Guide to the Human Genome
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Name: LOC100293438 Sequence: fasta or formatted (361aa) NCBI GI: 239752744
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.7         64           4
 C cysteine            2.8         10           1
 D aspartate           1.9          7           2
 E glutamate           5.3         19           2
 F phenylalanine       0.8          3           1
 G glycine            11.1         40           2
 H histidine           3.6         13           1
 I isoleucine          1.1          4           2
 K lysine              1.9          7           1
 L leucine             9.1         33           2
 M methionine          1.4          5           1
 N asparagine          0.6          2           1
 P proline             8.9         32           2
 Q glutamine           2.8         10           1
 R arginine           10.8         39           2
 S serine              9.4         34           2
 T threonine           5.3         19           1
 V valine              3.3         12           1
 W tryptophan          1.7          6           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.023   peripheral benzodiazepine receptor-associated prote...
FOXA1                 0.021   forkhead box A1 
LOC100293268          0.020   PREDICTED: hypothetical protein 
OTUD5                 0.020   OTU domain containing 5 isoform c 
OTUD5                 0.020   OTU domain containing 5 isoform a 
OTUD5                 0.020   OTU domain containing 5 isoform b 
OTUD5                 0.020   OTU domain containing 5 isoform b 
CCDC96                0.020   coiled-coil domain containing 96 
LOC100292568          0.020   PREDICTED: hypothetical protein 
LOC100291146          0.020   PREDICTED: hypothetical protein XP_002346600 
LOC100289534          0.020   PREDICTED: hypothetical protein XP_002342442 
LOC100132234          0.018   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.018   PREDICTED: hypothetical protein LOC100132234 
FLJ37078              0.018   hypothetical protein LOC222183 
LOC100132234          0.018   PREDICTED: hypothetical protein LOC100132234 
NKX3-1                0.017   NK3 homeobox 1 
LOC100289661          0.017   PREDICTED: hypothetical protein 
LOC100289661          0.017   PREDICTED: hypothetical protein XP_002343723 
LOC100287920          0.017   PREDICTED: hypothetical protein XP_002344198 
MAST3                 0.017   microtubule associated serine/threonine kinase 3 [H...
SRRM2                 0.017   splicing coactivator subunit SRm300 
SNAPC4                0.017   small nuclear RNA activating complex, polypeptide 4,...
ANKRD56               0.017   ankyrin repeat domain 56 
MLL                   0.017   myeloid/lymphoid or mixed-lineage leukemia protein [...
CDC2L5                0.017   cell division cycle 2-like 5 isoform 1 
CDC2L5                0.017   cell division cycle 2-like 5 isoform 2 
LOC100292397          0.016   PREDICTED: hypothetical protein 
LOC728767             0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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