Guide to the Human Genome
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Name: LOC100289311 Sequence: fasta or formatted (250aa) NCBI GI: 239744053
Description:

PREDICTED: hypothetical protein XP_002343026

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.6         34           4
 C cysteine            1.6          4           1
 D aspartate           2.4          6           1
 E glutamate           2.8          7           1
 F phenylalanine       1.6          4           1
 G glycine             9.6         24           2
 H histidine           1.2          3           1
 I isoleucine          2.0          5           1
 K lysine              0.8          2           1
 L leucine             8.0         20           3
 M methionine          0.8          2           1
 N asparagine          2.8          7           1
 P proline            13.6         34           2
 Q glutamine           4.0         10           1
 R arginine           12.0         30           2
 S serine             10.4         26           2
 T threonine           4.4         11           1
 V valine              4.8         12           2
 W tryptophan          1.2          3           1
 Y tyrosine            2.4          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343026 
LOC100291514          1.000   PREDICTED: hypothetical protein XP_002347163 
LOC100294010          0.949   PREDICTED: hypothetical protein 
SCARF2                0.058   scavenger receptor class F, member 2 isoform 1 [Homo...
SCARF2                0.058   scavenger receptor class F, member 2 isoform 2 [Homo...
SYN1                  0.049   synapsin I isoform Ia 
SYN1                  0.049   synapsin I isoform Ib 
TSC22D1               0.041   TSC22 domain family, member 1 isoform 1 
FLJ22184              0.039   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.039   PREDICTED: hypothetical protein LOC80164 
LOC100289661          0.039   PREDICTED: hypothetical protein 
LOC100289661          0.039   PREDICTED: hypothetical protein XP_002343723 
LOC728650             0.039   PREDICTED: hypothetical protein 
TAF4                  0.039   TBP-associated factor 4 
MAVS                  0.037   virus-induced signaling adapter 
UNCX                  0.037   UNC homeobox 
LOC100292172          0.037   PREDICTED: hypothetical protein 
UTF1                  0.037   undifferentiated embryonic cell transcription factor...
FLJ31945              0.035   PREDICTED: hypothetical protein 
LOC100293818          0.035   PREDICTED: hypothetical protein 
LOC100131102          0.035   PREDICTED: hypothetical protein 
LOC100131102          0.035   PREDICTED: hypothetical protein 
SHANK3                0.035   SH3 and multiple ankyrin repeat domains 3 
FAM48B1               0.035   hypothetical protein LOC100130302 
AGAP2                 0.035   centaurin, gamma 1 isoform PIKE-L 
LOC729580             0.035   PREDICTED: hypothetical protein 
LOC729580             0.035   PREDICTED: hypothetical protein 
LOC729580             0.035   PREDICTED: hypothetical protein 
APC2                  0.035   adenomatosis polyposis coli 2 
MEX3A                 0.035   MEX3A protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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