Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC730254 Sequence: fasta or formatted (189aa) NCBI GI: 113411617
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {189aa} PREDICTED: hypothetical protein
alt prot {128aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.9         30           2
 C cysteine            2.1          4           2
 D aspartate           1.1          2           1
 E glutamate           6.3         12           2
 F phenylalanine       0.5          1           1
 G glycine            11.6         22           2
 H histidine           2.1          4           1
 I isoleucine          0.0          0           0
 K lysine              2.1          4           1
 L leucine             9.5         18           2
 M methionine          0.5          1           1
 N asparagine          0.0          0           0
 P proline            10.6         20           2
 Q glutamine           2.1          4           1
 R arginine           14.3         27           3
 S serine             13.2         25           3
 T threonine           2.1          4           1
 V valine              4.2          8           1
 W tryptophan          1.6          3           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC730254             1.000   PREDICTED: hypothetical protein 
LOC730254             0.220   PREDICTED: hypothetical protein 
LOC100290691          0.059   PREDICTED: hypothetical protein XP_002347934 
LOC100288156          0.059   PREDICTED: hypothetical protein XP_002344202 
LOC100292801          0.056   PREDICTED: hypothetical protein 
LOC729417             0.056   PREDICTED: hypothetical protein 
LOC729417             0.056   PREDICTED: hypothetical protein 
LOC729417             0.056   PREDICTED: hypothetical protein 
LOC100293375          0.042   PREDICTED: hypothetical protein 
WIPF2                 0.042   WIRE protein 
LOC100132839          0.039   PREDICTED: hypothetical protein 
LOC100132839          0.039   PREDICTED: hypothetical protein 
LOC100129932          0.037   PREDICTED: hypothetical protein 
LOC100129932          0.037   PREDICTED: hypothetical protein 
LOC100129932          0.037   PREDICTED: hypothetical protein 
PAK4                  0.037   p21-activated kinase 4 isoform 1 
PAK4                  0.037   p21-activated kinase 4 isoform 1 
PAK4                  0.037   p21-activated kinase 4 isoform 1 
LOC100131165          0.031   PREDICTED: hypothetical protein 
LOC100290023          0.031   PREDICTED: hypothetical protein XP_002348147 
MICALL1               0.031   molecule interacting with Rab13 
RBM20                 0.031   RNA binding motif protein 20 
MLLT6                 0.028   myeloid/lymphoid or mixed-lineage leukemia (trithora...
LOC100290649          0.028   PREDICTED: hypothetical protein XP_002348220 
LOC100289318          0.028   PREDICTED: hypothetical protein XP_002343871 
LOC100292172          0.025   PREDICTED: hypothetical protein 
OTOG                  0.025   PREDICTED: otogelin isoform 1 
OTOG                  0.025   PREDICTED: otogelin isoform 2 
LOC100127987          0.025   PREDICTED: hypothetical protein LOC100127987 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press