Guide to the Human Genome
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Name: LOC100294010 Sequence: fasta or formatted (297aa) NCBI GI: 239755298
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         36           4
 C cysteine            3.0          9           2
 D aspartate           2.0          6           1
 E glutamate           3.4         10           1
 F phenylalanine       2.4          7           1
 G glycine            10.1         30           2
 H histidine           0.7          2           1
 I isoleucine          2.4          7           1
 K lysine              2.0          6           1
 L leucine             9.8         29           3
 M methionine          0.7          2           1
 N asparagine          3.4         10           1
 P proline            12.1         36           2
 Q glutamine           3.4         10           1
 R arginine           10.1         30           2
 S serine              9.8         29           2
 T threonine           5.4         16           1
 V valine              3.7         11           2
 W tryptophan          1.0          3           1
 Y tyrosine            2.7          8           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291514          0.788   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.788   PREDICTED: hypothetical protein XP_002343026 
SCARF2                0.048   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.048   scavenger receptor class F, member 2 isoform 2 [Homo...
SYN1                  0.039   synapsin I isoform Ia 
SYN1                  0.039   synapsin I isoform Ib 
FLJ22184              0.034   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.032   PREDICTED: hypothetical protein FLJ22184 
LOC100289661          0.032   PREDICTED: hypothetical protein 
LOC100289661          0.032   PREDICTED: hypothetical protein XP_002343723 
LOC728650             0.032   PREDICTED: hypothetical protein 
TAF4                  0.032   TBP-associated factor 4 
TSC22D1               0.032   TSC22 domain family, member 1 isoform 1 
MAVS                  0.031   virus-induced signaling adapter 
UNCX                  0.031   UNC homeobox 
LOC100292172          0.031   PREDICTED: hypothetical protein 
UTF1                  0.031   undifferentiated embryonic cell transcription factor...
FLJ31945              0.029   PREDICTED: hypothetical protein 
LOC100293818          0.029   PREDICTED: hypothetical protein 
LOC100131102          0.029   PREDICTED: hypothetical protein 
LOC100131102          0.029   PREDICTED: hypothetical protein 
SHANK3                0.029   SH3 and multiple ankyrin repeat domains 3 
FAM48B1               0.029   hypothetical protein LOC100130302 
AGAP2                 0.029   centaurin, gamma 1 isoform PIKE-L 
LOC729580             0.029   PREDICTED: hypothetical protein 
LOC729580             0.029   PREDICTED: hypothetical protein 
LOC729580             0.029   PREDICTED: hypothetical protein 
FLJ37078              0.029   hypothetical protein LOC222183 
APC2                  0.029   adenomatosis polyposis coli 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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