Guide to the Human Genome
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Name: LOC100291961 Sequence: fasta or formatted (187aa) NCBI GI: 239756978
Description:

PREDICTED: hypothetical protein XP_002345135

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.6         16           2
 C cysteine            1.6          3           1
 D aspartate           0.5          1           1
 E glutamate           8.0         15           2
 F phenylalanine       0.5          1           1
 G glycine            18.7         35           2
 H histidine           2.7          5           1
 I isoleucine          3.2          6           2
 K lysine              1.1          2           1
 L leucine             5.3         10           2
 M methionine          1.6          3           1
 N asparagine          1.1          2           1
 P proline            11.2         21           1
 Q glutamine           3.7          7           3
 R arginine           13.4         25           2
 S serine              5.3         10           1
 T threonine           3.2          6           1
 V valine              7.5         14           2
 W tryptophan          2.1          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345135 
LOC100291147          0.425   PREDICTED: hypothetical protein XP_002347883 
LOC100289560          0.425   PREDICTED: hypothetical protein XP_002344188 
CLIC6                 0.054   chloride intracellular channel 6 
ZNF716                0.041   PREDICTED: zinc finger protein 716 
COL9A2                0.041   alpha 2 type IX collagen 
PPP1R10               0.038   protein phosphatase 1, regulatory subunit 10 
WDR33                 0.038   WD repeat domain 33 isoform 1 
MBD2                  0.038   methyl-CpG binding domain protein 2 testis-specific i...
MBD2                  0.038   methyl-CpG binding domain protein 2 isoform 1 
HMX1                  0.038   homeo box (H6 family) 1 
ALPK3                 0.038   alpha-kinase 3 
CDAN1                 0.035   codanin 1 
COL7A1                0.035   alpha 1 type VII collagen precursor 
LOC100287297          0.033   PREDICTED: hypothetical protein XP_002342926 
LOC100131455          0.033   PREDICTED: hypothetical protein 
TAF4                  0.033   TBP-associated factor 4 
KDM1                  0.033   amine oxidase (flavin containing) domain 2 isoform a...
KDM1                  0.033   amine oxidase (flavin containing) domain 2 isoform b...
ZAR1                  0.033   zygote arrest 1 
LOC100131455          0.030   PREDICTED: hypothetical protein 
LOC100131455          0.030   PREDICTED: hypothetical protein 
LOC100293438          0.027   PREDICTED: hypothetical protein 
COL8A2                0.027   collagen, type VIII, alpha 2 
LOC100292370          0.027   PREDICTED: hypothetical protein 
COL17A1               0.027   alpha 1 type XVII collagen 
COL5A1                0.027   alpha 1 type V collagen preproprotein 
HOXD9                 0.027   homeobox D9 
LOC100293795          0.027   PREDICTED: hypothetical protein 
LOC100292589          0.027   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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