Guide to the Human Genome
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Name: LOC100292010 Sequence: fasta or formatted (169aa) NCBI GI: 239756974
Description:

PREDICTED: hypothetical protein XP_002345129

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.0         22           2
 C cysteine            2.4          4           1
 D aspartate           3.6          6           1
 E glutamate           5.3          9           2
 F phenylalanine       3.0          5           1
 G glycine            16.6         28           3
 H histidine           1.8          3           1
 I isoleucine          3.0          5           1
 K lysine              1.2          2           1
 L leucine             2.4          4           1
 M methionine          1.2          2           1
 N asparagine          1.2          2           1
 P proline            11.2         19           4
 Q glutamine           4.1          7           2
 R arginine            9.5         16           2
 S serine             10.1         17           2
 T threonine           4.7          8           1
 V valine              3.6          6           2
 W tryptophan          1.2          2           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345129 
LOC100291240          1.000   PREDICTED: hypothetical protein XP_002347848 
KRT5                  0.042   keratin 5 
ARID1B                0.036   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.036   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.036   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
SCRT1                 0.036   scratch 
HNRNPA0               0.033   heterogeneous nuclear ribonucleoprotein A0 
FAM98B                0.033   family with sequence similarity 98, member B isofor...
LOC100294010          0.030   PREDICTED: hypothetical protein 
LOC100291514          0.030   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.030   PREDICTED: hypothetical protein XP_002343026 
TRO                   0.030   trophinin isoform 5 
MLL3                  0.030   myeloid/lymphoid or mixed-lineage leukemia 3 
HOXD9                 0.030   homeobox D9 
ZNF469                0.030   zinc finger protein 469 
INPPL1                0.030   inositol polyphosphate phosphatase-like 1 
FAM181B               0.030   hypothetical protein LOC220382 
LOC100293538          0.027   PREDICTED: hypothetical protein 
LOC100291263          0.027   PREDICTED: hypothetical protein XP_002347505 
LOC100287521          0.027   PREDICTED: hypothetical protein XP_002343324 
COL11A1               0.027   alpha 1 type XI collagen isoform B preproprotein [Ho...
COL11A1               0.027   alpha 1 type XI collagen isoform C preproprotein [Ho...
COL11A1               0.027   alpha 1 type XI collagen isoform A preproprotein [Ho...
KRT3                  0.027   keratin 3 
COL13A1               0.027   alpha 1 type XIII collagen isoform 20 
COL13A1               0.027   alpha 1 type XIII collagen isoform 16 
COL13A1               0.027   alpha 1 type XIII collagen isoform 13 
COL13A1               0.027   alpha 1 type XIII collagen isoform 12 
COL13A1               0.027   alpha 1 type XIII collagen isoform 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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