Guide to the Human Genome
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Name: KDM1 Sequence: fasta or formatted (852aa) NCBI GI: 58761546
Description:

amine oxidase (flavin containing) domain 2 isoform b

Referenced in:

Histones, Related Proteins, and Modifying Enzymes
Urea Cycle, Nitric Oxide, and Polyamines

Other entries for this name:
alt prot [876aa] amine oxidase (flavin containing) domain 2 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.2         87          12
 C cysteine            1.1          9           1
 D aspartate           3.8         32           3
 E glutamate           8.2         70           3
 F phenylalanine       3.2         27           2
 G glycine             7.7         66           2
 H histidine           1.8         15           1
 I isoleucine          3.8         32           3
 K lysine              6.0         51           2
 L leucine             9.3         79           2
 M methionine          1.8         15           1
 N asparagine          3.6         31           2
 P proline             7.6         65           5
 Q glutamine           5.0         43           2
 R arginine            5.0         43           2
 S serine              6.2         53           2
 T threonine           5.2         44           2
 V valine              7.0         60           2
 W tryptophan          1.1          9           1
 Y tyrosine            2.5         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amine oxidase (flavin containing) domain 2 isoform b... 
KDM1                  0.989   amine oxidase (flavin containing) domain 2 isoform a...
AOF1                  0.094   amine oxidase (flavin containing) domain 1 
PAOX                  0.065   polyamine oxidase isoform 1 
SMOX                  0.061   spermine oxidase isoform 2 
SMOX                  0.061   spermine oxidase isoform 1 
SMOX                  0.057   spermine oxidase isoform 4 
MAOB                  0.021   monoamine oxidase B 
IL4I1                 0.020   interleukin 4 induced 1 isoform 1 precursor 
IL4I1                 0.020   interleukin 4 induced 1 isoform 2 
MAOA                  0.020   monoamine oxidase A 
SMOX                  0.019   spermine oxidase isoform 3 
PABPN1                0.019   poly(A) binding protein, nuclear 1 
PAOX                  0.017   polyamine oxidase isoform 4 
CEP164                0.017   centrosomal protein 164kDa 
SMARCD1               0.014   SWI/SNF-related matrix-associated actin-dependent r...
SMARCD1               0.014   SWI/SNF-related matrix-associated actin-dependent r...
SEC16A                0.014   SEC16 homolog A 
RAI14                 0.014   retinoic acid induced 14 isoform d 
RAI14                 0.014   retinoic acid induced 14 isoform c 
RAI14                 0.014   retinoic acid induced 14 isoform b 
RAI14                 0.014   retinoic acid induced 14 isoform a 
RAI14                 0.014   retinoic acid induced 14 isoform a 
RAI14                 0.014   retinoic acid induced 14 isoform a 
PELP1                 0.013   proline, glutamic acid and leucine rich protein 1 [...
ARID1A                0.013   AT rich interactive domain 1A isoform a 
ARID1A                0.013   AT rich interactive domain 1A isoform b 
SMARCC2               0.013   SWI/SNF-related matrix-associated actin-dependent re...
SMARCC2               0.013   SWI/SNF-related matrix-associated actin-dependent r...
BAT2                  0.013   HLA-B associated transcript-2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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