Guide to the Human Genome
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Name: LOC100290476 Sequence: fasta or formatted (459aa) NCBI GI: 239750388
Description:

PREDICTED: hypothetical protein XP_002347412

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         38           2
 C cysteine            3.5         16           2
 D aspartate           2.2         10           2
 E glutamate           5.7         26           2
 F phenylalanine       1.5          7           1
 G glycine            13.3         61           2
 H histidine           1.7          8           2
 I isoleucine          1.3          6           1
 K lysine              3.9         18           2
 L leucine             8.9         41           2
 M methionine          0.4          2           1
 N asparagine          0.7          3           1
 P proline             8.5         39           1
 Q glutamine           5.0         23           2
 R arginine           13.7         63           3
 S serine              9.6         44           3
 T threonine           4.4         20           1
 V valine              3.9         18           2
 W tryptophan          3.3         15           4
 Y tyrosine            0.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347412 
LOC100292296          1.000   PREDICTED: hypothetical protein 
LOC100292409          0.015   PREDICTED: hypothetical protein 
SAMD1                 0.015   sterile alpha motif domain containing 1 
LOC100292727          0.015   PREDICTED: hypothetical protein 
LOC100294010          0.015   PREDICTED: hypothetical protein 
LOC100291514          0.015   PREDICTED: hypothetical protein XP_002347163 
LOC100289311          0.015   PREDICTED: hypothetical protein XP_002343026 
APC2                  0.015   adenomatosis polyposis coli 2 
SRRM2                 0.015   splicing coactivator subunit SRm300 
SRRM1                 0.015   serine/arginine repetitive matrix 1 
LOC100287524          0.014   PREDICTED: hypothetical protein XP_002342307 
LOC728597             0.014   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.014   PREDICTED: doublecortin domain-containing protein E...
SALL3                 0.013   sal-like 3 
FAM48B1               0.013   hypothetical protein LOC100130302 
FUT4                  0.012   fucosyltransferase 4 
LOC100130128          0.012   PREDICTED: hypothetical protein 
LOC441617             0.012   PREDICTED: similar to hCG1820409 
LOC100130128          0.012   PREDICTED: hypothetical protein 
LOC441617             0.012   PREDICTED: similar to hCG1820409 
LOC100130128          0.012   PREDICTED: hypothetical protein 
BBC3                  0.012   BCL2 binding component 3 isoform 4 
LOC100292157          0.012   PREDICTED: hypothetical protein 
LOC100290023          0.012   PREDICTED: hypothetical protein XP_002348147 
LOC100290926          0.012   PREDICTED: hypothetical protein XP_002347568 
LOC727804             0.012   PREDICTED: hypothetical protein 
LOC100288995          0.012   PREDICTED: hypothetical protein XP_002343379 
FLJ37078              0.012   hypothetical protein LOC222183 
LOC729204             0.011   PREDICTED: similar to hCG2045644 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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