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Search of human proteins with 239756810
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756810 PREDICTED: hypothetical protein [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756810 PREDICTED: hypothetical protein [Homo sapiens] 445 e-125
gi|239751292 PREDICTED: hypothetical protein XP_002347787 [Homo ... 445 e-125
gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo ... 445 e-125
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 32 0.29
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 32 0.29
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 32 0.29
gi|239756916 PREDICTED: hypothetical protein [Homo sapiens] 31 0.85
gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo ... 31 0.85
gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo ... 31 0.85
gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens] 31 0.85
gi|169210827 PREDICTED: hypothetical protein [Homo sapiens] 30 1.1
gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo ... 30 1.4
gi|24308065 netrin 5 [Homo sapiens] 30 1.4
gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo s... 30 1.4
gi|13375913 transmembrane protein 149 [Homo sapiens] 30 1.9
gi|48762934 alpha 2 type I collagen [Homo sapiens] 29 2.5
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 29 2.5
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 29 2.5
gi|149944536 ichthyin protein [Homo sapiens] 29 2.5
gi|223972690 adenosine deaminase domain containing 2 isoform 2 [... 29 2.5
gi|223972688 adenosine deaminase domain containing 2 isoform 1 [... 29 2.5
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 29 2.5
gi|4503489 ephrin-B3 precursor [Homo sapiens] 29 2.5
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 29 3.2
gi|182765442 homeobox A10 isoform a [Homo sapiens] 29 3.2
gi|239757232 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|239751740 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo ... 29 3.2
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 29 3.2
gi|115511036 alpha-kinase 3 [Homo sapiens] 29 3.2
>gi|239756810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 207
Score = 445 bits (1145), Expect = e-125
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR
Sbjct: 1 MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
Query: 61 WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ
Sbjct: 61 WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
Query: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG
Sbjct: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
Query: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
ARGTQAMHPVREAGPGWISMESQCQDP
Sbjct: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
>gi|239751292 PREDICTED: hypothetical protein XP_002347787 [Homo
sapiens]
Length = 207
Score = 445 bits (1145), Expect = e-125
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR
Sbjct: 1 MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
Query: 61 WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ
Sbjct: 61 WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
Query: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG
Sbjct: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
Query: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
ARGTQAMHPVREAGPGWISMESQCQDP
Sbjct: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
>gi|239745787 PREDICTED: hypothetical protein XP_002343554 [Homo
sapiens]
Length = 207
Score = 445 bits (1145), Expect = e-125
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR
Sbjct: 1 MSLPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPR 60
Query: 61 WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ
Sbjct: 61 WPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPIGFQVLRQ 120
Query: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG
Sbjct: 121 MLAGILQLVLIQDDVKHFLGALCQLFRGRYLDIEVFGLRLSSGLDEPLKYLVWGERKGRG 180
Query: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
ARGTQAMHPVREAGPGWISMESQCQDP
Sbjct: 181 ARGTQAMHPVREAGPGWISMESQCQDP 207
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/53 (41%), Positives = 25/53 (47%)
Query: 3 LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRAC 55
LPAP + FG + + G VA LP G GKG PAP GTR C
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCC 179
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/53 (41%), Positives = 25/53 (47%)
Query: 3 LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRAC 55
LPAP + FG + + G VA LP G GKG PAP GTR C
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCC 179
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 32.3 bits (72), Expect = 0.29
Identities = 22/53 (41%), Positives = 25/53 (47%)
Query: 3 LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRAC 55
LPAP + FG + + G VA LP G GKG PAP GTR C
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAPPGTRCC 179
>gi|239756916 PREDICTED: hypothetical protein [Homo sapiens]
Length = 464
Score = 30.8 bits (68), Expect = 0.85
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 44 GAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGS 92
GAG + G A R P P GR GDRGR G+ CGS
Sbjct: 417 GAGRSAAGDEARARGPAGRAPSPSAALSGR------GDRGRTGATRCGS 459
>gi|239751407 PREDICTED: hypothetical protein XP_002347839 [Homo
sapiens]
Length = 490
Score = 30.8 bits (68), Expect = 0.85
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 44 GAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGS 92
GAG + G A R P P GR GDRGR G+ CGS
Sbjct: 443 GAGRSAAGDEARARGPAGRAPSPSAALSGR------GDRGRTGATRCGS 485
>gi|239745917 PREDICTED: hypothetical protein XP_002343616 [Homo
sapiens]
Length = 522
Score = 30.8 bits (68), Expect = 0.85
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 44 GAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGS 92
GAG + G A R P P GR GDRGR G+ CGS
Sbjct: 475 GAGRSAAGDEARARGPAGRAPSPSAALSGR------GDRGRTGATRCGS 517
>gi|115392133 collagen, type XXIV, alpha 1 [Homo sapiens]
Length = 1714
Score = 30.8 bits (68), Expect = 0.85
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 31 LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPR-KQGRHLYLEV-GDRGRAGSQ 88
LPG+ GG GL P P G + P P + GP+ +QG + G RG G+Q
Sbjct: 1316 LPGIRGGPGRTGLAGAPGPPGVKGSSGLPGSP-GIQGPKGEQGLPGQPGIQGKRGHRGAQ 1374
Query: 89 G----CGSHG 94
G CG G
Sbjct: 1375 GDQGPCGDPG 1384
Score = 29.3 bits (64), Expect = 2.5
Identities = 30/72 (41%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 22 LGGTVPVACLPGLVG--GCWG-KGLGAGPAPLGTRACWRAPRWPVPVAGPRKQG-RHLYL 77
+G T PV LPG VG G G KG P PLG + +P P P G L
Sbjct: 851 IGETGPVG-LPGEVGMTGSIGEKGERGSPGPLGPQGEKGVMGYPGPPGVPGPIGPLGLPG 909
Query: 78 EVGDRGRAGSQG 89
VG RG GSQG
Sbjct: 910 HVGARGPPGSQG 921
>gi|169210827 PREDICTED: hypothetical protein [Homo sapiens]
Length = 139
Score = 30.4 bits (67), Expect = 1.1
Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 6 PCRQSFGCRGCRHQKCLGGTVPVACLPG--LVGGCWGKGLGAGPAPLGTRACWRAPRWPV 63
P R G R K LG P LPG VGG WGK LG+ R V
Sbjct: 37 PGRDPSGLCYWRKGKWLGRVGPQPSLPGGLRVGGLWGKARAGPGESLGSSLVNR-----V 91
Query: 64 PVAGPRKQGRHLYL 77
P + R + RH+ L
Sbjct: 92 PSSQSRGKARHMPL 105
>gi|148536823 type IV alpha 6 collagen isoform A precursor [Homo
sapiens]
Length = 1691
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 31 LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPR-KQGRHLYLEV----GDRGRA 85
LPGL G +G G P G P+ +GP+ K+G + + GDRG +
Sbjct: 508 LPGLKGARGDRGSGGAQGPAGAPGLVG----PLGPSGPKGKKGEPILSTIQGMPGDRGDS 563
Query: 86 GSQG 89
GSQG
Sbjct: 564 GSQG 567
>gi|24308065 netrin 5 [Homo sapiens]
Length = 489
Score = 30.0 bits (66), Expect = 1.4
Identities = 24/85 (28%), Positives = 30/85 (35%), Gaps = 26/85 (30%)
Query: 30 CLPG----LVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRK-------------QG 72
C PG ++ W G GP R W P WP + GP +
Sbjct: 83 CTPGPPALILSAAWASG---GP----WRLLWHRPAWPGALGGPERVTFHSTPGPKATVAA 135
Query: 73 RHLYLEVGDRGRAGSQGCGSHGAVQ 97
HL +E G G+AG G G Q
Sbjct: 136 SHLRVEFG--GQAGLAAAGLRGRCQ 158
>gi|16357503 type IV alpha 6 collagen isoform B precursor [Homo
sapiens]
Length = 1690
Score = 30.0 bits (66), Expect = 1.4
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 9/64 (14%)
Query: 31 LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPR-KQGRHLYLEV----GDRGRA 85
LPGL G +G G P G P+ +GP+ K+G + + GDRG +
Sbjct: 507 LPGLKGARGDRGSGGAQGPAGAPGLVG----PLGPSGPKGKKGEPILSTIQGMPGDRGDS 562
Query: 86 GSQG 89
GSQG
Sbjct: 563 GSQG 566
>gi|13375913 transmembrane protein 149 [Homo sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 1.9
Identities = 37/122 (30%), Positives = 43/122 (35%), Gaps = 22/122 (18%)
Query: 19 QKCLGGTVPVACLPG---LVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRHL 75
+KC G C P L C G + PA G R WR PVP G H
Sbjct: 74 RKCSSGQ----CNPDGAELCSPCGGGAVTPTPAAGGGRTPWRCRERPVPAKG------HC 123
Query: 76 YLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCG------LPIGFQVLRQMLAGILQLV 129
L G+ G SQ + I WR V LP+ VL LA I L+
Sbjct: 124 PLTPGNPGAPSSQ---ERSSPASSIAWRTPEPVPQQAWPNFLPLVVLVLLLTLAVIAILL 180
Query: 130 LI 131
I
Sbjct: 181 FI 182
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 29.3 bits (64), Expect = 2.5
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 40 GKGLGAGPAPLGTRACWRAPRWPVPVAG-PRKQG-RHLYLEVGDRGRAGSQG 89
GKG+G GP P+G PR P AG P QG + E G+ G+ G G
Sbjct: 83 GKGVGLGPGPMGL----MGPRGPPGAAGAPGPQGFQGPAGEPGEPGQTGPAG 130
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 29.3 bits (64), Expect = 2.5
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 37 GCWGKGLGAGPAPLG----------------TRACWR-APRWP--VPVAGPRKQGRHLYL 77
GCWG A P P G + C + APR P GP R L
Sbjct: 160 GCWGSAPRALPCPFGRGQLPACCSPATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRLDK 219
Query: 78 EVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPI 113
R A S+ G A + W AGR C LP+
Sbjct: 220 LPSSRAPAPSKLTGGSLA---GLLWALAGRACSLPL 252
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 29.3 bits (64), Expect = 2.5
Identities = 29/96 (30%), Positives = 34/96 (35%), Gaps = 22/96 (22%)
Query: 37 GCWGKGLGAGPAPLG----------------TRACWR-APRWP--VPVAGPRKQGRHLYL 77
GCWG A P P G + C + APR P GP R L
Sbjct: 160 GCWGSAPRALPCPFGRGQLPACCSPATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRLDK 219
Query: 78 EVGDRGRAGSQGCGSHGAVQQRIGWRAAGRVCGLPI 113
R A S+ G A + W AGR C LP+
Sbjct: 220 LPSSRAPAPSKLTGGSLA---GLLWALAGRACSLPL 252
>gi|149944536 ichthyin protein [Homo sapiens]
Length = 466
Score = 29.3 bits (64), Expect = 2.5
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 46 GPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAA 105
G + GT W A P GP G GD+ R + GS GAV+ R+G A
Sbjct: 3 GDSSPGTLPLWDASL--SPPLGPDPGGFSRASHAGDKSRPPAPELGSPGAVRPRVGSCAP 60
Query: 106 G 106
G
Sbjct: 61 G 61
>gi|223972690 adenosine deaminase domain containing 2 isoform 2
[Homo sapiens]
Length = 583
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 40 GKGLGAGPAPLGTRACW--------RAPRWPVPVAG 67
G G GAG LG W +APR PVP AG
Sbjct: 68 GPGAGAGVGELGAARAWENLGEQMGKAPRVPVPPAG 103
>gi|223972688 adenosine deaminase domain containing 2 isoform 1
[Homo sapiens]
Length = 665
Score = 29.3 bits (64), Expect = 2.5
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 8/36 (22%)
Query: 40 GKGLGAGPAPLGTRACW--------RAPRWPVPVAG 67
G G GAG LG W +APR PVP AG
Sbjct: 68 GPGAGAGVGELGAARAWENLGEQMGKAPRVPVPPAG 103
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 29.3 bits (64), Expect = 2.5
Identities = 28/83 (33%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 31 LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQG- 89
LPGL G KG P PLG +P P GP G G +G G G
Sbjct: 948 LPGLEGREGAKGELGPPGPLGKEGPAGLRGFPGPKGGPGDPG-----PTGLKGDKGPPGP 1002
Query: 90 CGSHGAVQQRIGWRAAGRVCGLP 112
G++G+ +R AG + GLP
Sbjct: 1003 VGANGSPGERGPLGPAGGI-GLP 1024
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 29.3 bits (64), Expect = 2.5
Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 9/77 (11%)
Query: 24 GTVPVACLPGLVGGCWGKGLGA-GPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDR 82
G +P +P + G G L G A G CWR R K + G
Sbjct: 218 GPLPPPSMPAVAGAAGGLALLLLGVAGAGGAMCWRRRR--------AKPSESRHPGPGSF 269
Query: 83 GRAGSQGCGSHGAVQQR 99
GR GS G G G + R
Sbjct: 270 GRGGSLGLGGGGGMGPR 286
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 28.9 bits (63), Expect = 3.2
Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 4/62 (6%)
Query: 32 PGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRH----LYLEVGDRGRAGS 87
PG G +G P P G AP P PV P G+ +G GRAG
Sbjct: 1058 PGRDGAVGERGDRGDPGPAGLPGSQGAPGTPGPVGAPGDAGQRGDPGSRGPIGPPGRAGK 1117
Query: 88 QG 89
+G
Sbjct: 1118 RG 1119
>gi|182765442 homeobox A10 isoform a [Homo sapiens]
Length = 410
Score = 28.9 bits (63), Expect = 3.2
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 3 LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGA---GPAPL 50
LP +G + C LGG A PG GG G G GA GP+P+
Sbjct: 65 LPPAADLPYGLQSCGLFPTLGGKRNEAASPGSGGGGGGLGPGAHGYGPSPI 115
>gi|239757232 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 3.2
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 44 GAGPAPLGTRACWRAPRW----PVPVAGPRKQGRHLYL-EVGDRGRAGSQGCGSHGAVQQ 98
G GP P A A RW P P+ K+G L + RAG + GA +
Sbjct: 349 GLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE 408
Query: 99 RIGWRAAGRVCGL---PIGFQVLRQ 120
R+G R R GL P+G Q R+
Sbjct: 409 RLGPRGTRRARGLQLRPVGGQSRRE 433
>gi|239751740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 3.2
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 44 GAGPAPLGTRACWRAPRW----PVPVAGPRKQGRHLYL-EVGDRGRAGSQGCGSHGAVQQ 98
G GP P A A RW P P+ K+G L + RAG + GA +
Sbjct: 349 GLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE 408
Query: 99 RIGWRAAGRVCGL---PIGFQVLRQ 120
R+G R R GL P+G Q R+
Sbjct: 409 RLGPRGTRRARGLQLRPVGGQSRRE 433
>gi|239746241 PREDICTED: hypothetical protein XP_002343712 [Homo
sapiens]
Length = 461
Score = 28.9 bits (63), Expect = 3.2
Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 8/85 (9%)
Query: 44 GAGPAPLGTRACWRAPRW----PVPVAGPRKQGRHLYL-EVGDRGRAGSQGCGSHGAVQQ 98
G GP P A A RW P P+ K+G L + RAG + GA +
Sbjct: 349 GLGPVPPPLWAAVSASRWGGGGPQPLPQVSKEGSGLARPDPSCCVRAGLGAAKTPGAQGE 408
Query: 99 RIGWRAAGRVCGL---PIGFQVLRQ 120
R+G R R GL P+G Q R+
Sbjct: 409 RLGPRGTRRARGLQLRPVGGQSRRE 433
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 28.9 bits (63), Expect = 3.2
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 17/60 (28%)
Query: 31 LPGLVGGCWGKGLGAGPAPLGTRACWRAPRWPVPVAGPRKQGRHLYLEVGDRGRAGSQGC 90
LPG+ G GL P P G R P +P G+RG+ G++GC
Sbjct: 886 LPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFP-----------------GERGKPGAEGC 928
>gi|115511036 alpha-kinase 3 [Homo sapiens]
Length = 1907
Score = 28.9 bits (63), Expect = 3.2
Identities = 37/105 (35%), Positives = 40/105 (38%), Gaps = 23/105 (21%)
Query: 3 LPAPCRQSFGCRGCRHQKCLGGTVPVACLPGLVGGCWGKGLGAGPAPLGTRACWRAPRWP 62
LP P R CRHQ G G GLGAGP GT W AP P
Sbjct: 96 LPRPPGPLQTRRYCRHQ-----------------GRQGSGLGAGPG-AGT---W-APA-P 132
Query: 63 VPVAGPRKQGRHLYLEVGDRGRAGSQGCGSHGAVQQRIGWRAAGR 107
V+ PR GR E + + GA Q R G AAGR
Sbjct: 133 PGVSKPRCPGRARPGEGQQQVTTARPPAINRGARQPRAGAAAAGR 177
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.145 0.497
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,647,336
Number of Sequences: 37866
Number of extensions: 513758
Number of successful extensions: 1995
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 1956
Number of HSP's gapped (non-prelim): 83
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.