Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239756978
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
(187 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo ... 394 e-110
gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo ... 182 1e-46
gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo ... 182 1e-46
gi|27894378 chloride intracellular channel 6 [Homo sapiens] 45 5e-05
gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens] 40 9e-04
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 40 0.002
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 39 0.002
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 39 0.002
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 39 0.003
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 39 0.003
gi|116805350 homeo box (H6 family) 1 [Homo sapiens] 39 0.003
gi|115511036 alpha-kinase 3 [Homo sapiens] 39 0.003
gi|57222570 codanin 1 [Homo sapiens] 38 0.004
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 38 0.006
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 37 0.013
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 37 0.013
gi|110832843 TBP-associated factor 4 [Homo sapiens] 37 0.013
gi|58761544 amine oxidase (flavin containing) domain 2 isoform a... 37 0.013
gi|58761546 amine oxidase (flavin containing) domain 2 isoform b... 37 0.013
gi|28269687 zygote arrest 1 [Homo sapiens] 37 0.013
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 36 0.017
gi|239752744 PREDICTED: hypothetical protein [Homo sapiens] 35 0.029
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 35 0.029
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 35 0.038
gi|119829187 alpha 1 type XVII collagen [Homo sapiens] 35 0.038
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 35 0.049
gi|194363768 homeobox D9 [Homo sapiens] 35 0.049
gi|239755656 PREDICTED: hypothetical protein [Homo sapiens] 35 0.049
gi|239754458 PREDICTED: hypothetical protein [Homo sapiens] 35 0.049
>gi|239756978 PREDICTED: hypothetical protein XP_002345135 [Homo
sapiens]
Length = 187
Score = 394 bits (1013), Expect = e-110
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MGVCLIPLGPNATRPRGLLHISHSGAQALGTAVVHIPLMTDHQRTGGRAQQQGIFHVAPN 60
MGVCLIPLGPNATRPRGLLHISHSGAQALGTAVVHIPLMTDHQRTGGRAQQQGIFHVAPN
Sbjct: 1 MGVCLIPLGPNATRPRGLLHISHSGAQALGTAVVHIPLMTDHQRTGGRAQQQGIFHVAPN 60
Query: 61 RPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG 120
RPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG
Sbjct: 61 RPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG 120
Query: 121 PGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGT 180
PGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGT
Sbjct: 121 PGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGT 180
Query: 181 GPTVGCY 187
GPTVGCY
Sbjct: 181 GPTVGCY 187
>gi|239751491 PREDICTED: hypothetical protein XP_002347883 [Homo
sapiens]
Length = 333
Score = 182 bits (462), Expect = 1e-46
Identities = 95/125 (76%), Positives = 97/125 (77%), Gaps = 11/125 (8%)
Query: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 122
G+ PR A + GPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG G
Sbjct: 220 GRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSG 279
Query: 123 GLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 182
GLAEVRGG G RG GPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP
Sbjct: 280 GLAEVRGGP--GGLAEVRG---------GPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 328
Query: 183 TVGCY 187
TVGCY
Sbjct: 329 TVGCY 333
>gi|239745989 PREDICTED: hypothetical protein XP_002344188 [Homo
sapiens]
Length = 296
Score = 182 bits (462), Expect = 1e-46
Identities = 95/125 (76%), Positives = 97/125 (77%), Gaps = 11/125 (8%)
Query: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 122
G+ PR A + GPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG G
Sbjct: 183 GRGPRRARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGSG 242
Query: 123 GLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 182
GLAEVRGG G RG GPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP
Sbjct: 243 GLAEVRGGP--GGLAEVRG---------GPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGP 291
Query: 183 TVGCY 187
TVGCY
Sbjct: 292 TVGCY 296
>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
Length = 686
Score = 44.7 bits (104), Expect = 5e-05
Identities = 32/83 (38%), Positives = 36/83 (43%), Gaps = 8/83 (9%)
Query: 61 RPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG 120
RPG+ P A G EGPE +EE P G A V+ G GP RGPE R G
Sbjct: 27 RPGE-PGAAGG----EAEGPEGSEGAEEAPRGAAAVK---EAGGGGPDRGPEAEARGTRG 78
Query: 121 PGGLAEVRGGARRSGRGPRRGPE 143
G E GA P+ G E
Sbjct: 79 AHGETEAEEGAPEGAEVPQGGEE 101
Score = 38.9 bits (89), Expect = 0.003
Identities = 31/79 (39%), Positives = 35/79 (44%), Gaps = 7/79 (8%)
Query: 79 GPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGP 138
GP+ P E P LAE R G + G GPE +EE P G A V+ G GP
Sbjct: 13 GPQGPP---EVPAPLAE-RPGEPGAAGGEAEGPEGSEGAEEAPRGAAAVK---EAGGGGP 65
Query: 139 RRGPEVWPRSEEGPGGLAE 157
RGPE R G G E
Sbjct: 66 DRGPEAEARGTRGAHGETE 84
Score = 33.5 bits (75), Expect = 0.11
Identities = 36/123 (29%), Positives = 46/123 (37%), Gaps = 19/123 (15%)
Query: 43 QRTGGRAQQQGIFHVAPNRPGQRPRVAAG----------AWPRSEEGPEVWPR-SEEGPG 91
+R G QQ G ++P + VAAG AW +EE + SEE
Sbjct: 290 RRVSGEPQQSGDGSLSPQ--AEAIEVAAGESAGRSPGELAWDAAEEAEVPGVKGSEEAAP 347
Query: 92 GLAEVRGGARRSGRGPRRGP-EVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEE 150
G A G R G GP++ P E R E P G E + G P+ P E
Sbjct: 348 GDARADAGEDRVGDGPQQEPGEDEERRERSPEGPRE-----EEAAGGEEESPDSSPHGEA 402
Query: 151 GPG 153
G
Sbjct: 403 SRG 405
>gi|239749124 PREDICTED: zinc finger protein 716 [Homo sapiens]
Length = 1215
Score = 40.4 bits (93), Expect = 9e-04
Identities = 35/100 (35%), Positives = 43/100 (43%), Gaps = 21/100 (21%)
Query: 50 QQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 109
Q+ G P P + P V AG R+ +GPG A G AR SG R
Sbjct: 107 QRAGAAPRGPGGPARTPAVRAGR------------RAADGPGEEAPAPGRARFSGLSQPR 154
Query: 110 GPEVWPRSEEGPGGLAEVRGGA--RRSGRGPRRGPEVWPR 147
GP+ PR+ P RGGA R +G P RGP P+
Sbjct: 155 GPQ--PRAAVRPR-----RGGALPRGTGAVPERGPGTEPQ 187
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 39.7 bits (91), Expect = 0.002
Identities = 41/142 (28%), Positives = 56/142 (39%), Gaps = 21/142 (14%)
Query: 47 GRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRG 106
G A Q G P PG + P ++ GP + E GP GL G + G
Sbjct: 319 GSAGQAG----QPGSPGHQGLAGVPGQPGTKGGPG--DQGEPGPQGLPGFSGPPGKEG-- 370
Query: 107 PRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPE--VWPRSEEGPGGLAEVIIVKPR 164
E PR E GP G+ +G G + GP+ P+ E+GP G I P+
Sbjct: 371 -----EPGPRGEIGPQGIMGQKGDQGERGPVGQPGPQGRQGPKGEQGPPG-----IPGPQ 420
Query: 165 AMRGL-CSVGQEAKSGTGPTVG 185
+ G+ G K+G VG
Sbjct: 421 GLPGVKGDKGSPGKTGPRGKVG 442
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 39.3 bits (90), Expect = 0.002
Identities = 42/127 (33%), Positives = 48/127 (37%), Gaps = 33/127 (25%)
Query: 46 GGRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVW-----PRSEE----GPGGLAEV 96
GG +G+ H P G P G P GP + PR + GPG +
Sbjct: 632 GGPGGPKGMQHFPPGPGGPMPGPHGG--PGGPVGPRLLGPPPPPRGGDPFWDGPGD--PM 687
Query: 97 RGGARRSGRGPRRGPEVWPRSEEGPGG---------LAEVRGGARRSGRGPRRGPEVWPR 147
RGG R G GP GP + R G GG RGG RSG GP P
Sbjct: 688 RGGPMRGGPGP--GPGPYHRGRGGRGGNEPPPPPPPFRGARGG--RSGGGP-------PN 736
Query: 148 SEEGPGG 154
GPGG
Sbjct: 737 GRGGPGG 743
Score = 38.5 bits (88), Expect = 0.003
Identities = 41/115 (35%), Positives = 43/115 (37%), Gaps = 15/115 (13%)
Query: 42 HQRTGGRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGAR 101
H+ GGR + P P R A G RS GP P GPGG V GG
Sbjct: 704 HRGRGGRGGNE------PPPPPPPFRGARGG--RSGGGP---PNGRGGPGG-GMVGGGGH 751
Query: 102 RSGRGPR--RGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGG 154
R GP G R EGPGG G G G G R EGPGG
Sbjct: 752 RPHEGPGGGMGNSSGHRPHEGPGG-GMGSGHRPHEGPGGSMGGGGGHRPHEGPGG 805
Score = 38.5 bits (88), Expect = 0.003
Identities = 38/119 (31%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 42 HQRTGGRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEV------WPRSEEGPGGLAE 95
H+ GG G+ + + +RP + P G+ R EGP R EGPGG
Sbjct: 754 HEGPGG-----GMGNSSGHRPHEGPGGGMGSGHRPHEGPGGSMGGGGGHRPHEGPGGGIS 808
Query: 96 VRGGAR-RSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 153
G R G G G R EGPGG GG R GP G R + PG
Sbjct: 809 GGSGHRPHEGPGGGMGAGGGHRPHEGPGGSMGGSGG-HRPHEGPGHGGPHGHRPHDVPG 866
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 39.3 bits (90), Expect = 0.002
Identities = 37/103 (35%), Positives = 46/103 (44%), Gaps = 23/103 (22%)
Query: 71 GAWPRSEEGPEVWPRSEEGP--GGLAE--VRGGA--RRSGRGPRRGPEVWP--------- 115
GAW G E +PR E P G E R GA R GR P RG + +P
Sbjct: 1075 GAWEGRRPGDERFPRDPEDPRFRGRREESFRRGAPPRHEGRAPPRGRDGFPGPEDFGPEE 1134
Query: 116 ---RSEEGPGGLAEVRGGARRSGRGPRRG----PEVWPRSEEG 151
SEE G ++RG R + RG R+G P+ +PR E G
Sbjct: 1135 NFDASEEAARG-RDLRGRGRGTPRGGRKGLLPTPDEFPRFEGG 1176
Score = 32.7 bits (73), Expect = 0.19
Identities = 32/90 (35%), Positives = 38/90 (42%), Gaps = 18/90 (20%)
Query: 81 EVWPRSEEGPGGLAEVRGGARRSGRGPRRGP-----------EVWPRSEEGP--GGLAE- 126
E W R GP + R + GRG RGP E +PR E P G E
Sbjct: 1043 EKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGAWEGRRPGDERFPRDPEDPRFRGRREE 1102
Query: 127 -VRGGA--RRSGRGPRRGPEVWPRSEE-GP 152
R GA R GR P RG + +P E+ GP
Sbjct: 1103 SFRRGAPPRHEGRAPPRGRDGFPGPEDFGP 1132
Score = 28.9 bits (63), Expect = 2.7
Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 3/68 (4%)
Query: 85 RSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEV 144
R EG GG RR G GP P+ SE G A GA G R G E
Sbjct: 1030 REFEGRGGPLPQEEKWRRGGPGPPFPPDHREFSEGDGRGAARGPPGA---WEGRRPGDER 1086
Query: 145 WPRSEEGP 152
+PR E P
Sbjct: 1087 FPRDPEDP 1094
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 85 RSEEGPGGLAEVRGGARRSGRGP 107
R E PGG +E RGG R G GP
Sbjct: 1245 REMEAPGGPSEDRGGKGRGGPGP 1267
Score = 28.9 bits (63), Expect = 2.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 116 RSEEGPGGLAEVRGGARRSGRGP 138
R E PGG +E RGG R G GP
Sbjct: 1245 REMEAPGGPSEDRGGKGRGGPGP 1267
Score = 28.1 bits (61), Expect = 4.6
Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 8/102 (7%)
Query: 59 PNRPGQRPRVAAGAWPRSEEGP--EVWPRSEEGPGGLAEVRGGARRSG----RGPRRGPE 112
P+ Q P A P +G P+ + GP G +GG G +GP+ P+
Sbjct: 604 PHPSQQMPMNMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQ 663
Query: 113 VWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGG 154
PR ++ G R GP+ P P+ GP G
Sbjct: 664 GLPRPQDMHGPQGMQRHPGPHGPLGPQGPP--GPQGSSGPQG 703
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 83 WPRSEEGPG--GLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRG-PR 139
W ++ G G G RG R GRG RG P G GG GG G G PR
Sbjct: 64 WKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPR 123
Query: 140 RGPEVWPRSEEGPG 153
R P +P GPG
Sbjct: 124 REPVPFPSGSAGPG 137
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 74 PRSEEGPEVWPRSEEGPGGLAEVRG-----------GARRSG-RGPRRGPEVWPRSEEGP 121
P EEG S G E G G RR G RG RG W ++ G
Sbjct: 12 PEQEEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGG 71
Query: 122 GGLAEVRGGARRSGRGPRRG 141
G RG R GRG RG
Sbjct: 72 GVCGRGRGRGRGRGRGRGRG 91
Score = 27.7 bits (60), Expect = 6.0
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 98 GGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAE 157
GG G PRR P +P GPG G R + G R P PG E
Sbjct: 113 GGGSGGGGAPRREPVPFPSGSAGPG-----PRGPRATESGKRMDCPALP-----PGWKKE 162
Query: 158 VIIVKPRAMRGLCSVGQEAKSG 179
+I K G V + SG
Sbjct: 163 EVIRKSGLSAGKSDVYYFSPSG 184
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/74 (37%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 83 WPRSEEGPG--GLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRG-PR 139
W ++ G G G RG R GRG RG P G GG GG G G PR
Sbjct: 64 WKQAGRGGGVCGRGRGRGRGRGRGRGRGRGRGRPPSGGSGLGGDGGGCGGGGSGGGGAPR 123
Query: 140 RGPEVWPRSEEGPG 153
R P +P GPG
Sbjct: 124 REPVPFPSGSAGPG 137
Score = 32.0 bits (71), Expect = 0.32
Identities = 27/80 (33%), Positives = 29/80 (36%), Gaps = 12/80 (15%)
Query: 74 PRSEEGPEVWPRSEEGPGGLAEVRG-----------GARRSG-RGPRRGPEVWPRSEEGP 121
P EEG S G E G G RR G RG RG W ++ G
Sbjct: 12 PEQEEGESAAGGSGAGGDSAIEQGGQGSALAPSPVSGVRREGARGGGRGRGRWKQAGRGG 71
Query: 122 GGLAEVRGGARRSGRGPRRG 141
G RG R GRG RG
Sbjct: 72 GVCGRGRGRGRGRGRGRGRG 91
Score = 27.7 bits (60), Expect = 6.0
Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 10/82 (12%)
Query: 98 GGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAE 157
GG G PRR P +P GPG G R + G R P PG E
Sbjct: 113 GGGSGGGGAPRREPVPFPSGSAGPG-----PRGPRATESGKRMDCPALP-----PGWKKE 162
Query: 158 VIIVKPRAMRGLCSVGQEAKSG 179
+I K G V + SG
Sbjct: 163 EVIRKSGLSAGKSDVYYFSPSG 184
>gi|116805350 homeo box (H6 family) 1 [Homo sapiens]
Length = 348
Score = 38.9 bits (89), Expect = 0.003
Identities = 28/87 (32%), Positives = 34/87 (39%), Gaps = 13/87 (14%)
Query: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 122
G+ A GAWPR GPG A R A + RGP G E E P
Sbjct: 141 GEEMGRAEGAWPR-------------GPGPGAVQREAAELAARGPAAGTEEASELAEVPA 187
Query: 123 GLAEVRGGARRSGRGPRRGPEVWPRSE 149
E RGG G ++ V+ RS+
Sbjct: 188 AAGETRGGVGVGGGRKKKTRTVFSRSQ 214
Score = 34.3 bits (77), Expect = 0.064
Identities = 36/119 (30%), Positives = 43/119 (36%), Gaps = 12/119 (10%)
Query: 46 GGRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEG----PEVWPRSEEGPGGLAEVRGGAR 101
GG A+ + + + P G PR G P G +PR+ G GG R
Sbjct: 78 GGEARARAL--LGPGALGLGPRPPPGPGPPFALGCGGAARWYPRAHGGYGGGLSPDTSDR 135
Query: 102 RS---GRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAE 157
S G R WPR GPG A R A + RGP G E E P E
Sbjct: 136 DSPETGEEMGRAEGAWPR---GPGPGAVQREAAELAARGPAAGTEEASELAEVPAAAGE 191
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 38.5 bits (88), Expect = 0.003
Identities = 66/208 (31%), Positives = 75/208 (36%), Gaps = 42/208 (20%)
Query: 3 VCLIPLGPNATRPRGLLHISHSGAQALGTA----------VVHI-------------PLM 39
V L PL P RPRG L I H+G + G V+H PL
Sbjct: 48 VDLAPLAP--ARPRGPL-ICHTGHEQAGREPGPGSSTKGPVLHDQDTRCAFLPRPPGPLQ 104
Query: 40 TD----HQ--RTGGRAQQQGIFHVAPNRPG-QRPRVAAGAWPRSEEGPEVWPRSEEGPGG 92
T HQ + G G AP PG +PR A P + R G
Sbjct: 105 TRRYCRHQGRQGSGLGAGPGAGTWAPAPPGVSKPRCPGRARPGEGQQQVTTARPPAINRG 164
Query: 93 LAEVRGGARRSGRGPRRGPEVWPRSE-EGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEG 151
+ R GA +GRGP G W E G A GGA S R P RG RS G
Sbjct: 165 ARQPRAGAAAAGRGP--GAGAWRTGEAAASAGPAVGEGGAMGSRRAPSRGWGAGGRS--G 220
Query: 152 PGGLAE----VIIVKPRAMRGLCSVGQE 175
GG E V I P + L SV E
Sbjct: 221 AGGDGEDDGPVWIPSPASRSYLLSVRPE 248
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 38.1 bits (87), Expect = 0.004
Identities = 34/92 (36%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 49 AQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPR 108
A+ G P RPG PR + GA RS+ P +S LA R G RR G GP
Sbjct: 73 AKTPGASAALPGRPGGPPRGSRGA--RSQLFPPTEAQSTAAEAPLA--RRGGRRRGPGPA 128
Query: 109 RGPEVWPRSEEGPGGLAEVRGGARRSGRGPRR 140
R E G GL E G G G RR
Sbjct: 129 R--------ERGGRGLEEGVSGESLPGAGGRR 152
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 37.7 bits (86), Expect = 0.006
Identities = 37/106 (34%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 59 PNRPGQR-PRVAAGA-WPRSEEG-----PEVWPRSEEGPGGLAEVRGGARRSGRGPRRGP 111
P PG++ PR GA P+ + G E + E GP G A RG +GR +GP
Sbjct: 1461 PGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGPAGSRGLPGVAGRPGAKGP 1520
Query: 112 EVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEV-WPRSEEGPGGLA 156
E P GP G +G R G GP V P+ E+G G A
Sbjct: 1521 EGPP----GPTGRQGEKGEPGRPGDPAVVGPAVAGPKGEKGDVGPA 1562
Score = 32.3 bits (72), Expect = 0.24
Identities = 40/127 (31%), Positives = 48/127 (37%), Gaps = 36/127 (28%)
Query: 59 PNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSG-------RGP--RR 109
P RPG V PR +G EV + +EGP G + G A G RGP +
Sbjct: 1618 PGRPGPPGPVG----PRGRDG-EVGEKGDEGPPGDPGLPGKAGERGLRGAPGVRGPVGEK 1672
Query: 110 GPEVWP-----------------RSEEGPGG----LAEVRGGARRSGRGPRRGPEVWPRS 148
G + P R E GP G L + GAR G RG E PR
Sbjct: 1673 GDQGDPGEDGRNGSPGSSGPKGDRGEPGPPGPPGRLVDTGPGAREKGEPGDRGQE-GPRG 1731
Query: 149 EEGPGGL 155
+G GL
Sbjct: 1732 PKGDPGL 1738
Score = 29.6 bits (65), Expect = 1.6
Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 9/98 (9%)
Query: 59 PNRPGQRPRVAAGAWPRSEEGPEV-WPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRS 117
P PG+R P + P V P E+G G + G + G+ GP
Sbjct: 1739 PGAPGERGIEGFRGPPGPQGDPGVRGPAGEKGDRGPPGLDGRSGLDGKPGAAGPS----- 1793
Query: 118 EEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGL 155
GP G A G R G RG + P GP GL
Sbjct: 1794 --GPNGAAGKAGDPGRDGLPGLRGEQGLP-GPSGPPGL 1828
Score = 29.6 bits (65), Expect = 1.6
Identities = 34/112 (30%), Positives = 42/112 (37%), Gaps = 9/112 (8%)
Query: 81 EVWPRSEEGPGGLAEVRGGARRSGR----GPRRGP-EVWPRSEEGPGGLAEVRGGARRSG 135
E PR ++G GL RG A G+ GPR P V + GP G + G A G
Sbjct: 2142 EPGPRGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQG 2201
Query: 136 RGPRRGP--EVWPRSEEGPGGLAEVIIVKPRAMRGLCSVGQEAKSGTGPTVG 185
+G E P G V + P GL VG + G VG
Sbjct: 2202 PSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGL--VGPQGSPGLPGQVG 2251
Score = 28.9 bits (63), Expect = 2.7
Identities = 31/98 (31%), Positives = 38/98 (38%), Gaps = 18/98 (18%)
Query: 74 PRSEEGPEVWPRSEEGPGGLAEVRG-GARRSGRGPRRGP--EVWPRSEEGPGGLAEV--- 127
P+ + G E P +EGP G RG R GP+ P + R GP GLA
Sbjct: 1980 PKGDSG-EQGPPGKEGPIGFPGERGLKGDRGDPGPQGPPGLALGERGPPGPSGLAGEPGK 2038
Query: 128 ---------RGGARRSGRGPRRGP--EVWPRSEEGPGG 154
GG +GR RG E R E+G G
Sbjct: 2039 PGIPGLPGRAGGVGEAGRPGERGERGEKGERGEQGRDG 2076
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 36.6 bits (83), Expect = 0.013
Identities = 47/155 (30%), Positives = 59/155 (38%), Gaps = 23/155 (14%)
Query: 8 LGPNATRPRGLLHISHSGAQALGTAVVHIP-----LMTDHQRTGGRAQQQGIFHVAPNRP 62
L P R GL H+ H +A + P T + GG ++ GI N P
Sbjct: 183 LAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAGGLRKRPGITRTEGN-P 241
Query: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEG----PGGLA-EVRGGARRSGR-GPRRGPEVW-- 114
RP PR PE PR LA VR + SGR GP GP +
Sbjct: 242 SPRP-------PRRLTLPEDHPRLANARRRRKRALATRVRPAPQTSGRPGPLGGPAISVV 294
Query: 115 --PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 147
P S+ G ++ RGGAR G G + PR
Sbjct: 295 LSPASQAPEKGWSQSRGGARLGPEGQEPGRDQKPR 329
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 36.6 bits (83), Expect = 0.013
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 29/149 (19%)
Query: 47 GRAQQQGIFHVA---PNRPGQRPRVAAGAWPRSEEGPEVWP-RSEEGP---------GGL 93
GRA+++G + P P P + A A P E P R+ GP GG+
Sbjct: 41 GRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGV 100
Query: 94 AEVRGGARRSGRGPRRGPEVWPRSEEGPGG----------LAEVRGGARRSGRGPRRGPE 143
G R R PRR P R PG L +GG RSGR RG
Sbjct: 101 EAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGG--RSGRRGDRGDS 158
Query: 144 VWPRSEE----GPGGLAEVIIVKPRAMRG 168
W G G + + P + RG
Sbjct: 159 GWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 36.6 bits (83), Expect = 0.013
Identities = 38/111 (34%), Positives = 44/111 (39%), Gaps = 14/111 (12%)
Query: 47 GRAQQQGIFHVAPNRPG----QRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARR 102
GRA+ G P RPG +RP V AG P + + + P E G A V A
Sbjct: 93 GRARPGG---GGPQRPGPPSPRRPLVPAGPAPPAAK---LRPPPEGSAGSCAPVPAAAAV 146
Query: 103 SGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 153
+ GP P P GP LA G G GP GP P GPG
Sbjct: 147 AA-GPEPAP-AGPAKPAGPAALAARAGPG--PGPGPGPGPGPGPGKPAGPG 193
Score = 30.4 bits (67), Expect = 0.93
Identities = 22/66 (33%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 66 PRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLA 125
P AA A E P GP LA G G GP GP P GPG
Sbjct: 139 PVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPG--PGPGPGPGPGPGPGKPAGPGAAQ 196
Query: 126 EVRGGA 131
+ G A
Sbjct: 197 TLNGSA 202
>gi|58761544 amine oxidase (flavin containing) domain 2 isoform a
[Homo sapiens]
Length = 876
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 69 AAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEE-----GPGG 123
AA A +E GP SE G A+ G + + GP E PR +E PGG
Sbjct: 14 AAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGG 73
Query: 124 LAEVRGGARRSGRGPRRGPEVWPRS 148
LAE G A GP+ GP V P S
Sbjct: 74 LAEPPGSA-----GPQAGPTVVPGS 93
>gi|58761546 amine oxidase (flavin containing) domain 2 isoform b
[Homo sapiens]
Length = 852
Score = 36.6 bits (83), Expect = 0.013
Identities = 32/85 (37%), Positives = 38/85 (44%), Gaps = 10/85 (11%)
Query: 69 AAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEE-----GPGG 123
AA A +E GP SE G A+ G + + GP E PR +E PGG
Sbjct: 14 AAAAATGTEAGPGTAGGSENGSEVAAQPAGLSGPAEVGPGAVGERTPRKKEPPRASPPGG 73
Query: 124 LAEVRGGARRSGRGPRRGPEVWPRS 148
LAE G A GP+ GP V P S
Sbjct: 74 LAEPPGSA-----GPQAGPTVVPGS 93
>gi|28269687 zygote arrest 1 [Homo sapiens]
Length = 424
Score = 36.6 bits (83), Expect = 0.013
Identities = 28/91 (30%), Positives = 36/91 (39%), Gaps = 12/91 (13%)
Query: 58 APNRP-----GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPE 112
AP RP G+ +W + +GPE+ PR E G A R R G+ P G
Sbjct: 233 APRRPQSDDDGEAQAAVRASWEQPADGPELPPR--EAQEGEAAPRSALRSPGQPPSAG-- 288
Query: 113 VWPRSEEGPGGLAEVRGGARRSGRGPRRGPE 143
R+ +G G G S R P G E
Sbjct: 289 ---RARDGGDGREAAVAGEGPSPRSPELGKE 316
Score = 33.5 bits (75), Expect = 0.11
Identities = 40/125 (32%), Positives = 53/125 (42%), Gaps = 23/125 (18%)
Query: 43 QRTGGRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLA-EVRGGAR 101
Q+ R +QG RP + PR A P + + EGPG A E R GA
Sbjct: 153 QQPSRRGLEQGSPQNGAPRPMRFPRTVAVYSPLALRRLTAFL---EGPGPAAGEQRSGAS 209
Query: 102 RSGRGPR----RGPE---VW-------PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPR 147
RGP +GPE VW P+S++ E + R S P GPE+ PR
Sbjct: 210 DGERGPPPARLQGPEEGEVWTKKAPRRPQSDDD----GEAQAAVRASWEQPADGPELPPR 265
Query: 148 -SEEG 151
++EG
Sbjct: 266 EAQEG 270
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 36.2 bits (82), Expect = 0.017
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 29/149 (19%)
Query: 47 GRAQQQGIFHVA---PNRPGQRPRVAAGAWPRSEEGPEVWP-RSEEGP---------GGL 93
GRA+++G + P P P + A A P E P R+ GP GG+
Sbjct: 41 GRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGV 100
Query: 94 AEVRGGARRSGRGPRRGPEVWPRSEEGPGG----------LAEVRGGARRSGRGPRRGPE 143
G R R PRR P R PG L +GG RSGR RG
Sbjct: 101 EAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGG--RSGRRGDRGGS 158
Query: 144 VWPRSEE----GPGGLAEVIIVKPRAMRG 168
W G G + + P + RG
Sbjct: 159 GWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 36.2 bits (82), Expect = 0.017
Identities = 42/149 (28%), Positives = 53/149 (35%), Gaps = 29/149 (19%)
Query: 47 GRAQQQGIFHVA---PNRPGQRPRVAAGAWPRSEEGPEVWP-RSEEGP---------GGL 93
GRA+++G + P P P + A A P E P R+ GP GG+
Sbjct: 41 GRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAVPARAARGPPKRPAGGQTGGV 100
Query: 94 AEVRGGARRSGRGPRRGPEVWPRSEEGPGG----------LAEVRGGARRSGRGPRRGPE 143
G R R PRR P R PG L +GG RSGR RG
Sbjct: 101 EAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPLLTREKGG--RSGRRGDRGGS 158
Query: 144 VWPRSEE----GPGGLAEVIIVKPRAMRG 168
W G G + + P + RG
Sbjct: 159 GWSHGHTARVGGTGDSSAGLTTFPGSSRG 187
>gi|239752744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 361
Score = 35.4 bits (80), Expect = 0.029
Identities = 50/148 (33%), Positives = 56/148 (37%), Gaps = 22/148 (14%)
Query: 21 ISHSGAQALGTAVVHIPLMTDHQRTGGRAQQQGIF-HVAPNRPGQRPRVAAGAWPRSEEG 79
+ H G AL H RTG ++ + H+ P R Q + G EG
Sbjct: 218 VDHQGGFALAPTGSH--------RTGPGCTRRALLGHLPPRRCSQLRSL--GLRRAELEG 267
Query: 80 PEVWPRSEEGPGGLAEVRGGARRSGRGPR-----RG-PEVWP-RSEEGPGGL-AEVRGGA 131
R G G R GARR GR PR RG PE P RS G AE R GA
Sbjct: 268 ECQHERLGTGHGWSVAARPGARRGGRRPRSPSPARGEPEPEPERSGAARSGTGAESRAGA 327
Query: 132 RRSG---RGPRRGPEVWPRSEEGPGGLA 156
SG GP G V RS G A
Sbjct: 328 GASGALTSGPAAGSAVSRRSLLATAGAA 355
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 35.4 bits (80), Expect = 0.029
Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 18/82 (21%)
Query: 75 RSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRS 134
R E G + P E+GP GL G +G RRGP P+ E GPGG V G
Sbjct: 339 RGEPGEDGEP-GEQGPQGLGGPPGLPGSAGLPGRRGPP-GPKGEAGPGGPPGVPG----- 391
Query: 135 GRGPRRGPEVWPRSEEGPGGLA 156
R ++GP GLA
Sbjct: 392 -----------IRGDQGPSGLA 402
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 35.0 bits (79), Expect = 0.038
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRG---PRRGPEVWPRSEE 119
GQ V W R + P + +S G G + GGA+ G G R G +
Sbjct: 701 GQNAAVGINPWQRRGKKPRLG-KSRGGGGAKSRGSGGAKSRGSGGAKSRSGKKAAASKSH 759
Query: 120 GPGGLAEVRGGARRSGRGPR 139
G GG RGG +S G +
Sbjct: 760 GGGGAKRRRGGGAKSRSGEK 779
Score = 29.3 bits (64), Expect = 2.1
Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 24/156 (15%)
Query: 46 GGRAQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEG---------------- 89
GG Q+ A +R G++PR GA R +E + R +
Sbjct: 170 GGEKPQKAAAAGAKSRSGKKPR-RRGAKSRGDEDKKGRQREAKSRFGKTRGGRRKKHRRP 228
Query: 90 ---PGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWP 146
GG RGG ++ + RRG + + G + + RGG + R + +
Sbjct: 229 KPAAGGAKSRRGGGKKPQKQRRRGQKA---ATGGKSRVGKSRGGGDKKLRRQGQNAALAG 285
Query: 147 RSEEGPGGLAEVIIVKPRAMRGLCSV-GQEAKSGTG 181
G E K R RG S+ GQ + G G
Sbjct: 286 AKRRGAATAGEKPAAKGRGGRGPKSLGGQNPRWGRG 321
>gi|119829187 alpha 1 type XVII collagen [Homo sapiens]
Length = 1497
Score = 35.0 bits (79), Expect = 0.038
Identities = 43/124 (34%), Positives = 50/124 (40%), Gaps = 17/124 (13%)
Query: 66 PRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLA 125
PR AG P S E E E GP G V G G GP+ P GP GL
Sbjct: 631 PRGEAGP-PGSGEKGERGAAGEPGPHGPPGVPGSVGPKGSSGSPGPQGPP----GPVGLQ 685
Query: 126 EVRGGARRSGRGPRRGPEVWP-----RSEEGPGGLAEVIIVKPRAMRGL-CSVGQE-AKS 178
+RG G +GP P + E+GP GL MRGL +VG+ AK
Sbjct: 686 GLRGEVGLPGVKGDKGPMGPPGPKGDQGEKGPRGL-----TGEPGMRGLPGAVGEPGAKG 740
Query: 179 GTGP 182
GP
Sbjct: 741 AMGP 744
Score = 30.4 bits (67), Expect = 0.93
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 14/92 (15%)
Query: 74 PRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGP-----EVWPRSEEGPGGLAEVR 128
P+ ++G E PR G G+ + G G GP PR E+G G+ +R
Sbjct: 708 PKGDQG-EKGPRGLTGEPGMRGLPGAVGEPGAKGAMGPAGPDGHQGPRGEQGLTGMPGIR 766
Query: 129 GGARRSG-------RGPRRGPEVWPRSEEGPG 153
G SG GP +GP+ P + PG
Sbjct: 767 GPPGPSGDPGKPGLTGP-QGPQGLPGTPGRPG 797
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 34.7 bits (78), Expect = 0.049
Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 18/108 (16%)
Query: 59 PNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGP--EVWPR 116
P +PG PR + GP PR E GP G+ G SG GP E P
Sbjct: 903 PGKPG----------PRGQRGP-TGPRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPN 951
Query: 117 SEEGPGGLAEVRGGARRSGRG-----PRRGPEVWPRSEEGPGGLAEVI 159
+GP G +G G+ P + E + + GP G V+
Sbjct: 952 GPQGPTGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVV 999
Score = 30.4 bits (67), Expect = 0.93
Identities = 31/96 (32%), Positives = 38/96 (39%), Gaps = 20/96 (20%)
Query: 79 GPEVWPRSEEGPGGLAEVRGGARRSGRGPRRG--PEVWPRSEEGPGGLAEVRGGARRSGR 136
GP+ PR +GP G A G R+G RG + P+ + G GLA + G G
Sbjct: 589 GPQ-GPRGVQGPPGPAGKPGRRGRAGSDGARGMPGQTGPKGDRGFDGLAGLPGEKGHRGD 647
Query: 137 GPRRGP--------------EVWPR---SEEGPGGL 155
GP EV PR E GP GL
Sbjct: 648 PGPSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGL 683
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 34.7 bits (78), Expect = 0.049
Identities = 40/138 (28%), Positives = 51/138 (36%), Gaps = 18/138 (13%)
Query: 49 AQQQGIFHVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPR 108
A G++H P P P +AA A SE G V E PG GG G GP
Sbjct: 90 AAMSGLYH--PYVPP--PPLAASA---SEPGRYVRSWMEPLPGFPGGAGGGGGGGGGGPG 142
Query: 109 RGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGLAEVIIVKPRAMRG 168
RGP GP G A R G P P + + + + R
Sbjct: 143 RGP------SPGPSGPA----NGRHYGIKPETRAAPAPATAASTTSSSSTSL-SSSSKRT 191
Query: 169 LCSVGQEAKSGTGPTVGC 186
CSV +E++ +GP C
Sbjct: 192 ECSVARESQGSSGPEFSC 209
>gi|239755656 PREDICTED: hypothetical protein [Homo sapiens]
Length = 522
Score = 34.7 bits (78), Expect = 0.049
Identities = 30/81 (37%), Positives = 35/81 (43%), Gaps = 20/81 (24%)
Query: 63 GQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPG 122
G RPRVA +W EE PE EEG RG R GRG P + R
Sbjct: 14 GLRPRVATLSWEEEEEEPE-----EEG-------RGPLRVRGRGLVASPSILER------ 55
Query: 123 GLAEVRG--GARRSGRGPRRG 141
G ++ G G +R GR R G
Sbjct: 56 GYLQLTGSFGGQRRGRRVRGG 76
>gi|239754458 PREDICTED: hypothetical protein [Homo sapiens]
Length = 180
Score = 34.7 bits (78), Expect = 0.049
Identities = 26/83 (31%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 56 HVAPNRPGQRPRVAAGAWPRSEEGPEVWPRSEEGPGGLAEVRGGARRSGRGPRRGPEVWP 115
H P G+ P PR+ P + R PG L G + RGPR G WP
Sbjct: 17 HFPPAARGRLPGETLSPSPRAAALPPLQQRPPGAPGAL----GRPKPVSRGPRAGLREWP 72
Query: 116 RSEEGPGGLAEVRGGARRSGRGP 138
+ PG L GA R P
Sbjct: 73 QQPWRPGPL-----GAPLQDRAP 90
Score = 28.5 bits (62), Expect = 3.5
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 115 PRSEEGPGGLAEVRGGARRSGRGPRRGPEVWPRSEEGPGGL 155
P ++ P G G + RGPR G WP+ PG L
Sbjct: 41 PPLQQRPPGAPGALGRPKPVSRGPRAGLREWPQQPWRPGPL 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.139 0.446
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,885,707
Number of Sequences: 37866
Number of extensions: 614020
Number of successful extensions: 3026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 389
Number of HSP's that attempted gapping in prelim test: 2298
Number of HSP's gapped (non-prelim): 963
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.