Guide to the Human Genome
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Name: HOXD9 Sequence: fasta or formatted (352aa) NCBI GI: 194363768
Description:

homeobox D9

Referenced in:

HOX Genes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.2         43           4
 C cysteine            2.0          7           1
 D aspartate           2.0          7           1
 E glutamate           5.7         20           3
 F phenylalanine       3.1         11           1
 G glycine            13.1         46          10
 H histidine           1.7          6           1
 I isoleucine          2.0          7           1
 K lysine              4.8         17           2
 L leucine             4.8         17           1
 M methionine          2.3          8           1
 N asparagine          2.6          9           2
 P proline            10.2         36           4
 Q glutamine           3.7         13           4
 R arginine            6.0         21           2
 S serine             12.2         43           4
 T threonine           4.8         17           2
 V valine              2.8         10           1
 W tryptophan          1.1          4           1
 Y tyrosine            2.8         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   homeobox D9 
HOXC9                 0.324   homeobox C9 
HOXA9                 0.278   homeobox A9 
HOXB9                 0.268   homeobox B9 
HOXA10                0.173   homeobox A10 isoform a 
HOXD10                0.150   homeobox D10 
HOXC10                0.146   homeobox C10 
HOXA10                0.138   homeobox A10 isoform b 
HOXD11                0.128   homeobox D11 
HOXA5                 0.117   homeobox A5 
HOXA11                0.116   homeobox A11 
MNX1                  0.114   homeo box HB9 
HOXA7                 0.107   homeobox A7 
HOXC11                0.107   homeobox C11 
HOXB7                 0.107   homeobox B7 
HOXC5                 0.107   homeobox C5 
HOXA6                 0.104   homeobox A6 
HOXB3                 0.103   homeobox B3 
HOXB5                 0.100   homeobox B5 
HOXC8                 0.098   homeobox C8 
HOXB6                 0.098   homeobox B6 
HOXB8                 0.097   homeobox B8 
HOXD3                 0.094   homeobox D3 
HOXD4                 0.093   homeobox D4 
HOXC12                0.091   homeobox C12 
HOXC13                0.091   homeobox C13 
HOXA13                0.091   homeobox A13 
HOXD8                 0.090   homeobox D8 
HOXC6                 0.090   homeobox C6 isoform 1 
MEOX1                 0.090   mesenchyme homeobox 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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