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Search of human proteins with 239756974
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756974 PREDICTED: hypothetical protein XP_002345129 [Homo
sapiens]
(169 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756974 PREDICTED: hypothetical protein XP_002345129 [Homo ... 355 1e-98
gi|239751487 PREDICTED: hypothetical protein XP_002347848 [Homo ... 355 1e-98
gi|119395754 keratin 5 [Homo sapiens] 39 0.003
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 37 0.006
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 37 0.006
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 37 0.006
gi|13775236 scratch [Homo sapiens] 37 0.008
gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo sapi... 36 0.018
gi|109452587 family with sequence similarity 98, member B isofor... 36 0.018
gi|239755298 PREDICTED: hypothetical protein [Homo sapiens] 35 0.031
gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo ... 35 0.031
gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo ... 35 0.031
gi|89276766 trophinin isoform 5 [Homo sapiens] 35 0.031
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 35 0.031
gi|194363768 homeobox D9 [Homo sapiens] 35 0.040
gi|188536004 zinc finger protein 469 [Homo sapiens] 35 0.040
gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sap... 35 0.040
gi|54873602 hypothetical protein LOC220382 [Homo sapiens] 35 0.040
gi|239756163 PREDICTED: hypothetical protein [Homo sapiens] 34 0.052
gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo ... 34 0.052
gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo ... 34 0.052
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 34 0.068
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 34 0.068
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 34 0.068
gi|109148552 keratin 3 [Homo sapiens] 34 0.068
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 34 0.068
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 34 0.068
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 34 0.068
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 34 0.068
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 34 0.068
>gi|239756974 PREDICTED: hypothetical protein XP_002345129 [Homo
sapiens]
Length = 169
Score = 355 bits (911), Expect = 1e-98
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MASGRTGSRTGMDQRSQLSLCPPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSS 60
MASGRTGSRTGMDQRSQLSLCPPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSS
Sbjct: 1 MASGRTGSRTGMDQRSQLSLCPPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSS 60
Query: 61 PATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGG 120
PATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGG
Sbjct: 61 PATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGG 120
Query: 121 GAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAGGSC 169
GAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAGGSC
Sbjct: 121 GAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAGGSC 169
>gi|239751487 PREDICTED: hypothetical protein XP_002347848 [Homo
sapiens]
Length = 169
Score = 355 bits (911), Expect = 1e-98
Identities = 169/169 (100%), Positives = 169/169 (100%)
Query: 1 MASGRTGSRTGMDQRSQLSLCPPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSS 60
MASGRTGSRTGMDQRSQLSLCPPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSS
Sbjct: 1 MASGRTGSRTGMDQRSQLSLCPPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSS 60
Query: 61 PATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGG 120
PATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGG
Sbjct: 61 PATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGG 120
Query: 121 GAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAGGSC 169
GAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAGGSC
Sbjct: 121 GAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEPQEEAGGSC 169
>gi|119395754 keratin 5 [Homo sapiens]
Length = 590
Score = 38.5 bits (88), Expect = 0.003
Identities = 20/49 (40%), Positives = 24/49 (48%)
Query: 102 GRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
G R F +G FGGGA G GGGA +G+G G G+GG
Sbjct: 81 GSFRNRFGAGAGGGYGFGGGAGSGFGFGGGAGGGFGLGGGAGFGGGFGG 129
Score = 33.5 bits (75), Expect = 0.089
Identities = 16/39 (41%), Positives = 17/39 (43%)
Query: 118 FGGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERISG 156
FG GA G GGGA +G G G G GG G
Sbjct: 87 FGAGAGGGYGFGGGAGSGFGFGGGAGGGFGLGGGAGFGG 125
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 37.4 bits (85), Expect = 0.006
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 31/130 (23%)
Query: 53 GVPHGRSSPATSPYAPNTGPRDPVLVVSQGFP-CESTAVPAPQQRDANRRGRGRAHFRDW 111
G+ H S+ A AP G DP+ +G+P + P + A G G
Sbjct: 206 GMMHSASAAAAG--AP--GSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGG----- 256
Query: 112 SGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFP--------------GWGGAERISGI 157
GGG G GGG A A G GAG A G+GG+ G+
Sbjct: 257 -------GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGV 309
Query: 158 RAEPQEEAGG 167
+ P+++ GG
Sbjct: 310 LSSPRQQGGG 319
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 37.4 bits (85), Expect = 0.006
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 31/130 (23%)
Query: 53 GVPHGRSSPATSPYAPNTGPRDPVLVVSQGFP-CESTAVPAPQQRDANRRGRGRAHFRDW 111
G+ H S+ A AP G DP+ +G+P + P + A G G
Sbjct: 206 GMMHSASAAAAG--AP--GSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGG----- 256
Query: 112 SGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFP--------------GWGGAERISGI 157
GGG G GGG A A G GAG A G+GG+ G+
Sbjct: 257 -------GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGV 309
Query: 158 RAEPQEEAGG 167
+ P+++ GG
Sbjct: 310 LSSPRQQGGG 319
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 37.4 bits (85), Expect = 0.006
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 31/130 (23%)
Query: 53 GVPHGRSSPATSPYAPNTGPRDPVLVVSQGFP-CESTAVPAPQQRDANRRGRGRAHFRDW 111
G+ H S+ A AP G DP+ +G+P + P + A G G
Sbjct: 206 GMMHSASAAAAG--AP--GSMDPLQNSHEGYPNSQCNHYPGYSRPGAGGGGGGGG----- 256
Query: 112 SGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFP--------------GWGGAERISGI 157
GGG G GGG A A G GAG A G+GG+ G+
Sbjct: 257 -------GGGGGSGGGGGGGGAGAGGAGAGAVAAAAAAAAAAAGGGGGGGYGGSSAGYGV 309
Query: 158 RAEPQEEAGG 167
+ P+++ GG
Sbjct: 310 LSSPRQQGGG 319
>gi|13775236 scratch [Homo sapiens]
Length = 348
Score = 37.0 bits (84), Expect = 0.008
Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 7/139 (5%)
Query: 34 EGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVPAP 93
+G A + P ++ G PA + AP PR + + G+ AV
Sbjct: 52 DGDAEAALLKGPSPEPMYAAAVRGELGPAAAGSAPPPTPRPELATAAGGYINGDAAVSEG 111
Query: 94 QQRDA----NRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWG 149
DA + R R +A + A T A GGG A +G+GP G G
Sbjct: 112 YAADAFFITDGRSRRKASNAGSAAAPSTASAAAPDGDAGGGGGAGGRSLGSGP---GGRG 168
Query: 150 GAERISGIRAEPQEEAGGS 168
G +G A A G+
Sbjct: 169 GTRAGAGTEARAGPGAAGA 187
>gi|5803036 heterogeneous nuclear ribonucleoprotein A0 [Homo
sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.018
Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 100 RRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAA---RAYGIGAGPQAFPGWGGAERISG 156
R GRGR RD +G GGG G GGG AYG G G ++ G G
Sbjct: 195 RGGRGRGGGRDQNGLSKGGGGGYNSYGGYGGGGGGGYNAYGGGGGGSSYGGSDYGNGFGG 254
Query: 157 IRAEPQEEA 165
+ Q ++
Sbjct: 255 FGSYSQHQS 263
>gi|109452587 family with sequence similarity 98, member B isoform 1
[Homo sapiens]
Length = 433
Score = 35.8 bits (81), Expect = 0.018
Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 9/60 (15%)
Query: 91 PAPQQRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
P P+ +R G W G GGG R G GGG +G G G GWGG
Sbjct: 318 PPPEMPPWQKRQEGGGGRGGWGGG----GGGGGRGGGGGGGGRGGWGGGGG-----GWGG 368
Score = 29.6 bits (65), Expect = 1.3
Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 90 VPAPQQRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWG 149
+P Q+R GRG G GGG R GGG G G G GWG
Sbjct: 322 MPPWQKRQEGGGGRGGWGGGGGGGGRGGGGGGGGRGGWGGGGG----GWGGGGGGGGGWG 377
Query: 150 G 150
G
Sbjct: 378 G 378
Score = 27.3 bits (59), Expect = 6.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 111 WSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
W G +GGG G GGG G G + G GG
Sbjct: 359 WGGGGGGWGGGGGGGGGWGGGGGGGRGGFQGRGDYGGRGG 398
>gi|239755298 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 35.0 bits (79), Expect = 0.031
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 23/132 (17%)
Query: 3 SGRTGSRTGM----DQRSQLSLCP---PPPAESSDCTVEGPKAARTDESPKGLIFHSGVP 55
+ R G+ TG+ +R+ L P P P + G A P G P
Sbjct: 140 AARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAGRSLAQ--P 197
Query: 56 HGRSSP-ATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ-------------QRDANRR 101
H +S P A SP +TGP DP ++G + +A AP+ +N+R
Sbjct: 198 HPQSCPLARSPAYRSTGPNDPASNFTEGTGRQRSAAAAPRPFVTPPTNRWTALSLPSNQR 257
Query: 102 GRGRAHFRDWSG 113
GRG+A D G
Sbjct: 258 GRGQAWPPDVGG 269
>gi|239749793 PREDICTED: hypothetical protein XP_002347163 [Homo
sapiens]
Length = 250
Score = 35.0 bits (79), Expect = 0.031
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 23/132 (17%)
Query: 3 SGRTGSRTGM----DQRSQLSLCP---PPPAESSDCTVEGPKAARTDESPKGLIFHSGVP 55
+ R G+ TG+ +R+ L P P P + G A P G P
Sbjct: 93 AARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAGRSLAQ--P 150
Query: 56 HGRSSP-ATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ-------------QRDANRR 101
H +S P A SP +TGP DP ++G + +A AP+ +N+R
Sbjct: 151 HPQSCPLARSPAYRSTGPNDPASNFTEGTGRQRSAAAAPRPFVTPPTNRWTALSLPSNQR 210
Query: 102 GRGRAHFRDWSG 113
GRG+A D G
Sbjct: 211 GRGQAWPPDVGG 222
>gi|239744053 PREDICTED: hypothetical protein XP_002343026 [Homo
sapiens]
Length = 250
Score = 35.0 bits (79), Expect = 0.031
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 23/132 (17%)
Query: 3 SGRTGSRTGM----DQRSQLSLCP---PPPAESSDCTVEGPKAARTDESPKGLIFHSGVP 55
+ R G+ TG+ +R+ L P P P + G A P G P
Sbjct: 93 AARRGAGTGLYPAAQRRAPAPLRPCAIPAPRRPAAAARLGSAARSPGAPPAGRSLAQ--P 150
Query: 56 HGRSSP-ATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ-------------QRDANRR 101
H +S P A SP +TGP DP ++G + +A AP+ +N+R
Sbjct: 151 HPQSCPLARSPAYRSTGPNDPASNFTEGTGRQRSAAAAPRPFVTPPTNRWTALSLPSNQR 210
Query: 102 GRGRAHFRDWSG 113
GRG+A D G
Sbjct: 211 GRGQAWPPDVGG 222
>gi|89276766 trophinin isoform 5 [Homo sapiens]
Length = 1431
Score = 35.0 bits (79), Expect = 0.031
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 106 AHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
A F G F GG + +SG GG + G G GP G+GG
Sbjct: 1217 AGFGGGLGTSAGFSGGLSTSSGFDGGLGTSAGFGGGPGTSTGFGG 1261
Score = 32.7 bits (73), Expect = 0.15
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 106 AHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
A F G FGGG ++G GG + G G G G+GG
Sbjct: 1247 AGFGGGPGTSTGFGGGLGTSAGFSGGLGTSAGFGGGLVTSDGFGG 1291
Score = 32.0 bits (71), Expect = 0.26
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 113 GAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
G FGGG ++G GGG + G G G+GG
Sbjct: 1244 GTSAGFGGGPGTSTGFGGGLGTSAGFSGGLGTSAGFGG 1281
Score = 32.0 bits (71), Expect = 0.26
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 118 FGGGAARASGIGGGAARAYGIGAGPQAFPGWG 149
F GG + +G GGG G G GP G+G
Sbjct: 1386 FSGGPSTGAGFGGGPNTGAGFGGGPSTSAGFG 1417
Score = 30.8 bits (68), Expect = 0.58
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 118 FGGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERIS 155
FGG + A+ GG + + G GA P +GGA S
Sbjct: 1109 FGGALSTAADFGGTPSNSIGFGAAPSTSVSFGGAHGTS 1146
Score = 29.3 bits (64), Expect = 1.7
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 111 WSGA---EPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERIS 155
+SGA P FGG + ++G GG + A G P G+G A S
Sbjct: 1089 FSGAPITNPGFGGAFSTSAGFGGALSTAADFGGTPSNSIGFGAAPSTS 1136
Score = 28.9 bits (63), Expect = 2.2
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 118 FGGGAARASGIGGGAARAYGIGAGPQAFPGW-GGAERISGIRAEPQEEAG 166
FGGG ++G GGG + G G G+ GG +G P G
Sbjct: 1209 FGGGLNTSAGFGGGLGTSAGFSGGLSTSSGFDGGLGTSAGFGGGPGTSTG 1258
Score = 28.9 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 118 FGGGAARASGIGGGAARAYGIGAGPQAFPGWG 149
FGGG +G GGG + + G G+G + G
Sbjct: 1396 FGGGPNTGAGFGGGPSTSAGFGSGAASLGACG 1427
Score = 28.1 bits (61), Expect = 3.8
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 118 FGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
F GG ++G GGG + G G G G+ G
Sbjct: 1239 FDGGLGTSAGFGGGPGTSTGFGGGLGTSAGFSG 1271
Score = 27.7 bits (60), Expect = 4.9
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 9/65 (13%)
Query: 113 GAEPTFGGGAARASGIGGGAARAYGIGAGPQA--------FPGWG-GAERISGIRAEPQE 163
G +FG ++G GG + + G G+ P A G+G G+ +G EP
Sbjct: 1294 GTNASFGSTLGTSAGFSGGLSTSDGFGSRPNASFDRGLSTIIGFGSGSNTSTGFTGEPST 1353
Query: 164 EAGGS 168
G S
Sbjct: 1354 STGFS 1358
Score = 27.7 bits (60), Expect = 4.9
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 126 SGIGGGAARAYGIGAGPQAFPGWGGAERIS 155
SG GG + G G GP G+GG S
Sbjct: 1384 SGFSGGPSTGAGFGGGPNTGAGFGGGPSTS 1413
Score = 27.3 bits (59), Expect = 6.4
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 117 TFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
+FG G + +G GGG + G G G G+ G
Sbjct: 1198 SFGNGLSTNAGFGGGLNTSAGFGGGLGTSAGFSG 1231
Score = 27.3 bits (59), Expect = 6.4
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 113 GAEPTFGGGAARASGIGGGAARAYGIGAG 141
G F GG ++G GGG + G G G
Sbjct: 1264 GTSAGFSGGLGTSAGFGGGLVTSDGFGGG 1292
Score = 26.9 bits (58), Expect = 8.4
Identities = 17/57 (29%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 106 AHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGW-GGAERISGIRAEP 161
A F G FGGG + G GGG G+ G+ GG G + P
Sbjct: 1267 AGFSGGLGTSAGFGGGLVTSDGFGGGLGTNASFGSTLGTSAGFSGGLSTSDGFGSRP 1323
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 35.0 bits (79), Expect = 0.031
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 22 PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTG-PRDPVLVVS 80
PPPPA S + A+T + P +F G + R PYA G PR P V
Sbjct: 1854 PPPPAPSRIPIQDSLSQAQTSQPPSPQVFSPGSSNSRPPSPMDPYAKMVGTPRPP--PVG 1911
Query: 81 QGFPCESTAVP 91
F ++A P
Sbjct: 1912 HSFSRRNSAAP 1922
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 34.7 bits (78), Expect = 0.040
Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 8/70 (11%)
Query: 91 PAPQQRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
P P A+ GR + R W P F GGA G GGG G G GP P
Sbjct: 102 PPPLAASASEPGR---YVRSWMEPLPGFPGGAGGGGGGGGG-----GPGRGPSPGPSGPA 153
Query: 151 AERISGIRAE 160
R GI+ E
Sbjct: 154 NGRHYGIKPE 163
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 34.7 bits (78), Expect = 0.040
Identities = 37/135 (27%), Positives = 53/135 (39%), Gaps = 9/135 (6%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ 94
GP + +S G+ S P + P P G R ++G P + AP
Sbjct: 878 GPSSGHPLKSKAGVTPESKAPPPLPAATPDPQTPRPGDRG---CPARGRPKTRSLGLAPT 934
Query: 95 QRDANRRGRGRAHFRDWS-GAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGGAER 153
+ DA +GR + + + GGAA SG GGG + G P+ G G ER
Sbjct: 935 EADAPSQGRQQRRGKQLKLFRKDLDSGGAAEGSGSGGGGRAS---GLRPRRNDGLG--ER 989
Query: 154 ISGIRAEPQEEAGGS 168
P+ +A GS
Sbjct: 990 PPPRPRRPRTQAPGS 1004
>gi|222136583 inositol polyphosphate phosphatase-like 1 [Homo sapiens]
Length = 1258
Score = 34.7 bits (78), Expect = 0.040
Identities = 45/157 (28%), Positives = 62/157 (39%), Gaps = 26/157 (16%)
Query: 22 PPPPAESSDCTVEGPKAARTDESPKGLIFH---SGVPHGRSSPATSPYAPNTGPRDPVLV 78
P PP S T G A+ D S L S V + + PA S P GP + L
Sbjct: 1098 PLPPGPSPASTFLGEVASGDDRSCSVLQMAKTLSEVDYAPAGPARSALLP--GPLE--LQ 1153
Query: 79 VSQGFPCE---STAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARA 135
+G P + + P P+ R++ + D + P GG RASG+G A
Sbjct: 1154 PPRGLPSDYGRPLSFPPPRIRESIQE--------DLAEEAPCLQGG--RASGLGEAGMSA 1203
Query: 136 YGIGAGPQAFP------GWGGAERISGIRAEPQEEAG 166
+ G + + GW E +S I E EEAG
Sbjct: 1204 WLRAIGLERYEEGLVHNGWDDLEFLSDITEEDLEEAG 1240
>gi|54873602 hypothetical protein LOC220382 [Homo sapiens]
Length = 426
Score = 34.7 bits (78), Expect = 0.040
Identities = 38/130 (29%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 55 PHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDW--- 111
P +PA P A + P + P + A A+ + R A D
Sbjct: 118 PSAADTPAKRPLAAPSAPTVAAPAHGKAAPRREASQAAAA---ASLQSRSLAALFDSLRH 174
Query: 112 --SGAEPTFGGGAARASGIGG-GAARAYGIGAGPQAFPGWGGAERISGIRA--------- 159
GAEP G AA A+G+GG G A G AGP GA ++ +RA
Sbjct: 175 VPGGAEPAGGEVAAPAAGLGGAGTGGAGGDVAGPAGATAIPGARKVP-LRARNLPPSFFT 233
Query: 160 EPQEEAGGSC 169
EP GG C
Sbjct: 234 EPSRAGGGGC 243
>gi|239756163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 34.3 bits (77), Expect = 0.052
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 32 TVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVP 91
T GP+ R + S F + P S P + +P GP P+LV GFP + P
Sbjct: 70 TNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR-SPRNGP--PLLVSHTGFPSPNRPRP 126
Query: 92 APQQRDANRRGRG 104
AP RG G
Sbjct: 127 APHLLGHRLRGPG 139
>gi|239750683 PREDICTED: hypothetical protein XP_002347505 [Homo
sapiens]
Length = 193
Score = 34.3 bits (77), Expect = 0.052
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 32 TVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVP 91
T GP+ R + S F + P S P + +P GP P+LV GFP + P
Sbjct: 70 TNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR-SPRNGP--PLLVSHTGFPSPNRPRP 126
Query: 92 APQQRDANRRGRG 104
AP RG G
Sbjct: 127 APHLLGHRLRGPG 139
>gi|239744993 PREDICTED: hypothetical protein XP_002343324 [Homo
sapiens]
Length = 193
Score = 34.3 bits (77), Expect = 0.052
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 3/73 (4%)
Query: 32 TVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVP 91
T GP+ R + S F + P S P + +P GP P+LV GFP + P
Sbjct: 70 TNPGPRHLRPETSSSKQHFRTKAPRNLSPPGRAR-SPRNGP--PLLVSHTGFPSPNRPRP 126
Query: 92 APQQRDANRRGRG 104
AP RG G
Sbjct: 127 APHLLGHRLRGPG 139
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 33.9 bits (76), Expect = 0.068
Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 4 GRTGSRTGMDQRSQLSLC--PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSP 61
G GS G+ ++ + P PP E+ V GPK R ++ G +G P + P
Sbjct: 1255 GSVGSVGGVGEKGEPGEAGNPGPPGEAG---VGGPKGERGEKGEAGPPGAAGPPGAKGPP 1311
Query: 62 ATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGGG 121
N GP GFP + P + A + G G D +P G
Sbjct: 1312 GDDGPKGNPGP--------VGFPGDPG--PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1361
Query: 122 AARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEP 161
+ A G R AG + G GA+ +G P
Sbjct: 1362 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1401
Score = 29.3 bits (64), Expect = 1.7
Identities = 43/159 (27%), Positives = 53/159 (33%), Gaps = 19/159 (11%)
Query: 22 PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQ 81
P PP E +GP + P G G+P + + TGP P VV
Sbjct: 924 PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGP 983
Query: 82 GFPCEST---------AVPAPQQRDANRRGRGRAHFRDWSGAEPTFG-GGAARASGIGG- 130
P T P P G+ + G + G G A G G
Sbjct: 984 QGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGE 1043
Query: 131 ----GAARAYGI--GAGPQAFPGWGGA--ERISGIRAEP 161
GA A G+ G GPQ PG G+ ER S A P
Sbjct: 1044 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGP 1082
Score = 28.9 bits (63), Expect = 2.2
Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ 94
GP+ +R P G G G P GP+ PV GFP P P
Sbjct: 898 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPV-----GFP-GPKGPPGPP 951
Query: 95 QRD---ANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAA----RAYGIGAGPQAFPG 147
+D + RG F+ +G P GG G G R + GP G
Sbjct: 952 GKDGLPGHPGQRGETGFQGKTG--PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQG 1009
Query: 148 WGGAERISGIRAEP 161
GA G + +P
Sbjct: 1010 LPGAAGKEGAKGDP 1023
Score = 27.3 bits (59), Expect = 6.4
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATS----PYAP--NTGPR-DPVLVVSQGFPCES 87
GP+ + P+GL+ G P P + P P N GP+ +P QG P
Sbjct: 652 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP-GP 710
Query: 88 TAVPAPQ---QRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQA 144
+P PQ + +G+ GA+ G GA G GP
Sbjct: 711 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG-PQGPIG 769
Query: 145 FPGWGGAERISGIR 158
+PG G + G+R
Sbjct: 770 YPGPRGVKGADGVR 783
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 33.9 bits (76), Expect = 0.068
Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 4 GRTGSRTGMDQRSQLSLC--PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSP 61
G GS G+ ++ + P PP E+ V GPK R ++ G +G P + P
Sbjct: 1204 GSVGSVGGVGEKGEPGEAGNPGPPGEAG---VGGPKGERGEKGEAGPPGAAGPPGAKGPP 1260
Query: 62 ATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGGG 121
N GP GFP + P + A + G G D +P G
Sbjct: 1261 GDDGPKGNPGP--------VGFPGDPG--PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1310
Query: 122 AARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEP 161
+ A G R AG + G GA+ +G P
Sbjct: 1311 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1350
Score = 29.3 bits (64), Expect = 1.7
Identities = 43/159 (27%), Positives = 53/159 (33%), Gaps = 19/159 (11%)
Query: 22 PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQ 81
P PP E +GP + P G G+P + + TGP P VV
Sbjct: 873 PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGP 932
Query: 82 GFPCEST---------AVPAPQQRDANRRGRGRAHFRDWSGAEPTFG-GGAARASGIGG- 130
P T P P G+ + G + G G A G G
Sbjct: 933 QGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGE 992
Query: 131 ----GAARAYGI--GAGPQAFPGWGGA--ERISGIRAEP 161
GA A G+ G GPQ PG G+ ER S A P
Sbjct: 993 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGP 1031
Score = 28.9 bits (63), Expect = 2.2
Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ 94
GP+ +R P G G G P GP+ PV GFP P P
Sbjct: 847 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPV-----GFP-GPKGPPGPP 900
Query: 95 QRD---ANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAA----RAYGIGAGPQAFPG 147
+D + RG F+ +G P GG G G R + GP G
Sbjct: 901 GKDGLPGHPGQRGETGFQGKTG--PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQG 958
Query: 148 WGGAERISGIRAEP 161
GA G + +P
Sbjct: 959 LPGAAGKEGAKGDP 972
Score = 27.3 bits (59), Expect = 6.4
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATS----PYAP--NTGPR-DPVLVVSQGFPCES 87
GP+ + P+GL+ G P P + P P N GP+ +P QG P
Sbjct: 601 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP-GP 659
Query: 88 TAVPAPQ---QRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQA 144
+P PQ + +G+ GA+ G GA G GP
Sbjct: 660 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG-PQGPIG 718
Query: 145 FPGWGGAERISGIR 158
+PG G + G+R
Sbjct: 719 YPGPRGVKGADGVR 732
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 33.9 bits (76), Expect = 0.068
Identities = 40/160 (25%), Positives = 57/160 (35%), Gaps = 15/160 (9%)
Query: 4 GRTGSRTGMDQRSQLSLC--PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSP 61
G GS G+ ++ + P PP E+ V GPK R ++ G +G P + P
Sbjct: 1243 GSVGSVGGVGEKGEPGEAGNPGPPGEAG---VGGPKGERGEKGEAGPPGAAGPPGAKGPP 1299
Query: 62 ATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQQRDANRRGRGRAHFRDWSGAEPTFGGG 121
N GP GFP + P + A + G G D +P G
Sbjct: 1300 GDDGPKGNPGP--------VGFPGDPG--PPGEPGPAGQDGVGGDKGEDGDPGQPGPPGP 1349
Query: 122 AARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIRAEP 161
+ A G R AG + G GA+ +G P
Sbjct: 1350 SGEAGPPGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPP 1389
Score = 29.3 bits (64), Expect = 1.7
Identities = 43/159 (27%), Positives = 53/159 (33%), Gaps = 19/159 (11%)
Query: 22 PPPPAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQ 81
P PP E +GP + P G G+P + + TGP P VV
Sbjct: 912 PGPPGERGPQGPQGPVGFPGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPGGVVGP 971
Query: 82 GFPCEST---------AVPAPQQRDANRRGRGRAHFRDWSGAEPTFG-GGAARASGIGG- 130
P T P P G+ + G + G G A G G
Sbjct: 972 QGPTGETGPIGERGHPGPPGPPGEQGLPGAAGKEGAKGDPGPQGISGKDGPAGLRGFPGE 1031
Query: 131 ----GAARAYGI--GAGPQAFPGWGGA--ERISGIRAEP 161
GA A G+ G GPQ PG G+ ER S A P
Sbjct: 1032 RGLPGAQGAPGLKGGEGPQGPPGPVGSPGERGSAGTAGP 1070
Score = 28.9 bits (63), Expect = 2.2
Identities = 35/134 (26%), Positives = 45/134 (33%), Gaps = 15/134 (11%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATSPYAPNTGPRDPVLVVSQGFPCESTAVPAPQ 94
GP+ +R P G G G P GP+ PV GFP P P
Sbjct: 886 GPRGSRGARGPTGKPGPKGTSGGDGPPGPPGERGPQGPQGPV-----GFP-GPKGPPGPP 939
Query: 95 QRD---ANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAA----RAYGIGAGPQAFPG 147
+D + RG F+ +G P GG G G R + GP G
Sbjct: 940 GKDGLPGHPGQRGETGFQGKTG--PPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQG 997
Query: 148 WGGAERISGIRAEP 161
GA G + +P
Sbjct: 998 LPGAAGKEGAKGDP 1011
Score = 27.3 bits (59), Expect = 6.4
Identities = 34/134 (25%), Positives = 49/134 (36%), Gaps = 12/134 (8%)
Query: 35 GPKAARTDESPKGLIFHSGVPHGRSSPATS----PYAP--NTGPR-DPVLVVSQGFPCES 87
GP+ + P+GL+ G P P + P P N GP+ +P QG P
Sbjct: 640 GPRGLPGEAGPRGLLGPRGTPGAPGQPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNP-GP 698
Query: 88 TAVPAPQ---QRDANRRGRGRAHFRDWSGAEPTFGGGAARASGIGGGAARAYGIGAGPQA 144
+P PQ + +G+ GA+ G GA G GP
Sbjct: 699 QGLPGPQGPIGPPGEKGPQGKPGLAGLPGADGPPGHPGKEGQSGEKGALGPPG-PQGPIG 757
Query: 145 FPGWGGAERISGIR 158
+PG G + G+R
Sbjct: 758 YPGPRGVKGADGVR 771
>gi|109148552 keratin 3 [Homo sapiens]
Length = 628
Score = 33.9 bits (76), Expect = 0.068
Identities = 17/40 (42%), Positives = 18/40 (45%)
Query: 119 GGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERISGIR 158
GGG+ G GGG G G G F G G ISG R
Sbjct: 557 GGGSGSGFGRGGGGGIGGGFGGGSSGFSGGSGFGSISGAR 596
Score = 29.6 bits (65), Expect = 1.3
Identities = 18/39 (46%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 112 SGAEPTFGGGAARASGIGGGAARAYGIGAGPQAFPGWGG 150
SG FGGG G+GGG A G G G F G GG
Sbjct: 99 SGYGGGFGGGFGGGRGMGGGFGGAGGFG-GAGGFGGAGG 136
Score = 27.7 bits (60), Expect = 4.9
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 119 GGGAARASGIGGGAARAYGIGAGPQAFPGWGGAERISG 156
G G+ G GGG G+G G G+GGA G
Sbjct: 96 GFGSGYGGGFGGGFGGGRGMGGGFGGAGGFGGAGGFGG 133
Score = 26.9 bits (58), Expect = 8.4
Identities = 19/48 (39%), Positives = 20/48 (41%), Gaps = 9/48 (18%)
Query: 118 FGGG---AARASGIGGGAARAYG------IGAGPQAFPGWGGAERISG 156
FGGG A A G GGG YG G G G+GGA G
Sbjct: 80 FGGGRSSCAFAGGYGGGFGSGYGGGFGGGFGGGRGMGGGFGGAGGFGG 127
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 33.9 bits (76), Expect = 0.068
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 16 SQLSLCPPP-------PAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAP 68
+ + L PPP E S +++GP P G + H G+P G P P P
Sbjct: 244 NSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLP-GPMGPPGLPGPP 302
Query: 69 NTGPR-DPVLV---------VSQGFPCESTAVPAPQQRDANRRGR-GRAHFRDWSGAEPT 117
GP+ DP + G P + A AP A +G G + GAE +
Sbjct: 303 --GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGS 360
Query: 118 FG-GGAARASGIGGGAARAYGIG---AGPQAFPGWGGAERISGI 157
G G G G A + G G GP PG G + +G+
Sbjct: 361 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV 404
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 33.9 bits (76), Expect = 0.068
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 16 SQLSLCPPP-------PAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAP 68
+ + L PPP E S +++GP P G + H G+P G P P P
Sbjct: 187 NSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLP-GPMGPPGLPGPP 245
Query: 69 NTGPR-DPVLV---------VSQGFPCESTAVPAPQQRDANRRGR-GRAHFRDWSGAEPT 117
GP+ DP + G P + A AP A +G G + GAE +
Sbjct: 246 --GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGS 303
Query: 118 FG-GGAARASGIGGGAARAYGIG---AGPQAFPGWGGAERISGI 157
G G G G A + G G GP PG G + +G+
Sbjct: 304 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV 347
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 33.9 bits (76), Expect = 0.068
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 16 SQLSLCPPP-------PAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAP 68
+ + L PPP E S +++GP P G + H G+P G P P P
Sbjct: 244 NSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLP-GPMGPPGLPGPP 302
Query: 69 NTGPR-DPVLV---------VSQGFPCESTAVPAPQQRDANRRGR-GRAHFRDWSGAEPT 117
GP+ DP + G P + A AP A +G G + GAE +
Sbjct: 303 --GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGS 360
Query: 118 FG-GGAARASGIGGGAARAYGIG---AGPQAFPGWGGAERISGI 157
G G G G A + G G GP PG G + +G+
Sbjct: 361 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV 404
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 33.9 bits (76), Expect = 0.068
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 16 SQLSLCPPP-------PAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAP 68
+ + L PPP E S +++GP P G + H G+P G P P P
Sbjct: 244 NSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLP-GPMGPPGLPGPP 302
Query: 69 NTGPR-DPVLV---------VSQGFPCESTAVPAPQQRDANRRGR-GRAHFRDWSGAEPT 117
GP+ DP + G P + A AP A +G G + GAE +
Sbjct: 303 --GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGS 360
Query: 118 FG-GGAARASGIGGGAARAYGIG---AGPQAFPGWGGAERISGI 157
G G G G A + G G GP PG G + +G+
Sbjct: 361 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV 404
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 33.9 bits (76), Expect = 0.068
Identities = 45/164 (27%), Positives = 62/164 (37%), Gaps = 25/164 (15%)
Query: 16 SQLSLCPPP-------PAESSDCTVEGPKAARTDESPKGLIFHSGVPHGRSSPATSPYAP 68
+ + L PPP E S +++GP P G + H G+P G P P P
Sbjct: 225 NSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPGPPGPSGPLGHPGLP-GPMGPPGLPGPP 283
Query: 69 NTGPR-DPVLV---------VSQGFPCESTAVPAPQQRDANRRGR-GRAHFRDWSGAEPT 117
GP+ DP + G P + A AP A +G G + GAE +
Sbjct: 284 --GPKGDPGIQGYHGRKGERGMPGMPGKHGAKGAPGIAVAGMKGEPGIPGTKGEKGAEGS 341
Query: 118 FG-GGAARASGIGGGAARAYGIG---AGPQAFPGWGGAERISGI 157
G G G G A + G G GP PG G + +G+
Sbjct: 342 PGLPGLLGQKGEKGDAGNSIGGGRGEPGPPGLPGPPGPKGEAGV 385
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.133 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,853,072
Number of Sequences: 37866
Number of extensions: 529879
Number of successful extensions: 3647
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 294
Number of HSP's that attempted gapping in prelim test: 2682
Number of HSP's gapped (non-prelim): 1043
length of query: 169
length of database: 18,247,518
effective HSP length: 95
effective length of query: 74
effective length of database: 14,650,248
effective search space: 1084118352
effective search space used: 1084118352
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.