGSPGPAGP 519
Score = 35.8 bits (81), Expect = 0.024
Identities = 36/114 (31%), Positives = 39/114 (34%), Gaps = 8/114 (7%)
Query: 84 AGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESG 143
AGP A G PGP N R + G T +G VG P G G
Sbjct: 838 AGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVG--PPGPSGNAGPP 895
Query: 144 TTCGAATAGTGPGGRGKVAAVGGPGTTWARGP-----RTSSPRA-GPGAATWAP 191
G A G G RG+ G PG GP SP A GP A P
Sbjct: 896 GPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTP 949
Score = 34.7 bits (78), Expect = 0.054
Identities = 44/139 (31%), Positives = 51/139 (36%), Gaps = 32/139 (23%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCR-GPTAWGRVTTCEV 117
G PG R V P G F GLPGP+ + GP+
Sbjct: 947 GTPGPQGIAGQRGVVGLP--------GQRGERGFPGLPGPSGEPGKQGPS---------- 988
Query: 118 GTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPR 176
G + R G +G P G G GESG GA PG G G PG A+G R
Sbjct: 989 GASGERGPPGPMG--PPGLAGPPGESGRE-GA------PGAEGSPGRDGSPG---AKGDR 1036
Query: 177 TSSPRAGPGAATWAPLVSG 195
+ AGP A AP G
Sbjct: 1037 GETGPAGPPGAPGAPGAPG 1055
Score = 33.9 bits (76), Expect = 0.093
Identities = 46/150 (30%), Positives = 54/150 (36%), Gaps = 23/150 (15%)
Query: 57 PMGVPGAV-AEGSCRAVTPT----PELMRCTLA--GPAAAATFTGLPG----PAANSCRG 105
P G PGAV A+G P P+ +R GPA AA G PG P A G
Sbjct: 342 PPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANG 401
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVG 165
G R SG G P G PG + GA PG +G A G
Sbjct: 402 APGIAGAP----GFPGARGPSGPQG--PGGPPGPKGNSGEPGA------PGSKGDTGAKG 449
Query: 166 GPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
PG +GP + G A P +G
Sbjct: 450 EPGPVGVQGPPGPAGEEGKRGARGEPGPTG 479
Score = 33.9 bits (76), Expect = 0.093
Identities = 37/123 (30%), Positives = 46/123 (37%), Gaps = 16/123 (13%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGT---TWGRFNSGEVGLRPVGYPGG-- 139
GPA + F GLPGPA + ++G + R G G R V P G
Sbjct: 635 GPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPA 694
Query: 140 ---GESGT-----TCGAATAGTGPGGRGKVAAVGGPGTTWAR---GPRTSSPRAGPGAAT 188
G +G G A A PG +G G PG A GP+ AGP A
Sbjct: 695 GPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGAD 754
Query: 189 WAP 191
+P
Sbjct: 755 GSP 757
Score = 33.9 bits (76), Expect = 0.093
Identities = 40/117 (34%), Positives = 44/117 (37%), Gaps = 16/117 (13%)
Query: 85 GPAAAATFTGLPGPAANSC-RGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPG-GGES 142
GP+ A G PGPA +GP G T GEVG P G PG GE
Sbjct: 887 GPSGNAGPPGPPGPAGKEGGKGPR----------GETGPAGRPGEVG--PPGPPGPAGEK 934
Query: 143 GT--TCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGAS 197
G+ G A A PG +G G G RG R GP SGAS
Sbjct: 935 GSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGAS 991
Score = 32.3 bits (72), Expect = 0.27
Identities = 40/126 (31%), Positives = 45/126 (35%), Gaps = 32/126 (25%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG----- 139
GPA A G GP+ + GPT G R G G P G+ G
Sbjct: 773 GPAGAPGDKGESGPSGPA--GPTG-------ARGAPGDRGEPGPPG--PAGFAGPPGADG 821
Query: 140 -----GESGTTCGAATAG----TGPGGR-GKVAAVGGPGTTWARGPRTSSPRAGPGAATW 189
GE G AG GP G G + VG PG ARG AGP AT
Sbjct: 822 QPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGS------AGPPGATG 875
Query: 190 APLVSG 195
P +G
Sbjct: 876 FPGAAG 881
Score = 32.0 bits (71), Expect = 0.35
Identities = 32/100 (32%), Positives = 35/100 (35%), Gaps = 11/100 (11%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGT 144
GP A F G PG P A G E G + ++G G P G G
Sbjct: 806 GPPGPAGFAGPPGADGQ----PGAKG-----EPGDAGAKGDAGPPG--PAGPAGPPGPIG 854
Query: 145 TCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
GA A G G A G PG GP S AGP
Sbjct: 855 NVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGP 894
Score = 31.2 bits (69), Expect = 0.60
Identities = 34/106 (32%), Positives = 39/106 (36%), Gaps = 8/106 (7%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESG 143
GP GL GP S R + G+ + + GE G P G PG G G
Sbjct: 995 GPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETG--PAGPPGAPGAPG 1052
Query: 144 TTCGAATAGTGPGGRGKVAAVG--GP-GTTWARGPR-TSSPRAGPG 185
AG G RG+ G GP G ARGP PR G
Sbjct: 1053 APGPVGPAGKS-GDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKG 1097
Score = 31.2 bits (69), Expect = 0.60
Identities = 36/115 (31%), Positives = 41/115 (35%), Gaps = 9/115 (7%)
Query: 84 AGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG--GE 141
AGP A G PGP GP A E G G VG R P G G+
Sbjct: 1042 AGPPGAPGAPGAPGPV-----GP-AGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGD 1095
Query: 142 SGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
G T G G RG G PG + G + S +GP P +GA
Sbjct: 1096 KGETGEQGDRGI-KGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGA 1149
Score = 30.8 bits (68), Expect = 0.79
Identities = 33/106 (31%), Positives = 42/106 (39%), Gaps = 15/106 (14%)
Query: 85 GPAAAATFTGLPGPAA-NSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GES 142
GP GLPG A +G + G + ++G G P G PG GE+
Sbjct: 245 GPPGPQGARGLPGTAGLPGMKGHRGFS-------GLDGAKGDAGPAG--PKGEPGSPGEN 295
Query: 143 GTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAAT 188
G G PG RG+ G PG ARG ++ AGP T
Sbjct: 296 GAPGQMGPRGL-PGERGRP---GAPGPAGARGNDGATGAAGPPGPT 337
Score = 30.8 bits (68), Expect = 0.79
Identities = 51/170 (30%), Positives = 57/170 (33%), Gaps = 39/170 (22%)
Query: 48 DTGLARRKFPMGV---PGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCR 104
DTG P+GV PG E R P GP TGLPGP
Sbjct: 444 DTGAKGEPGPVGVQGPPGPAGEEGKRGARGEP--------GP------TGLPGPPGER-G 488
Query: 105 GPTAWGRVTTCEV----GTTWGRFNSGEVGLRPVGYPGG----------GESGTTCGAAT 150
GP + G V G R + G G P G PG G G T +
Sbjct: 489 GPGSRGFPGADGVAGPKGPAGERGSPGPAG--PKGSPGEAGRPGEAGLPGAKGLTGSPGS 546
Query: 151 AG----TGPGG-RGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G TGP G G+ G PG ARG GP A P +G
Sbjct: 547 PGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAG 596
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/158 (25%), Positives = 53/158 (33%), Gaps = 19/158 (12%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPT 107
+ G + P G+PG R P P R G A G PGP + GP
Sbjct: 294 ENGAPGQMGPRGLPGERG----RPGAPGPAGAR----GNDGATGAAGPPGPTGPA--GPP 343
Query: 108 AWGRVTTC--EVGTTWGRFNSGEVGLR-PVGYPGGGESGTTCGAATAGTGPGGRGK---- 160
+ E G R + G G+R G PG + G A PG +G
Sbjct: 344 GFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAP 403
Query: 161 --VAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
A G PG GP+ GP + P G+
Sbjct: 404 GIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPGS 441
Score = 29.6 bits (65), Expect = 1.8
Identities = 27/75 (36%), Positives = 30/75 (40%), Gaps = 4/75 (5%)
Query: 127 GEVGLRPVGYPGG--GESGTTCGAATAG-TGPGGR-GKVAAVGGPGTTWARGPRTSSPRA 182
GE G P G G G T A G TGP G G AVG G +GPR S
Sbjct: 308 GERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ 367
Query: 183 GPGAATWAPLVSGAS 197
G P +GA+
Sbjct: 368 GVRGEPGPPGPAGAA 382
Score = 29.6 bits (65), Expect = 1.8
Identities = 42/165 (25%), Positives = 52/165 (31%), Gaps = 22/165 (13%)
Query: 40 TPVTMGLPDT----GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGL 95
+P GLP G A + GVPG + P P R P G
Sbjct: 639 SPGFQGLPGPAGPPGEAGKPGEQGVPGDLG-------APGPSGARGERGFPGERGV-QGP 690
Query: 96 PGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-------GYPGGGESGTTCGA 148
PGPA + G + G GL+ + G PG G
Sbjct: 691 PGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGP 750
Query: 149 ATAGTGPGG---RGKVAAVGGPGTTWARGPRTSSPRAGPGAATWA 190
A PG RG +G PG A G + S +GP T A
Sbjct: 751 KGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795
Score = 29.3 bits (64), Expect = 2.3
Identities = 39/135 (28%), Positives = 50/135 (37%), Gaps = 30/135 (22%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCR-GPTA 108
G A R G+PGA + +T +P G TG PGPA R GP
Sbjct: 524 GEAGRPGEAGLPGA------KGLTGSP--------GSPGPDGKTGPPGPAGQDGRPGPP- 568
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
G R G+ G+ +G+PG + G A PG G V G G
Sbjct: 569 ---------GPPGAR---GQAGV--MGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDG 614
Query: 169 TTWARGPRTSSPRAG 183
A+GP + AG
Sbjct: 615 EAGAQGPPGPAGPAG 629
Score = 29.3 bits (64), Expect = 2.3
Identities = 43/147 (29%), Positives = 56/147 (38%), Gaps = 20/147 (13%)
Query: 45 GLPDT----GLARRKFPMGVPGAVAEGSCRAVT-PTPELMRCTLAGPAAAATFTGLPGPA 99
G P T G+A ++ +G+PG E + P+ E + GP+ A+ G PGP
Sbjct: 944 GAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGK---QGPSGASGERGPPGPM 1000
Query: 100 AN-SCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGG 157
GP E G G G G PG G+ G T A G PG
Sbjct: 1001 GPPGLAGPPG-------ESGREGAPGAEGSPGRD--GSPGAKGDRGETGPAGPPGA-PGA 1050
Query: 158 RGKVAAVGGPGTTWARGPRTSSPRAGP 184
G VG G + RG + AGP
Sbjct: 1051 PGAPGPVGPAGKSGDRGETGPAGPAGP 1077
Score = 28.9 bits (63), Expect = 3.0
Identities = 36/117 (30%), Positives = 41/117 (35%), Gaps = 14/117 (11%)
Query: 83 LAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GE 141
+AGP A G PGPA GP + E G G GL G PG G
Sbjct: 501 VAGPKGPAGERGSPGPA-----GPKG----SPGEAGRPGEAGLPGAKGL--TGSPGSPGP 549
Query: 142 SGTTCGAATAGTG--PGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
G T AG PG G A G G GP+ ++ G P GA
Sbjct: 550 DGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGA 606
Score = 28.9 bits (63), Expect = 3.0
Identities = 31/114 (27%), Positives = 36/114 (31%), Gaps = 14/114 (12%)
Query: 83 LAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGES 142
L GP G PG S GP+ G T R G+ G PG
Sbjct: 765 LTGPIGPPGPAGAPGDKGES--GPSG-------PAGPTGARGAPGDRG-----EPGPPGP 810
Query: 143 GTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
G A PG +G+ G G GP + GP AP GA
Sbjct: 811 AGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGA 864
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 38.1 bits (87), Expect = 0.005
Identities = 56/173 (32%), Positives = 63/173 (36%), Gaps = 33/173 (19%)
Query: 41 PVTMGLP----DTGLARRKFPMGVPGAVA-EGSCRAVTPT--PELMRC------TLAGPA 87
P GLP D G+ + P GVPG A G A+ P P L T G A
Sbjct: 364 PGVPGLPGLKGDEGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGAA 423
Query: 88 AAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-------- 139
GLPGP GP + E T + SG GLR P G
Sbjct: 424 GLPGRDGLPGPPGPP--GPPS----PEFETETLHNK-ESGFPGLRGEQGPKGNLGLKGIK 476
Query: 140 GESG-TTCGAATAGTGPGGR----GKVAAVGGPGTTWARGPRTSSPRAGPGAA 187
G+SG C TGP G G +G PG ARG R S GP A
Sbjct: 477 GDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAGA 529
Score = 35.8 bits (81), Expect = 0.024
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 15/162 (9%)
Query: 34 LPCCTATPVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPE----LMRCTLAGPAAA 89
LP P GLP GL P G+PG + P + C + G
Sbjct: 606 LPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGP 665
Query: 90 ATFTGLPG-PAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV----GYPG-GGESG 143
+ F G PG P RG T + G++ + G GL + G+PG GE G
Sbjct: 666 SGFPGTPGFPGPKGSRGLPG----TPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKG 721
Query: 144 TTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPG 185
G G G + + G PG+ A G + PG
Sbjct: 722 LPGFPGLPGK-DGLPGMIGSPGLPGSKGATGDIFGAENGAPG 762
Score = 29.3 bits (64), Expect = 2.3
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 94 GLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNS-GEVGLRPVGYPGGGESGTTCGAATAG 152
GLPGPA P + G + +G G+ S GE G P G+PG G T G
Sbjct: 234 GLPGPAGP----PPSTGELEF--MGFPKGKKGSKGEPG--PKGFPGISGPPGFPGLGTTG 285
Query: 153 TGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
+G+ G PG RGP S GP
Sbjct: 286 E----KGEKGEKGIPGLPGPRGPMGSEGVQGP 313
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 38.1 bits (87), Expect = 0.005
Identities = 56/173 (32%), Positives = 63/173 (36%), Gaps = 33/173 (19%)
Query: 41 PVTMGLP----DTGLARRKFPMGVPGAVA-EGSCRAVTPT--PELMRC------TLAGPA 87
P GLP D G+ + P GVPG A G A+ P P L T G A
Sbjct: 363 PGVPGLPGLKGDEGIQGLRGPSGVPGLPALSGVPGALGPQGFPGLKGDQGNPGRTTIGAA 422
Query: 88 AAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-------- 139
GLPGP GP + E T + SG GLR P G
Sbjct: 423 GLPGRDGLPGPPGPP--GPPS----PEFETETLHNK-ESGFPGLRGEQGPKGNLGLKGIK 475
Query: 140 GESG-TTCGAATAGTGPGGR----GKVAAVGGPGTTWARGPRTSSPRAGPGAA 187
G+SG C TGP G G +G PG ARG R S GP A
Sbjct: 476 GDSGFCACDGGVPNTGPPGEPGPPGPWGLIGLPGLKGARGDRGSGGAQGPAGA 528
Score = 35.8 bits (81), Expect = 0.024
Identities = 43/162 (26%), Positives = 58/162 (35%), Gaps = 15/162 (9%)
Query: 34 LPCCTATPVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPE----LMRCTLAGPAAA 89
LP P GLP GL P G+PG + P + C + G
Sbjct: 605 LPGEKGHPGPPGLPGNGLPGLPGPRGLPGDKGKDGLPGQQGLPGSKGITLPCIIPGSYGP 664
Query: 90 ATFTGLPG-PAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV----GYPG-GGESG 143
+ F G PG P RG T + G++ + G GL + G+PG GE G
Sbjct: 665 SGFPGTPGFPGPKGSRGLPG----TPGQPGSSGSKGEPGSPGLVHLPELPGFPGPRGEKG 720
Query: 144 TTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPG 185
G G G + + G PG+ A G + PG
Sbjct: 721 LPGFPGLPGK-DGLPGMIGSPGLPGSKGATGDIFGAENGAPG 761
Score = 29.3 bits (64), Expect = 2.3
Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 13/92 (14%)
Query: 94 GLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNS-GEVGLRPVGYPGGGESGTTCGAATAG 152
GLPGPA P + G + +G G+ S GE G P G+PG G T G
Sbjct: 233 GLPGPAGP----PPSTGELEF--MGFPKGKKGSKGEPG--PKGFPGISGPPGFPGLGTTG 284
Query: 153 TGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
+G+ G PG RGP S GP
Sbjct: 285 E----KGEKGEKGIPGLPGPRGPMGSEGVQGP 312
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 38.1 bits (87), Expect = 0.005
Identities = 42/129 (32%), Positives = 48/129 (37%), Gaps = 18/129 (13%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVG 118
G G A GS TP PEL T AG G AA++ R G
Sbjct: 75 GELGPAAAGSAPPPTPRPEL--ATAAGGYINGDAAVSEGYAADAFFITDGRSRRKASNAG 132
Query: 119 TTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTS 178
+ + P G GGG G + G+GPGGRG A G GT
Sbjct: 133 SAAAPSTASAAA--PDGDAGGGGGA---GGRSLGSGPGGRGGTRA--GAGT--------- 176
Query: 179 SPRAGPGAA 187
RAGPGAA
Sbjct: 177 EARAGPGAA 185
>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
Length = 1950
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 96 PGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGP 155
PG + G T WG V T G SG +G +G+ A T+GTG
Sbjct: 1727 PGSPGHFSGGTTEWGNVATTGAA---GENTSGALGSTEGSVEATTSAGSGNTAGTSGTGD 1783
Query: 156 GGRGKVAAVGGPGTTWARGPRTSSPRAGPGA 186
GPG T G SP A PGA
Sbjct: 1784 ---------TGPGNTAVSGTPVVSPGATPGA 1805
Score = 32.3 bits (72), Expect = 0.27
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 27/162 (16%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPA--AAATFTGLPGPAANSCR-------GPTAW 109
G AV GS TP T++G +A + T PG +A S GP+
Sbjct: 1618 GATPAVGGGS----TPGEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPSVG 1673
Query: 110 GRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG- 168
G+ T SG G + +G G +S T + G+ P G+ + G PG
Sbjct: 1674 GKTGATSSEATSSEGMSGVTG-QSLGSTAGSDSEITAKTSFTGSSPPGKLTRPSPGSPGH 1732
Query: 169 ------------TTWARGPRTSSPRAGPGAATWAPLVSGASD 198
TT A G TS + A +G+ +
Sbjct: 1733 FSGGTTEWGNVATTGAAGENTSGALGSTEGSVEATTSAGSGN 1774
Score = 32.0 bits (71), Expect = 0.35
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 63 AVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCR---GP-----TAWGRVTT 114
AV+ + + T + GP+ AA+ + ++ + GP T T+
Sbjct: 1503 AVSTTTATTILSTGAAITLVTGGPSTAASIPAITTSSSETTGTTLGPLTEPFTTGITETS 1562
Query: 115 CEVGTTWGRFNSGEVGL-RPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP---GTT 170
+ +T G N+G G+ P G +GTT G A TG G P G T
Sbjct: 1563 VPIISTSG--NAGMTGVVSPTVTGASGMAGTTGGVDAATTGAASENTSERAGTPRVSGAT 1620
Query: 171 WARGPRTSSPRAGPGA 186
A G ++ AGPGA
Sbjct: 1621 PAVGGGSTPGEAGPGA 1636
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 37.4 bits (85), Expect = 0.008
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 137 PGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
P G SG + G+GP G GPGT P +P A GAA A G+
Sbjct: 488 PNAGRSGRDTSSTEVGSGPSDSGPTPPPTGPGTAPLTEPLPETPEAASGAAAAAASSCGS 547
Query: 197 S 197
+
Sbjct: 548 A 548
>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
sapiens]
Length = 2134
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 96 PGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGP 155
PG + G T WG V T G SG +G +G+ A T+GTG
Sbjct: 1911 PGSPGHFSGGTTEWGNVATTGAA---GENTSGALGSTEGSVEATTSAGSGNTAGTSGTGD 1967
Query: 156 GGRGKVAAVGGPGTTWARGPRTSSPRAGPGA 186
GPG T G SP A PGA
Sbjct: 1968 ---------TGPGNTAVSGTPVVSPGATPGA 1989
Score = 32.3 bits (72), Expect = 0.27
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 27/162 (16%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPA--AAATFTGLPGPAANSCR-------GPTAW 109
G AV GS TP T++G +A + T PG +A S GP+
Sbjct: 1802 GATPAVGGGS----TPGEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPSVG 1857
Query: 110 GRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG- 168
G+ T SG G + +G G +S T + G+ P G+ + G PG
Sbjct: 1858 GKTGATSSEATSSEGMSGVTG-QSLGSTAGSDSEITAKTSFTGSSPPGKLTRPSPGSPGH 1916
Query: 169 ------------TTWARGPRTSSPRAGPGAATWAPLVSGASD 198
TT A G TS + A +G+ +
Sbjct: 1917 FSGGTTEWGNVATTGAAGENTSGALGSTEGSVEATTSAGSGN 1958
Score = 32.0 bits (71), Expect = 0.35
Identities = 36/136 (26%), Positives = 54/136 (39%), Gaps = 14/136 (10%)
Query: 63 AVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCR---GP-----TAWGRVTT 114
AV+ + + T + GP+ AA+ + ++ + GP T T+
Sbjct: 1687 AVSTTTATTILSTGAAITLVTGGPSTAASIPAITTSSSETTGTTLGPLTEPFTTGITETS 1746
Query: 115 CEVGTTWGRFNSGEVGL-RPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP---GTT 170
+ +T G N+G G+ P G +GTT G A TG G P G T
Sbjct: 1747 VPIISTSG--NAGMTGVVSPTVTGASGMAGTTGGVDAATTGAASENTSERAGTPRVSGAT 1804
Query: 171 WARGPRTSSPRAGPGA 186
A G ++ AGPGA
Sbjct: 1805 PAVGGGSTPGEAGPGA 1820
>gi|113416182 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 37.4 bits (85), Expect = 0.008
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 137 PGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
P G SG + G+GP G GPGT P +P A GAA A G+
Sbjct: 488 PNAGRSGRDTSSTEVGSGPSDSGPTPPPTGPGTAPLTEPLPETPEAASGAAAAAASSCGS 547
Query: 197 S 197
+
Sbjct: 548 A 548
>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
sapiens]
Length = 2134
Score = 37.4 bits (85), Expect = 0.008
Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 96 PGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGP 155
PG + G T WG V T G SG +G +G+ A T+GTG
Sbjct: 1911 PGSPGHFSGGTTEWGNVATTGAA---GENTSGALGSTEGSVEATTSAGSGNTAGTSGTGD 1967
Query: 156 GGRGKVAAVGGPGTTWARGPRTSSPRAGPGA 186
GPG T G SP A PGA
Sbjct: 1968 ---------TGPGNTAVSGTPVVSPGATPGA 1989
Score = 31.6 bits (70), Expect = 0.46
Identities = 40/162 (24%), Positives = 58/162 (35%), Gaps = 27/162 (16%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPA--AAATFTGLPGPAANSCR-------GPTAW 109
G AV GS TP T++G +A + T PG +A S GP+
Sbjct: 1802 GETPAVGGGS----TPGEAGPGATVSGSTGVSAGSITASPGASATSSESSKSGTTGPSVG 1857
Query: 110 GRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG- 168
G+ T SG G + +G G +S T + G+ P G+ + G PG
Sbjct: 1858 GKTGATSSEATSSEGMSGVTG-QSLGSTAGSDSEITAKTSFTGSSPPGKLTRPSPGSPGH 1916
Query: 169 ------------TTWARGPRTSSPRAGPGAATWAPLVSGASD 198
TT A G TS + A +G+ +
Sbjct: 1917 FSGGTTEWGNVATTGAAGENTSGALGSTEGSVEATTSAGSGN 1958
>gi|113415686 PREDICTED: hypothetical protein LOC285556 [Homo
sapiens]
Length = 1826
Score = 37.4 bits (85), Expect = 0.008
Identities = 20/61 (32%), Positives = 25/61 (40%)
Query: 137 PGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSGA 196
P G SG + G+GP G GPGT P +P A GAA A G+
Sbjct: 488 PNAGRSGRDTSSTEVGSGPSDSGPTPPPTGPGTAPLTEPLPETPEAASGAAAAAASSCGS 547
Query: 197 S 197
+
Sbjct: 548 A 548
>gi|49574532 glycogen synthase kinase 3 alpha [Homo sapiens]
Length = 483
Score = 37.0 bits (84), Expect = 0.011
Identities = 31/90 (34%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 105 GPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG---GESGTTCGAATAGTGPGGRGKV 161
GP GR T G G G PGG G GT G A+ G GG G
Sbjct: 10 GPGGSGRARTSSFAEPGGGGGGGGGG------PGGSASGPGGTGGGKASVGAMGGGVGAS 63
Query: 162 AAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
++ GGPG + G GPGA T P
Sbjct: 64 SSGGGPGGSGGGG------SGGPGAGTSFP 87
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 37.0 bits (84), Expect = 0.011
Identities = 42/127 (33%), Positives = 50/127 (39%), Gaps = 12/127 (9%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAE-GSCRAVTPTPELMRCT----LAGPAAAATFTGL 95
P GLP G RK P G+PG E G V P + + GP A G+
Sbjct: 1342 PGEKGLP--GPPGRKGPTGLPGPRGEPGPPADVDDCPRIPGLPGAPGMRGPEGAMGLPGM 1399
Query: 96 PGPAANSCRG-PTAWGRVTTCEV-GTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAG 152
GP+ C+G P GR V G+ G+ G GYPGG G G G
Sbjct: 1400 RGPSGPGCKGEPGLDGRRGVDGVPGSPGPPGRKGDTG--EDGYPGGPGPPGPIGDPGPKG 1457
Query: 153 TGPGGRG 159
GPG G
Sbjct: 1458 FGPGYLG 1464
Score = 33.9 bits (76), Expect = 0.093
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 8/103 (7%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG----G 140
GP G+PGP +GP+ + G + G GL VG PG G
Sbjct: 1151 GPRGLQGDPGIPGPPG--IKGPSGSPGLNGLH-GLKGQKGTKGASGLHDVGPPGPVGIPG 1207
Query: 141 ESGTTCGAATAGTGPGG-RGKVAAVGGPGTTWARGPRTSSPRA 182
G + G P G RGK G PG++ GP ++ RA
Sbjct: 1208 LKGERGDPGSPGISPPGPRGKKGPPGPPGSSGPPGPAGATGRA 1250
Score = 30.4 bits (67), Expect = 1.0
Identities = 39/152 (25%), Positives = 50/152 (32%), Gaps = 51/152 (33%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAA---ATFTGLPGPAANSC- 103
D G + P G+PG + L GP A F G+PGP +SC
Sbjct: 787 DPGCPGAEGPAGIPGFLG-----------------LKGPKGREGHAGFPGVPGPPGHSCE 829
Query: 104 RGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAA 163
RG G+ GL GYPG + PGG+G+
Sbjct: 830 RGAPGI----------------PGQPGLP--GYPGSPGA------------PGGKGQPGD 859
Query: 164 VGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
VG PG +G R G P + G
Sbjct: 860 VGPPGPAGMKGLPGLPGRPGAHGPPGLPGIPG 891
Score = 29.6 bits (65), Expect = 1.8
Identities = 43/160 (26%), Positives = 55/160 (34%), Gaps = 32/160 (20%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAE----GSCRAVTPTPELMRCTLAGPAAAATFTGLP 96
P G P G+ K MG PG V + G V P + G GLP
Sbjct: 228 PGLKGNPGVGV---KGQMGDPGEVGQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGMVGLP 284
Query: 97 GPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPG 156
GP GR +G GE G+ G+PG + G+ PG
Sbjct: 285 GPP----------GRKGESGIGA------KGEKGIP--GFPGPRGDPGSYGSPGF---PG 323
Query: 157 GRGKVAAVGGPGTTWARGPRTSSPRAG----PGAATWAPL 192
+G++ VG PG GP+ G PG PL
Sbjct: 324 LKGELGLVGDPGLFGLIGPKGDPGNRGHPGPPGVLVTPPL 363
Score = 28.9 bits (63), Expect = 3.0
Identities = 40/141 (28%), Positives = 48/141 (34%), Gaps = 23/141 (16%)
Query: 57 PMGVPGAVAE----GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRV 112
P+G+PG E GS P P + GP +G PGPA + R P
Sbjct: 1202 PVGIPGLKGERGDPGSPGISPPGPRGKK----GPPGPPGSSGPPGPAGATGRAPK----- 1252
Query: 113 TTCEVGTTWGRFNSGEVGLR----PVGYPGG-----GESGTTCGAATAGTGPGGRGKVAA 163
+ G + G G R P G PG GE G CG PG G
Sbjct: 1253 DIPDPGPPGDQGPPGPDGPRGAPGPPGLPGSVDLLRGEPG-DCGLPGPPGPPGPPGPPGY 1311
Query: 164 VGGPGTTWARGPRTSSPRAGP 184
G PG G + GP
Sbjct: 1312 KGFPGCDGKDGQKGPVGFPGP 1332
Score = 28.1 bits (61), Expect = 5.1
Identities = 45/158 (28%), Positives = 54/158 (34%), Gaps = 30/158 (18%)
Query: 37 CTATPVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLP 96
C P MG P P G+PG +GS + L GP A GLP
Sbjct: 492 CACEPGPMGPPG--------PPGLPGR--QGSKGDLGLPGWLGTKGDPGPPGAEGPPGLP 541
Query: 97 G-------PAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR-PVGYPGG-GESGTTCG 147
G P +G RV + + GE G P G+PG G G
Sbjct: 542 GKHGASGPPGNKGAKGDMVVSRV----------KGHKGERGPDGPPGFPGQPGSHGRDGH 591
Query: 148 AATAGT-GPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
A G GP G + A GG G GP + GP
Sbjct: 592 AGEKGDPGPPGDHEDATPGGKGFPGPLGPPGKAGPVGP 629
Score = 28.1 bits (61), Expect = 5.1
Identities = 30/102 (29%), Positives = 38/102 (37%), Gaps = 17/102 (16%)
Query: 92 FTGLPGPAAN-SCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAA 149
F GLPG GP + + G + N G+ G PG GE G+
Sbjct: 1043 FPGLPGDQGEPGSPGPPGFSGID----GARGPKGNKGDPASH-FGPPGPKGEPGS----- 1092
Query: 150 TAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
PG G A G G +GPR S R GP ++ P
Sbjct: 1093 -----PGCPGHFGASGEQGLPGIQGPRGSPGRPGPPGSSGPP 1129
>gi|4505531 oxysterol binding protein [Homo sapiens]
Length = 807
Score = 37.0 bits (84), Expect = 0.011
Identities = 34/93 (36%), Positives = 38/93 (40%), Gaps = 15/93 (16%)
Query: 96 PGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGE-SGTTCGAATAGTG 154
PGPAA + G G VG GR ++G PG G SGT AA G G
Sbjct: 12 PGPAAIAALGGGGAGPPV---VGGGGGRGDAG---------PGSGAASGTVVAAAAGGPG 59
Query: 155 PGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAA 187
PG G AA GP G S G G+A
Sbjct: 60 PGAGGVAAA--GPAPAPPTGGSGGSGAGGSGSA 90
Score = 28.9 bits (63), Expect = 3.0
Identities = 24/75 (32%), Positives = 27/75 (36%), Gaps = 14/75 (18%)
Query: 127 GEVGLRPVGYP--GGGESGTTCGAATAGTGPGGRGK--------VAAVGGPGT----TWA 172
G VG P GGG +G G G G G AA GGPG A
Sbjct: 8 GVVGPGPAAIAALGGGGAGPPVVGGGGGRGDAGPGSGAASGTVVAAAAGGPGPGAGGVAA 67
Query: 173 RGPRTSSPRAGPGAA 187
GP + P G G +
Sbjct: 68 AGPAPAPPTGGSGGS 82
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 36.6 bits (83), Expect = 0.014
Identities = 41/149 (27%), Positives = 54/149 (36%), Gaps = 35/149 (23%)
Query: 61 PGAVAEGSCRAVT---PTPELMRCTLAGPAAAATFTGLPGPAAN-SCRGPTAWGRVTTCE 116
PG+ G + + P E +AGP GLPGP + GP
Sbjct: 463 PGSEQIGFLKTINCSCPAGEKGEMGVAGPM------GLPGPKGDIGAIGP---------- 506
Query: 117 VGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGR----------GKVAAVGG 166
VG + G+VG+ P G GE G+ GP GR G++ G
Sbjct: 507 VGAPGPKGEKGDVGIGPFGQGEKGEKGSL-----GLPGPPGRDGSKGMRGEPGELGEPGL 561
Query: 167 PGTTWARGPRTSSPRAGPGAATWAPLVSG 195
PG RGP+ GP AP + G
Sbjct: 562 PGEVGMRGPQGPPGLPGPPGRVGAPGLQG 590
Score = 31.6 bits (70), Expect = 0.46
Identities = 44/148 (29%), Positives = 52/148 (35%), Gaps = 33/148 (22%)
Query: 44 MGLP----DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPA 99
+GLP D G P G PG G+ TP P + GP GLPG
Sbjct: 827 LGLPGLKGDRGEKGEAGPAGPPGL--PGTTSLFTPHPRMPG--EQGPKGEKGDPGLPGE- 881
Query: 100 ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR-PVGYPGGGESGTTCGAATAGTGPGGR 158
P GR GE+G + P G PG GA A PG
Sbjct: 882 ------PGLQGR--------------PGELGPQGPTGPPGAKGQEGAHGAPGAAGNPGAP 921
Query: 159 GKVAA---VGGPGTTWARGPRTSSPRAG 183
G V A G PG+ A G R + + G
Sbjct: 922 GHVGAPGPSGPPGSVGAPGLRGTPGKDG 949
Score = 31.6 bits (70), Expect = 0.46
Identities = 45/154 (29%), Positives = 53/154 (34%), Gaps = 38/154 (24%)
Query: 57 PMGVPGAVAEGSC--RAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTT 114
P G+PG E R P P G A GLPGP RGP + + T
Sbjct: 1232 PSGLPGIPGEEGKEGRDGKPGPP-------GEPGKAGEPGLPGP--EGARGPPGF-KGHT 1281
Query: 115 CEVGTTWGRFNSGEVGLR----------------------PVGYPG-GGESGTTCGAATA 151
+ G R SG +GL P G PG G G+ +
Sbjct: 1282 GDSGAPGPRGESGAMGLPGQEGLPGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPS 1341
Query: 152 GTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPG 185
GT PG +G G PG GPR P PG
Sbjct: 1342 GT-PGQKGSKGENGSPGLPGFLGPR--GPPGEPG 1372
Score = 30.8 bits (68), Expect = 0.79
Identities = 41/154 (26%), Positives = 49/154 (31%), Gaps = 32/154 (20%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCE 116
P+G PG E + P + G GLPGP R + R E
Sbjct: 506 PVGAPGPKGEKGDVGIGPFGQ-------GEKGEKGSLGLPGPPG---RDGSKGMRGEPGE 555
Query: 117 VGTTWGRFNSGEVGLR----PVGYPGG-------------GESGTTCGAATAGTG--PGG 157
+G GEVG+R P G PG GE GT G PG
Sbjct: 556 LGEPG---LPGEVGMRGPQGPPGLPGPPGRVGAPGLQGERGEKGTRGEKGERGLDGFPGK 612
Query: 158 RGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
G G PG + GP+ GP P
Sbjct: 613 PGDTGQQGRPGPSGVAGPQGEKGDVGPAGPPGVP 646
Score = 29.3 bits (64), Expect = 2.3
Identities = 40/164 (24%), Positives = 54/164 (32%), Gaps = 34/164 (20%)
Query: 35 PCCTATPVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTG 94
P +P + G P G+A P G PG R + P GP A G
Sbjct: 1030 PGIPGSPGSRGDPGIGVAGPPGPSGPPGDKGSPGSRGLPGFP--------GPQGPAGRDG 1081
Query: 95 LPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGL-----------RPVGYPG----G 139
PG RGP +++ + G++ L P G PG
Sbjct: 1082 APGNPGE--RGPPGKPGLSSL--------LSPGDINLLAKDVCNDCPPGPPGLPGLPGFK 1131
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAG 183
G+ G GT G +G+ G PG GP+ S G
Sbjct: 1132 GDKGVPGKPGREGT-EGKKGEAGPPGLPGPPGIAGPQGSQGERG 1174
Score = 28.5 bits (62), Expect = 3.9
Identities = 42/148 (28%), Positives = 49/148 (33%), Gaps = 12/148 (8%)
Query: 57 PMGVPGAVAEGSCRAVTPTP-------ELMRCTLAGPAAAATFTGLPG-PAANSCRGPTA 108
P G PG E R P E+ LAG GLPG P RG
Sbjct: 760 PPGPPGTKGEPGERGEDGLPGKPGLRGEIGEQGLAGRPGEKGEAGLPGAPGFPGVRGEKG 819
Query: 109 WGRVTTCEVGTTWGRFNSGEVG-LRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP 167
+ E+G + + GE G P G PG GTT PG +G G P
Sbjct: 820 -DQGEKGELGLPGLKGDRGEKGEAGPAGPPG--LPGTTSLFTPHPRMPGEQGPKGEKGDP 876
Query: 168 GTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G + GP T P G
Sbjct: 877 GLPGEPGLQGRPGELGPQGPTGPPGAKG 904
Score = 28.1 bits (61), Expect = 5.1
Identities = 24/65 (36%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 133 PVGYPG-GGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAP 191
P G PG GE G G PG GK G PG ARGP G A
Sbjct: 1232 PSGLPGIPGEEGKEGRDGKPGP-PGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPR 1290
Query: 192 LVSGA 196
SGA
Sbjct: 1291 GESGA 1295
Score = 27.7 bits (60), Expect = 6.7
Identities = 31/95 (32%), Positives = 34/95 (35%), Gaps = 17/95 (17%)
Query: 92 FTGLPGPAANSCR-GPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPG-GGESGTTCGAA 149
F G PG R GP+ G + G+VG P G PG G G
Sbjct: 609 FPGKPGDTGQQGRPGPS----------GVAGPQGEKGDVG--PAGPPGVPGSVVQQEGLK 656
Query: 150 TAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
PG RG G PG ARGP R GP
Sbjct: 657 GEQGAPGPRGHQ---GAPGPPGARGPIGPEGRDGP 688
>gi|21322252 androgen receptor isoform 1 [Homo sapiens]
Length = 920
Score = 36.2 bits (82), Expect = 0.019
Identities = 30/89 (33%), Positives = 37/89 (41%), Gaps = 17/89 (19%)
Query: 82 TLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGE 141
+L G AA +G P AA+S +W + T E G +G P G GGG
Sbjct: 413 SLHGAGAAGPGSGSPSAAASS-----SWHTLFTAEEGQLYG----------PCG--GGGG 455
Query: 142 SGTTCGAATAGTGPGGRGKVAAVGGPGTT 170
G G G G GG G+ AV G T
Sbjct: 456 GGGGGGGGGGGGGGGGGGEAGAVAPYGYT 484
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 36.2 bits (82), Expect = 0.019
Identities = 42/140 (30%), Positives = 46/140 (32%), Gaps = 12/140 (8%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-------PAANSCRGPTAWGR 111
G PG E + P LM GP A G PG P N +G R
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMGAR--GPPGPAGANGAPGLRGGAGEPGKNGAKGEPG-PR 446
Query: 112 VTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTW 171
E G GE G G PG + GAA PG RG G PG
Sbjct: 447 GERGEAGIPGVPGAKGEDGKD--GSPGEPGANGLPGAAGERGAPGFRGPAGPNGIPGEKG 504
Query: 172 ARGPRTSSPRAGPGAATWAP 191
G R + AGP A P
Sbjct: 505 PAGERGAPGPAGPRGAAGEP 524
Score = 35.0 bits (79), Expect = 0.042
Identities = 50/168 (29%), Positives = 56/168 (33%), Gaps = 44/168 (26%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAANSCRG----------PT 107
G PG E P M GP A G PG P A RG P
Sbjct: 279 GAPGLKGENGLPGENGAPGPM-----GPRGAPGERGRPGLPGAAGARGNDGARGSDGQPG 333
Query: 108 AWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-------GESGTTCGAATAGT------- 153
G T + G GEVG P G PG GE G A G
Sbjct: 334 PPGPPGTAGFPGSPGA--KGEVG--PAGSPGSNGAPGQRGEPGPQGHAGAQGPPGPPGIN 389
Query: 154 -GPGGRGKVAAVG---GPGTTWARGPRTSSPRAGPGAATWAPLVSGAS 197
PGG+G++ G PG ARGP GP A AP + G +
Sbjct: 390 GSPGGKGEMGPAGIPGAPGLMGARGP------PGPAGANGAPGLRGGA 431
Score = 33.9 bits (76), Expect = 0.093
Identities = 48/157 (30%), Positives = 51/157 (32%), Gaps = 24/157 (15%)
Query: 57 PMGVPGAVAEGSCRAVT----PTPELMRCTLAGPAAAATFTGLPG----PAANSCRG-PT 107
P G PG EG + P GP A F G PG P RG P
Sbjct: 772 PAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERGAPG 831
Query: 108 AWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG----GESGTTCGAATAGTGPGGRGKVAA 163
G V G G P G PG GE G+ G AG PG RG
Sbjct: 832 EKGEGGPPGVAGPPG-------GSGPAGPPGPQGVKGERGSPGGPGAAGF-PGARGLPGP 883
Query: 164 VGGPGTTWARGPRTSSPR---AGPGAATWAPLVSGAS 197
G G GP S + GP T AP G S
Sbjct: 884 PGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVS 920
Score = 33.9 bits (76), Expect = 0.093
Identities = 42/130 (32%), Positives = 51/130 (39%), Gaps = 24/130 (18%)
Query: 59 GVPGAVAE-GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAAN-SCRGPTAWGRVTTCE 116
G PGA G V P + +GPA A G PGPA + GP +
Sbjct: 1041 GAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPA---GAPGPAGSRGAPGPQG----PRGD 1093
Query: 117 VGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGP 175
G T R +G G R G+PG G G+ PG G+ A+G PG RGP
Sbjct: 1094 KGETGERGAAGIKGHR--GFPGNPGAPGS----------PGPAGQQGAIGSPGPAGPRGP 1141
Query: 176 RTSSPRAGPG 185
P PG
Sbjct: 1142 --VGPSGPPG 1149
Score = 33.1 bits (74), Expect = 0.16
Identities = 43/146 (29%), Positives = 56/146 (38%), Gaps = 23/146 (15%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATF---TGLPGPAANSCRGPTAWGRVT 113
P+G PG + + P L +AGP + TG PGPA P A G
Sbjct: 766 PIGPPGPAGQPGDKGEGGAPGLPG--IAGPRGSPGERGETGPPGPAGF----PGAPG--- 816
Query: 114 TCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT-GP-------GGRGKVAAVG 165
+ G G+ G G + G P G +G G+ AG GP G G A G
Sbjct: 817 --QNGEPGGKGERGAPGEKGEGGPPG-VAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAG 873
Query: 166 GPGTTWARGPRTSSPRAGPGAATWAP 191
PG GP S+ GP + +P
Sbjct: 874 FPGARGLPGPPGSNGNPGPPGPSGSP 899
Score = 32.3 bits (72), Expect = 0.27
Identities = 43/157 (27%), Positives = 51/157 (32%), Gaps = 28/157 (17%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVG 118
G PG+ E S R P P +GP G PGP N R G
Sbjct: 552 GPPGSQGE-SGRPGPPGP-------SGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG 603
Query: 119 TTWGRFNSGEVGLRPVGYPG----GGESGTTC--------GAATAGTGPGGRGKVAA--- 163
+GE G P G PG GG+ G T G G PG GK
Sbjct: 604 PQGPPGKNGETG--PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGP 661
Query: 164 ---VGGPGTTWARGPRTSSPRAGPGAATWAPLVSGAS 197
G PG +G + GP AP + G +
Sbjct: 662 KGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGA 698
Score = 32.3 bits (72), Expect = 0.27
Identities = 40/139 (28%), Positives = 53/139 (38%), Gaps = 12/139 (8%)
Query: 57 PMGVPGAVAEGSCRAVT--PTPELMRCT--LAGPAAAATFTGLPGPAANSCRGPTAWGRV 112
P G PG G + T P P+ ++ GP G PGP ++ G+
Sbjct: 616 PQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKG 675
Query: 113 TTCEVGTTWGRFNSGEVGLR----PVGYPGG-GESGTTCGAATAGTGPGGRGKVAAVGGP 167
G +G GLR P G GG G +G AGT PG +G GG
Sbjct: 676 DAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPPGPPGAAGT-PGLQGMPGERGGL 734
Query: 168 GTTWARGPRTSSPRAGPGA 186
G+ +G + GPGA
Sbjct: 735 GSPGPKGDK--GEPGGPGA 751
Score = 31.6 bits (70), Expect = 0.46
Identities = 40/115 (34%), Positives = 43/115 (37%), Gaps = 22/115 (19%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG----- 139
GP TG GP GPT G + G T G GL G P G
Sbjct: 606 GPPGKNGETGPQGPP-----GPTGPGG----DKGDTGPPGPQGLQGLPGTGGPPGENGKP 656
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGG---PGTTWARGPRTSS----PRAGPGAA 187
GE G G A A PGG+G A G PG A G R + P G GAA
Sbjct: 657 GEPGPK-GDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAA 710
Score = 30.8 bits (68), Expect = 0.79
Identities = 35/99 (35%), Positives = 39/99 (39%), Gaps = 18/99 (18%)
Query: 94 GLPGPA----ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLR-PVGYPG-GGESGTTCG 147
GLPG A A RGP + E G R G G R G PG G G
Sbjct: 477 GLPGAAGERGAPGFRGPAGPNGIPG-EKGPAGERGAPGPAGPRGAAGEPGRDGVPG---- 531
Query: 148 AATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAG-PG 185
GPG RG + GGPG+ GP S +G PG
Sbjct: 532 ------GPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPG 564
Score = 30.4 bits (67), Expect = 1.0
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 135 GYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWA 190
G PGG GE+G+ GA A PG G V G G GP + GP + A
Sbjct: 1026 GSPGGKGDRGENGSP-GAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGSRGA 1084
Query: 191 P 191
P
Sbjct: 1085 P 1085
Score = 29.3 bits (64), Expect = 2.3
Identities = 39/138 (28%), Positives = 47/138 (34%), Gaps = 11/138 (7%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAANSCRGPTA 108
G+ K P G GA R P R + G G PG P ++ GP
Sbjct: 498 GIPGEKGPAGERGAPGPAGPRGAAGEPG--RDGVPGGPGMRGMPGSPGGPGSDGKPGPPG 555
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP 167
+ E G SG G V G+PG + G GPGG G G P
Sbjct: 556 ----SQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPG---PQGPP 608
Query: 168 GTTWARGPRTSSPRAGPG 185
G GP+ GPG
Sbjct: 609 GKNGETGPQGPPGPTGPG 626
Score = 29.3 bits (64), Expect = 2.3
Identities = 43/158 (27%), Positives = 52/158 (32%), Gaps = 32/158 (20%)
Query: 38 TATPVTMGLP----DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFT 93
T P G P G K G PG EG V AGP +
Sbjct: 803 TGPPGPAGFPGAPGQNGEPGGKGERGAPGEKGEGGPPGV-----------AGPPGGSGPA 851
Query: 94 GLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATA 151
G PGP +G E G+ G +G G R + P G G G + +
Sbjct: 852 GPPGP--QGVKG----------ERGSPGGPGAAGFPGARGLPGPPGSNGNPGPPGPSGSP 899
Query: 152 GTG--PGGRGKVAAVGGPGTTWARGPRTSSPRAG-PGA 186
G PG G A G PG + +G G PGA
Sbjct: 900 GKDGPPGPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGA 937
Score = 29.3 bits (64), Expect = 2.3
Identities = 48/170 (28%), Positives = 57/170 (33%), Gaps = 29/170 (17%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAANSCRGPTA 108
G++ K G PG +GS A P +AG A G PG P GP
Sbjct: 918 GVSGPKGDAGQPGE--KGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMPGPRGSPGPQG 975
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLR-PVGYPG----GGESGTTCGAATAGT-----GPGGR 158
E G SGE G P G PG GE G + G PGG+
Sbjct: 976 ----VKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDGNPGSDGLPGRDGSPGGK 1031
Query: 159 GKVAAVGGPGTTWARG-PRTSSP-----------RAGPGAATWAPLVSGA 196
G G PG A G P P +GP AP +G+
Sbjct: 1032 GDRGENGSPGAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPAGS 1081
Score = 29.3 bits (64), Expect = 2.3
Identities = 42/142 (29%), Positives = 52/142 (36%), Gaps = 14/142 (9%)
Query: 48 DTGLARRKFPMGVPG-AVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAANSCRG 105
D G + P G PG A + G+ P + G A G PG P A G
Sbjct: 1063 DRGESGPAGPAGAPGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPG 1122
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT-GP-GGRGKVAA 163
P +G+ G VG P G PG + GT+ G GP G RG+ +
Sbjct: 1123 PAGQQGA----IGSPGPAGPRGPVG--PSGPPG--KDGTSGHPGPIGPPGPRGNRGERGS 1174
Query: 164 VGGPGTTWARGPRTSSPRAGPG 185
G PG GP P PG
Sbjct: 1175 EGSPGHPGQPGP--PGPPGAPG 1194
Score = 28.1 bits (61), Expect = 5.1
Identities = 41/144 (28%), Positives = 48/144 (33%), Gaps = 14/144 (9%)
Query: 67 GSCRAVTPTPELMRCTLA---GPAAAATFTGLPG-PAANSCRG-------PTAWGRVTTC 115
G C AV P P GP G PG P N G P + G C
Sbjct: 82 GECCAVCPQPPTAPTRPPNGQGPQGPKGDPGPPGIPGRNGDPGIPGQPGSPGSPGPPGIC 141
Query: 116 EVGTTWGRFNSGEVGLRPV--GYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR 173
E T + S + V G GG +G A G PG G G PG+ +
Sbjct: 142 ESCPTGPQNYSPQYDSYDVKSGVAVGGLAGYPGPAGPPGP-PGPPGTSGHPGSPGSPGYQ 200
Query: 174 GPRTSSPRAGPGAATWAPLVSGAS 197
GP +AGP P G S
Sbjct: 201 GPPGEPGQAGPSGPPGPPGAIGPS 224
Score = 28.1 bits (61), Expect = 5.1
Identities = 44/163 (26%), Positives = 54/163 (33%), Gaps = 25/163 (15%)
Query: 41 PVTMGLPDTGLARRKF-PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPA 99
P T G P + A+ + P G PG+ R GP A G PGP
Sbjct: 338 PGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEP-----------GPQGHAGAQGPPGPP 386
Query: 100 ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATAGTG--- 154
+ P G E+G G +G R P G G G GA G
Sbjct: 387 GIN-GSPGGKG-----EMGPAGIPGAPGLMGARGPPGPAGANGAPGLRGGAGEPGKNGAK 440
Query: 155 --PGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
PG RG+ G PG A+G G A P +G
Sbjct: 441 GEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAG 483
>gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 35.8 bits (81), Expect = 0.024
Identities = 23/59 (38%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 131 LRPVGYPGGGESGTTCGAATA-GTGPGGRGKVAA---VGGPGTTWARGPRTSSPRAGPG 185
L P G G C + A G G GG GKV VGG G WA+ P + S G G
Sbjct: 59 LCPEGEKGSPPPPALCSSPKASGEGVGGEGKVTGECLVGGRGAGWAQTPHSHSAGCGAG 117
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 35.8 bits (81), Expect = 0.024
Identities = 43/147 (29%), Positives = 51/147 (34%), Gaps = 21/147 (14%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAW-GRVTTC 115
P G+PG P P+ L G A F GLPG + RGP W G C
Sbjct: 436 PPGLPGP----------PGPDGFLFGLKGAKGRAGFPGLPG--SPGARGPKGWKGDAGEC 483
Query: 116 EVGTTWGRFNSGEVGLR-PVGYPG-GGESGTTCGAATAGTG-----PGGRGKVAAVGGPG 168
T G GL P G+ G GE G G PG +G +G PG
Sbjct: 484 RC-TEGDEAIKGLPGLPGPKGFAGINGEPGRKGDRGDPGQHGLPGFPGLKGVPGNIGAPG 542
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
A+G + G P V G
Sbjct: 543 PKGAKGDSRTITTKGERGQPGVPGVPG 569
Score = 30.0 bits (66), Expect = 1.3
Identities = 25/78 (32%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
Query: 92 FTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPG-GGESGTTCGAAT 150
F GLPGP + +GP G + GE+G +G PG G+ G A
Sbjct: 585 FPGLPGPPGDGIKGPPG----DPGYPGIPGTKGTPGEMGPPGLGLPGLKGQRGFPGDAGL 640
Query: 151 AGTGPGGRGKVAAVGGPG 168
G PG G G PG
Sbjct: 641 PGP-PGFLGPPGPAGTPG 657
Score = 30.0 bits (66), Expect = 1.3
Identities = 50/165 (30%), Positives = 53/165 (32%), Gaps = 35/165 (21%)
Query: 34 LPCCTATPVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFT 93
+P TP MG P GL K G PG L GP F
Sbjct: 608 IPGTKGTPGEMGPPGLGLPGLKGQRGFPGDAG-----------------LPGPPG---FL 647
Query: 94 GLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPG-GGESGTT------- 145
G PGPA + V G G +G P G PG G G T
Sbjct: 648 GPPGPAGTPGQIDCDTD-VKRAVGGDRQEAIQPGCIG-GPKGLPGLPGPPGPTGAKGLRG 705
Query: 146 -CGAATAGTGPGGR---GKVAAVGGPGTTWARGPRTSSPRAG-PG 185
G A A GPG R G G PG GPR S G PG
Sbjct: 706 IPGFAGADGGPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPG 750
Score = 30.0 bits (66), Expect = 1.3
Identities = 47/148 (31%), Positives = 53/148 (35%), Gaps = 13/148 (8%)
Query: 35 PCCTATPVTMGLP-DTGLARRKFPMGVPGAVA----EGSCRAVTPTPELMRCTLAGPAAA 89
P TP T G D+G R G+PG +G PT + GP
Sbjct: 1316 PGAPGTPGTKGWAGDSGPQGRPGVFGLPGEKGPRGEQGFMGNTGPTGAVGDRGPKGPKGD 1375
Query: 90 ATFTGLPGPA-ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVG-LRPVGYPGGGESGTTCG 147
F G PG A G V VG R G G + P G PG E G
Sbjct: 1376 PGFPGAPGTVGAPGIAGIPQKIAVQPGTVGPQGRRGPPGAPGEMGPQGPPG--EPGFR-- 1431
Query: 148 AATAGTGPGGRGKVAAVGGPGTTWARGP 175
A GP GRG V+AV PG GP
Sbjct: 1432 GAPGKAGPQGRGGVSAV--PGFRGDEGP 1457
Score = 28.1 bits (61), Expect = 5.1
Identities = 40/152 (26%), Positives = 51/152 (33%), Gaps = 41/152 (26%)
Query: 35 PCCTATPVTMGLP-DTGLARRKFPMGVPG-AVAEGSCRAVTPTPELMRCTLAGPAAAATF 92
P P + G P D GL G PG ++ +G R P + + P A +
Sbjct: 368 PGAQGEPGSQGEPGDPGLP------GPPGLSIGDGDQRRGLPGEMGPKGFIGDPGIPALY 421
Query: 93 TGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGTTCGAATA 151
G PGP RGP P G PG G G G
Sbjct: 422 GGPPGPDGK--RGPPG------------------------PPGLPGPPGPDGFLFGLK-- 453
Query: 152 GTGPGGRGKVAAVGGPGTTWARGPRTSSPRAG 183
G +G+ G PG+ ARGP+ AG
Sbjct: 454 ----GAKGRAGFPGLPGSPGARGPKGWKGDAG 481
Score = 28.1 bits (61), Expect = 5.1
Identities = 34/109 (31%), Positives = 38/109 (34%), Gaps = 19/109 (17%)
Query: 85 GPAAAATFTGLPGPA-ANSCRGPTAWGRVTTCE-----VGTTWGRFNSGEVGLR------ 132
GP A G+PG A A+ GP E G R + G VGL
Sbjct: 696 GPTGAKGLRGIPGFAGADGGPGPRGLPGDAGREGFPGPPGFIGPRGSKGAVGLPGPDGSP 755
Query: 133 -PVGYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPR 176
P+G PG GE G G PG RG G PG G R
Sbjct: 756 GPIGLPGPDGPPGERGLP--GEVLGAQPGPRGDAGVPGQPGLKGLPGDR 802
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 35.8 bits (81), Expect = 0.024
Identities = 23/52 (44%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 151 AGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP-------GAATWAPLVSG 195
AGTGPGG + A+ GPG GPR P GP GAA W P G
Sbjct: 73 AGTGPGGEARARALLGPGAL-GLGPR-PPPGPGPPFALGCGGAARWYPRAHG 122
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.4 bits (80), Expect = 0.032
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 50 GLARRKFPMGVPGAVAE-GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTA 108
GL R P G PG E G+ P R + GP GLPGPA +
Sbjct: 1084 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV------GLPGPAGPAGSPGED 1137
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
+ E G + + GE G P G PG G A PG RG+ G G
Sbjct: 1138 GDKGEIGEPGQKGSKGDKGENG--PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG 1195
Query: 169 TTWARG 174
ARG
Sbjct: 1196 DEGARG 1201
Score = 32.7 bits (73), Expect = 0.21
Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRG-PTAWGRVTTCEV 117
G+PGA + + P P+ ++G A G PG RG P A G
Sbjct: 1009 GLPGAAGKEGAKG-DPGPQ----GISGKDGPAGLRGFPGE-----RGLPGAQGAP----- 1053
Query: 118 GTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRT 177
G G G G PVG PG S T G PG +G G G +GP+
Sbjct: 1054 GLKGGEGPQGPPG--PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1111
Query: 178 SSPRAG 183
+ R G
Sbjct: 1112 PAGRDG 1117
Score = 32.7 bits (73), Expect = 0.21
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 126 SGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
SGE G P G PG GA G +G+ A G PG T GP+ + + GP
Sbjct: 1362 SGEAG--PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1418
Score = 32.0 bits (71), Expect = 0.35
Identities = 49/168 (29%), Positives = 55/168 (32%), Gaps = 37/168 (22%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAAN----SCRG 105
G K G P V G P P AGPA GL GP RG
Sbjct: 432 GAYGEKGQKGEPAVVEPGMLVEGPPGP-------AGPAGIMGPPGLQGPTGPPGDPGDRG 484
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT------------ 153
P GR G G + + P Y G G G T A A
Sbjct: 485 PP--GRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR 540
Query: 154 GPGG----RGKVAAVGGPGTTWARG----PRTSSPRA--GPGAATWAP 191
GP G G+ VGGPG++ A+G P PR GP T P
Sbjct: 541 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP 588
Score = 31.6 bits (70), Expect = 0.46
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPT 107
+TG + P G G V PT E GP G PGP
Sbjct: 965 ETGFQGKTGPPGPGGVVGPQG-----PTGE------TGPIGERGHPGPPGPPGEQGLPGA 1013
Query: 108 AWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP 167
A + G G GLR G+PG G A PG +G G P
Sbjct: 1014 AGKEGAKGDPGPQGISGKDGPAGLR--GFPGER------GLPGAQGAPGLKGGEGPQGPP 1065
Query: 168 GTTWARGPRTSSPRAGP 184
G + G R S+ AGP
Sbjct: 1066 GPVGSPGERGSAGTAGP 1082
Score = 31.2 bits (69), Expect = 0.60
Identities = 44/145 (30%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PA 99
P G P GL + P G PG V R T AGP GLPG P
Sbjct: 1047 PGAQGAP--GLKGGEGPQGPPGPVGSPGERGSAGT--------AGPI------GLPGRPG 1090
Query: 100 ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRG 159
GP A + E G G G PVG PG A AG+ PG G
Sbjct: 1091 PQGPPGP-AGEKGAPGEKGPQGPAGRDGVQG--PVGLPGP--------AGPAGS-PGEDG 1138
Query: 160 KVAAVGGPGTTWARGPRTSSPRAGP 184
+G PG ++G + + GP
Sbjct: 1139 DKGEIGEPGQKGSKGDKGENGPPGP 1163
Score = 30.4 bits (67), Expect = 1.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 116 EVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR 173
++G R G++G R P G G +G T +G G +GK+ G PG +
Sbjct: 803 DMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQA-GEKGKLGVPGLPGYPGRQ 861
Query: 174 GPRTSSPRAG-PGA 186
GP+ S+ G PGA
Sbjct: 862 GPKGSTGFPGFPGA 875
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/147 (28%), Positives = 47/147 (31%), Gaps = 23/147 (15%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCE 116
P G+PG TP G A G PGP N GP E
Sbjct: 653 PRGLPGEAGPRGLLGPRGTPGA-----PGQPGMAGVDGPPGPKGNM--GPQG-------E 698
Query: 117 VGTTWGRFNSGEVGLR----PVGYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPG 168
G + N G GL P+G PG G+ G G A PG GK G G
Sbjct: 699 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA-GLPGADGPPGHPGKEGQSGEKG 757
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
GP+ GP A V G
Sbjct: 758 ALGPPGPQGPIGYPGPRGVKGADGVRG 784
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 34/137 (24%)
Query: 56 FPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTC 115
FP G PGA E R V P GP TG G + RGPT
Sbjct: 869 FP-GFPGANGEKGARGVAGKP--------GPRGQRGPTGPRG--SRGARGPTG----KPG 913
Query: 116 EVGTTWGRFNSGEVGLR-------PVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
GT+ G G G R PVG+PG PG GK G PG
Sbjct: 914 PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGP------------PGPPGKDGLPGHPG 961
Query: 169 TTWARGPRTSSPRAGPG 185
G + + GPG
Sbjct: 962 QRGETGFQGKTGPPGPG 978
Score = 29.3 bits (64), Expect = 2.3
Identities = 47/152 (30%), Positives = 56/152 (36%), Gaps = 22/152 (14%)
Query: 44 MGLP-DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAAN 101
MGL D G + P G G EG PT + AG GLPG P
Sbjct: 804 MGLKGDRGEVGQIGPRGEDGP--EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQ 861
Query: 102 SCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAG----TG- 154
+G T + +GE G R V G PG G+ G T + G TG
Sbjct: 862 GPKGSTGFPGFPGA----------NGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 911
Query: 155 PGGRGKVAAVGGPGTTWARGPR-TSSPRAGPG 185
PG +G G PG RGP+ P PG
Sbjct: 912 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPG 943
Score = 29.3 bits (64), Expect = 2.3
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSC----RG 105
G A + P G G V A P PE +R + GP GLPG A G
Sbjct: 1393 GEAGAEGPPGKTGPVGPQG-PAGKPGPEGLR-GIPGPVGEQ---GLPGAAGQDGPPGPMG 1447
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGT--------TCGAATAGTGPG 156
P + + G+ + + G +GL +G PG GE G + GA G PG
Sbjct: 1448 PPGLPGLKG-DPGSKGEKGHPGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG 1504
Query: 157 GRGKVAAVGGPGTTWARGPRTSSPRAGP 184
G + G PG +GP+ + GP
Sbjct: 1505 PAGPLGPPGPPGLPGPQGPKGNKGSTGP 1532
Score = 28.9 bits (63), Expect = 3.0
Identities = 50/155 (32%), Positives = 59/155 (38%), Gaps = 26/155 (16%)
Query: 50 GLARRKFPMGVPGAV-AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCR 104
GL R P+G PG+ A+G + P P+ R P TG PG P A+ R
Sbjct: 547 GLTGRPGPVGGPGSSGAKGE--SGDPGPQGPRGVQGPPGP----TGKPGKRGRPGADGGR 600
Query: 105 G----PTAWG-RVTTCEVGTTWGRFNSGEVGLR-PVGYPGG----GESGTTCGAATAG-T 153
G P A G R G + + GE G + P G PG GE G G
Sbjct: 601 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEA 660
Query: 154 GPGG----RGKVAAVGGPGTTWARGPRTSSPRAGP 184
GP G RG A G PG GP GP
Sbjct: 661 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 695
Score = 28.5 bits (62), Expect = 3.9
Identities = 33/111 (29%), Positives = 37/111 (33%), Gaps = 28/111 (25%)
Query: 84 AGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG---- 139
AGP AA G GP + GP N G PVG+PG
Sbjct: 1296 AGPPGAAGPPGAKGPPGDD--GPKG----------------NPG-----PVGFPGDPGPP 1332
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWA 190
GE G G G G G G PG + GP + GP A A
Sbjct: 1333 GEPGPA-GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1382
Score = 28.1 bits (61), Expect = 5.1
Identities = 30/111 (27%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGT 144
GP GLPGP G + +G G P G PG G+
Sbjct: 1204 GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG--PQGPPGS--VGS 1259
Query: 145 TCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G PG G G G +G R AGP A P G
Sbjct: 1260 VGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1309
Score = 27.3 bits (59), Expect = 8.7
Identities = 30/100 (30%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 94 GLPGPAA----NSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAA 149
G PGP N GP VG+ G GE G G PG G A
Sbjct: 1234 GPPGPRGPQGPNGADGPQG----PPGSVGSVGGVGEKGEPG--EAGNPGPP------GEA 1281
Query: 150 TAGTGPGGRGKVAAVGGPGTTWARG----PRTSSPRAGPG 185
G G RG+ G PG G P P+ PG
Sbjct: 1282 GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1321
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.4 bits (80), Expect = 0.032
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 50 GLARRKFPMGVPGAVAE-GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTA 108
GL R P G PG E G+ P R + GP GLPGPA +
Sbjct: 1033 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV------GLPGPAGPAGSPGED 1086
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
+ E G + + GE G P G PG G A PG RG+ G G
Sbjct: 1087 GDKGEIGEPGQKGSKGDKGENG--PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG 1144
Query: 169 TTWARG 174
ARG
Sbjct: 1145 DEGARG 1150
Score = 32.7 bits (73), Expect = 0.21
Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRG-PTAWGRVTTCEV 117
G+PGA + + P P+ ++G A G PG RG P A G
Sbjct: 958 GLPGAAGKEGAKG-DPGPQ----GISGKDGPAGLRGFPGE-----RGLPGAQGAP----- 1002
Query: 118 GTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRT 177
G G G G PVG PG S T G PG +G G G +GP+
Sbjct: 1003 GLKGGEGPQGPPG--PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1060
Query: 178 SSPRAG 183
+ R G
Sbjct: 1061 PAGRDG 1066
Score = 32.7 bits (73), Expect = 0.21
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 126 SGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
SGE G P G PG GA G +G+ A G PG T GP+ + + GP
Sbjct: 1311 SGEAG--PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1367
Score = 32.0 bits (71), Expect = 0.35
Identities = 49/168 (29%), Positives = 55/168 (32%), Gaps = 37/168 (22%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAAN----SCRG 105
G K G P V G P P AGPA GL GP RG
Sbjct: 381 GAYGEKGQKGEPAVVEPGMLVEGPPGP-------AGPAGIMGPPGLQGPTGPPGDPGDRG 433
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT------------ 153
P GR G G + + P Y G G G T A A
Sbjct: 434 PP--GRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR 489
Query: 154 GPGG----RGKVAAVGGPGTTWARG----PRTSSPRA--GPGAATWAP 191
GP G G+ VGGPG++ A+G P PR GP T P
Sbjct: 490 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP 537
Score = 31.6 bits (70), Expect = 0.46
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPT 107
+TG + P G G V PT E GP G PGP
Sbjct: 914 ETGFQGKTGPPGPGGVVGPQG-----PTGE------TGPIGERGHPGPPGPPGEQGLPGA 962
Query: 108 AWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP 167
A + G G GLR G+PG G A PG +G G P
Sbjct: 963 AGKEGAKGDPGPQGISGKDGPAGLR--GFPGER------GLPGAQGAPGLKGGEGPQGPP 1014
Query: 168 GTTWARGPRTSSPRAGP 184
G + G R S+ AGP
Sbjct: 1015 GPVGSPGERGSAGTAGP 1031
Score = 31.2 bits (69), Expect = 0.60
Identities = 44/145 (30%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PA 99
P G P GL + P G PG V R T AGP GLPG P
Sbjct: 996 PGAQGAP--GLKGGEGPQGPPGPVGSPGERGSAGT--------AGPI------GLPGRPG 1039
Query: 100 ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRG 159
GP A + E G G G PVG PG A AG+ PG G
Sbjct: 1040 PQGPPGP-AGEKGAPGEKGPQGPAGRDGVQG--PVGLPGP--------AGPAGS-PGEDG 1087
Query: 160 KVAAVGGPGTTWARGPRTSSPRAGP 184
+G PG ++G + + GP
Sbjct: 1088 DKGEIGEPGQKGSKGDKGENGPPGP 1112
Score = 30.4 bits (67), Expect = 1.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 116 EVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR 173
++G R G++G R P G G +G T +G G +GK+ G PG +
Sbjct: 752 DMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQA-GEKGKLGVPGLPGYPGRQ 810
Query: 174 GPRTSSPRAG-PGA 186
GP+ S+ G PGA
Sbjct: 811 GPKGSTGFPGFPGA 824
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/147 (28%), Positives = 47/147 (31%), Gaps = 23/147 (15%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCE 116
P G+PG TP G A G PGP N GP E
Sbjct: 602 PRGLPGEAGPRGLLGPRGTPGA-----PGQPGMAGVDGPPGPKGNM--GPQG-------E 647
Query: 117 VGTTWGRFNSGEVGLR----PVGYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPG 168
G + N G GL P+G PG G+ G G A PG GK G G
Sbjct: 648 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA-GLPGADGPPGHPGKEGQSGEKG 706
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
GP+ GP A V G
Sbjct: 707 ALGPPGPQGPIGYPGPRGVKGADGVRG 733
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 34/137 (24%)
Query: 56 FPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTC 115
FP G PGA E R V P GP TG G + RGPT
Sbjct: 818 FP-GFPGANGEKGARGVAGKP--------GPRGQRGPTGPRG--SRGARGPTG----KPG 862
Query: 116 EVGTTWGRFNSGEVGLR-------PVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
GT+ G G G R PVG+PG PG GK G PG
Sbjct: 863 PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGP------------PGPPGKDGLPGHPG 910
Query: 169 TTWARGPRTSSPRAGPG 185
G + + GPG
Sbjct: 911 QRGETGFQGKTGPPGPG 927
Score = 29.3 bits (64), Expect = 2.3
Identities = 47/152 (30%), Positives = 56/152 (36%), Gaps = 22/152 (14%)
Query: 44 MGLP-DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAAN 101
MGL D G + P G G EG PT + AG GLPG P
Sbjct: 753 MGLKGDRGEVGQIGPRGEDGP--EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQ 810
Query: 102 SCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAG----TG- 154
+G T + +GE G R V G PG G+ G T + G TG
Sbjct: 811 GPKGSTGFPGFPGA----------NGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 860
Query: 155 PGGRGKVAAVGGPGTTWARGPR-TSSPRAGPG 185
PG +G G PG RGP+ P PG
Sbjct: 861 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPG 892
Score = 29.3 bits (64), Expect = 2.3
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSC----RG 105
G A + P G G V A P PE +R + GP GLPG A G
Sbjct: 1342 GEAGAEGPPGKTGPVGPQG-PAGKPGPEGLR-GIPGPVGEQ---GLPGAAGQDGPPGPMG 1396
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGT--------TCGAATAGTGPG 156
P + + G+ + + G +GL +G PG GE G + GA G PG
Sbjct: 1397 PPGLPGLKG-DPGSKGEKGHPGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG 1453
Query: 157 GRGKVAAVGGPGTTWARGPRTSSPRAGP 184
G + G PG +GP+ + GP
Sbjct: 1454 PAGPLGPPGPPGLPGPQGPKGNKGSTGP 1481
Score = 28.9 bits (63), Expect = 3.0
Identities = 50/155 (32%), Positives = 59/155 (38%), Gaps = 26/155 (16%)
Query: 50 GLARRKFPMGVPGAV-AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCR 104
GL R P+G PG+ A+G + P P+ R P TG PG P A+ R
Sbjct: 496 GLTGRPGPVGGPGSSGAKGE--SGDPGPQGPRGVQGPPGP----TGKPGKRGRPGADGGR 549
Query: 105 G----PTAWG-RVTTCEVGTTWGRFNSGEVGLR-PVGYPGG----GESGTTCGAATAG-T 153
G P A G R G + + GE G + P G PG GE G G
Sbjct: 550 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEA 609
Query: 154 GPGG----RGKVAAVGGPGTTWARGPRTSSPRAGP 184
GP G RG A G PG GP GP
Sbjct: 610 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 644
Score = 28.5 bits (62), Expect = 3.9
Identities = 33/111 (29%), Positives = 37/111 (33%), Gaps = 28/111 (25%)
Query: 84 AGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG---- 139
AGP AA G GP + GP N G PVG+PG
Sbjct: 1245 AGPPGAAGPPGAKGPPGDD--GPKG----------------NPG-----PVGFPGDPGPP 1281
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWA 190
GE G G G G G G PG + GP + GP A A
Sbjct: 1282 GEPGPA-GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1331
Score = 28.1 bits (61), Expect = 5.1
Identities = 30/111 (27%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGT 144
GP GLPGP G + +G G P G PG G+
Sbjct: 1153 GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG--PQGPPGS--VGS 1208
Query: 145 TCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G PG G G G +G R AGP A P G
Sbjct: 1209 VGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1258
Score = 27.3 bits (59), Expect = 8.7
Identities = 30/100 (30%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 94 GLPGPAA----NSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAA 149
G PGP N GP VG+ G GE G G PG G A
Sbjct: 1183 GPPGPRGPQGPNGADGPQG----PPGSVGSVGGVGEKGEPG--EAGNPGPP------GEA 1230
Query: 150 TAGTGPGGRGKVAAVGGPGTTWARG----PRTSSPRAGPG 185
G G RG+ G PG G P P+ PG
Sbjct: 1231 GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1270
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.4 bits (80), Expect = 0.032
Identities = 39/126 (30%), Positives = 46/126 (36%), Gaps = 9/126 (7%)
Query: 50 GLARRKFPMGVPGAVAE-GSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTA 108
GL R P G PG E G+ P R + GP GLPGPA +
Sbjct: 1072 GLPGRPGPQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPV------GLPGPAGPAGSPGED 1125
Query: 109 WGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
+ E G + + GE G P G PG G A PG RG+ G G
Sbjct: 1126 GDKGEIGEPGQKGSKGDKGENG--PPGPPGLQGPVGAPGIAGGDGEPGPRGQQGMFGQKG 1183
Query: 169 TTWARG 174
ARG
Sbjct: 1184 DEGARG 1189
Score = 32.7 bits (73), Expect = 0.21
Identities = 37/126 (29%), Positives = 47/126 (37%), Gaps = 18/126 (14%)
Query: 59 GVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRG-PTAWGRVTTCEV 117
G+PGA + + P P+ ++G A G PG RG P A G
Sbjct: 997 GLPGAAGKEGAKG-DPGPQ----GISGKDGPAGLRGFPGE-----RGLPGAQGAP----- 1041
Query: 118 GTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRT 177
G G G G PVG PG S T G PG +G G G +GP+
Sbjct: 1042 GLKGGEGPQGPPG--PVGSPGERGSAGTAGPIGLPGRPGPQGPPGPAGEKGAPGEKGPQG 1099
Query: 178 SSPRAG 183
+ R G
Sbjct: 1100 PAGRDG 1105
Score = 32.7 bits (73), Expect = 0.21
Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Query: 126 SGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGP 184
SGE G P G PG GA G +G+ A G PG T GP+ + + GP
Sbjct: 1350 SGEAG--PPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPGKTGPVGPQGPAGKPGP 1406
Score = 32.0 bits (71), Expect = 0.35
Identities = 49/168 (29%), Positives = 55/168 (32%), Gaps = 37/168 (22%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAAN----SCRG 105
G K G P V G P P AGPA GL GP RG
Sbjct: 420 GAYGEKGQKGEPAVVEPGMLVEGPPGP-------AGPAGIMGPPGLQGPTGPPGDPGDRG 472
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGT------------ 153
P GR G G + + P Y G G G T A A
Sbjct: 473 PP--GRPGLPGADGLPGP--PGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALR 528
Query: 154 GPGG----RGKVAAVGGPGTTWARG----PRTSSPRA--GPGAATWAP 191
GP G G+ VGGPG++ A+G P PR GP T P
Sbjct: 529 GPPGPMGLTGRPGPVGGPGSSGAKGESGDPGPQGPRGVQGPPGPTGKP 576
Score = 31.6 bits (70), Expect = 0.46
Identities = 38/137 (27%), Positives = 45/137 (32%), Gaps = 19/137 (13%)
Query: 48 DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPT 107
+TG + P G G V PT E GP G PGP
Sbjct: 953 ETGFQGKTGPPGPGGVVGPQG-----PTGE------TGPIGERGHPGPPGPPGEQGLPGA 1001
Query: 108 AWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGP 167
A + G G GLR G+PG G A PG +G G P
Sbjct: 1002 AGKEGAKGDPGPQGISGKDGPAGLR--GFPGER------GLPGAQGAPGLKGGEGPQGPP 1053
Query: 168 GTTWARGPRTSSPRAGP 184
G + G R S+ AGP
Sbjct: 1054 GPVGSPGERGSAGTAGP 1070
Score = 31.2 bits (69), Expect = 0.60
Identities = 44/145 (30%), Positives = 52/145 (35%), Gaps = 29/145 (20%)
Query: 41 PVTMGLPDTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PA 99
P G P GL + P G PG V R T AGP GLPG P
Sbjct: 1035 PGAQGAP--GLKGGEGPQGPPGPVGSPGERGSAGT--------AGPI------GLPGRPG 1078
Query: 100 ANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAATAGTGPGGRG 159
GP A + E G G G PVG PG A AG+ PG G
Sbjct: 1079 PQGPPGP-AGEKGAPGEKGPQGPAGRDGVQG--PVGLPGP--------AGPAGS-PGEDG 1126
Query: 160 KVAAVGGPGTTWARGPRTSSPRAGP 184
+G PG ++G + + GP
Sbjct: 1127 DKGEIGEPGQKGSKGDKGENGPPGP 1151
Score = 30.4 bits (67), Expect = 1.0
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 116 EVGTTWGRFNSGEVGLRPVGYPGG--GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWAR 173
++G R G++G R P G G +G T +G G +GK+ G PG +
Sbjct: 791 DMGLKGDRGEVGQIGPRGEDGPEGPKGRAGPTGDPGPSGQA-GEKGKLGVPGLPGYPGRQ 849
Query: 174 GPRTSSPRAG-PGA 186
GP+ S+ G PGA
Sbjct: 850 GPKGSTGFPGFPGA 863
Score = 30.0 bits (66), Expect = 1.3
Identities = 42/147 (28%), Positives = 47/147 (31%), Gaps = 23/147 (15%)
Query: 57 PMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTCE 116
P G+PG TP G A G PGP N GP E
Sbjct: 641 PRGLPGEAGPRGLLGPRGTPGA-----PGQPGMAGVDGPPGPKGNM--GPQG-------E 686
Query: 117 VGTTWGRFNSGEVGLR----PVGYPGG----GESGTTCGAATAGTGPGGRGKVAAVGGPG 168
G + N G GL P+G PG G+ G G A PG GK G G
Sbjct: 687 PGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA-GLPGADGPPGHPGKEGQSGEKG 745
Query: 169 TTWARGPRTSSPRAGPGAATWAPLVSG 195
GP+ GP A V G
Sbjct: 746 ALGPPGPQGPIGYPGPRGVKGADGVRG 772
Score = 30.0 bits (66), Expect = 1.3
Identities = 41/137 (29%), Positives = 46/137 (33%), Gaps = 34/137 (24%)
Query: 56 FPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSCRGPTAWGRVTTC 115
FP G PGA E R V P GP TG G + RGPT
Sbjct: 857 FP-GFPGANGEKGARGVAGKP--------GPRGQRGPTGPRG--SRGARGPTG----KPG 901
Query: 116 EVGTTWGRFNSGEVGLR-------PVGYPGGGESGTTCGAATAGTGPGGRGKVAAVGGPG 168
GT+ G G G R PVG+PG PG GK G PG
Sbjct: 902 PKGTSGGDGPPGPPGERGPQGPQGPVGFPGPKGP------------PGPPGKDGLPGHPG 949
Query: 169 TTWARGPRTSSPRAGPG 185
G + + GPG
Sbjct: 950 QRGETGFQGKTGPPGPG 966
Score = 29.3 bits (64), Expect = 2.3
Identities = 47/152 (30%), Positives = 56/152 (36%), Gaps = 22/152 (14%)
Query: 44 MGLP-DTGLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG-PAAN 101
MGL D G + P G G EG PT + AG GLPG P
Sbjct: 792 MGLKGDRGEVGQIGPRGEDGP--EGPKGRAGPTGDPGPSGQAGEKGKLGVPGLPGYPGRQ 849
Query: 102 SCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPV-GYPGG-GESGTTCGAATAG----TG- 154
+G T + +GE G R V G PG G+ G T + G TG
Sbjct: 850 GPKGSTGFPGFPGA----------NGEKGARGVAGKPGPRGQRGPTGPRGSRGARGPTGK 899
Query: 155 PGGRGKVAAVGGPGTTWARGPR-TSSPRAGPG 185
PG +G G PG RGP+ P PG
Sbjct: 900 PGPKGTSGGDGPPGPPGERGPQGPQGPVGFPG 931
Score = 29.3 bits (64), Expect = 2.3
Identities = 43/148 (29%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 50 GLARRKFPMGVPGAVAEGSCRAVTPTPELMRCTLAGPAAAATFTGLPGPAANSC----RG 105
G A + P G G V A P PE +R + GP GLPG A G
Sbjct: 1381 GEAGAEGPPGKTGPVGPQG-PAGKPGPEGLR-GIPGPVGEQ---GLPGAAGQDGPPGPMG 1435
Query: 106 PTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG-GESGT--------TCGAATAGTGPG 156
P + + G+ + + G +GL +G PG GE G + GA G PG
Sbjct: 1436 PPGLPGLKG-DPGSKGEKGHPGLIGL--IGPPGEQGEKGDRGLPGTQGSPGAKGDGGIPG 1492
Query: 157 GRGKVAAVGGPGTTWARGPRTSSPRAGP 184
G + G PG +GP+ + GP
Sbjct: 1493 PAGPLGPPGPPGLPGPQGPKGNKGSTGP 1520
Score = 28.9 bits (63), Expect = 3.0
Identities = 50/155 (32%), Positives = 59/155 (38%), Gaps = 26/155 (16%)
Query: 50 GLARRKFPMGVPGAV-AEGSCRAVTPTPELMRCTLAGPAAAATFTGLPG----PAANSCR 104
GL R P+G PG+ A+G + P P+ R P TG PG P A+ R
Sbjct: 535 GLTGRPGPVGGPGSSGAKGE--SGDPGPQGPRGVQGPPGP----TGKPGKRGRPGADGGR 588
Query: 105 G----PTAWG-RVTTCEVGTTWGRFNSGEVGLR-PVGYPGG----GESGTTCGAATAG-T 153
G P A G R G + + GE G + P G PG GE G G
Sbjct: 589 GMPGEPGAKGDRGFDGLPGLPGDKGHRGERGPQGPPGPPGDDGMRGEDGEIGPRGLPGEA 648
Query: 154 GPGG----RGKVAAVGGPGTTWARGPRTSSPRAGP 184
GP G RG A G PG GP GP
Sbjct: 649 GPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGP 683
Score = 28.5 bits (62), Expect = 3.9
Identities = 33/111 (29%), Positives = 37/111 (33%), Gaps = 28/111 (25%)
Query: 84 AGPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGG---- 139
AGP AA G GP + GP N G PVG+PG
Sbjct: 1284 AGPPGAAGPPGAKGPPGDD--GPKG----------------NPG-----PVGFPGDPGPP 1320
Query: 140 GESGTTCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWA 190
GE G G G G G G PG + GP + GP A A
Sbjct: 1321 GEPGPA-GQDGVGGDKGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGA 1370
Score = 28.1 bits (61), Expect = 5.1
Identities = 30/111 (27%), Positives = 34/111 (30%), Gaps = 5/111 (4%)
Query: 85 GPAAAATFTGLPGPAANSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGT 144
GP GLPGP G + +G G P G PG G+
Sbjct: 1192 GPPGPIGLQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADG--PQGPPGS--VGS 1247
Query: 145 TCGAATAGTGPGGRGKVAAVGGPGTTWARGPRTSSPRAGPGAATWAPLVSG 195
G G PG G G G +G R AGP A P G
Sbjct: 1248 VGGVGEKGE-PGEAGNPGPPGEAGVGGPKGERGEKGEAGPPGAAGPPGAKG 1297
Score = 27.3 bits (59), Expect = 8.7
Identities = 30/100 (30%), Positives = 33/100 (33%), Gaps = 20/100 (20%)
Query: 94 GLPGPAA----NSCRGPTAWGRVTTCEVGTTWGRFNSGEVGLRPVGYPGGGESGTTCGAA 149
G PGP N GP VG+ G GE G G PG G A
Sbjct: 1222 GPPGPRGPQGPNGADGPQG----PPGSVGSVGGVGEKGEPG--EAGNPGPP------GEA 1269
Query: 150 TAGTGPGGRGKVAAVGGPGTTWARG----PRTSSPRAGPG 185
G G RG+ G PG G P P+ PG
Sbjct: 1270 GVGGPKGERGEKGEAGPPGAAGPPGAKGPPGDDGPKGNPG 1309
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.134 0.440
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,795,765
Number of Sequences: 37866
Number of extensions: 668534
Number of successful extensions: 5916
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 344
Number of HSP's that attempted gapping in prelim test: 3722
Number of HSP's gapped (non-prelim): 1898
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.