Guide to the Human Genome
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Name: NTN5 Sequence: fasta or formatted (489aa) NCBI GI: 24308065
Description:

netrin 5

Referenced in:

Netrins and Laminins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         53           3
 C cysteine            7.4         36           1
 D aspartate           2.9         14           1
 E glutamate           2.2         11           2
 F phenylalanine       2.0         10           1
 G glycine             9.6         47           2
 H histidine           4.5         22           2
 I isoleucine          1.0          5           1
 K lysine              0.8          4           1
 L leucine             9.4         46           5
 M methionine          0.8          4           1
 N asparagine          1.6          8           1
 P proline            10.4         51           2
 Q glutamine           5.7         28           2
 R arginine           11.2         55           2
 S serine              5.5         27           2
 T threonine           6.1         30           3
 V valine              3.9         19           1
 W tryptophan          2.2         11           1
 Y tyrosine            1.6          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   netrin 5 
NTN1                  0.346   netrin 1 
NTN3                  0.337   netrin 3 
LAMB2                 0.144   laminin, beta 2 precursor 
LAMC3                 0.133   laminin, gamma 3 precursor 
LAMB4                 0.132   laminin, beta 4 
NTN4                  0.130   netrin 4 
LAMB3                 0.125   laminin, beta 3 precursor 
LAMB3                 0.125   laminin, beta 3 precursor 
LAMB3                 0.125   laminin, beta 3 precursor 
LAMC1                 0.120   laminin, gamma 1 precursor 
LAMB1                 0.119   laminin, beta 1 precursor 
USH2A                 0.114   usherin isoform B 
USH2A                 0.114   usherin isoform A 
LAMA5                 0.112   laminin alpha 5 
LAMA3                 0.096   laminin alpha 3 subunit isoform 1 
LAMA3                 0.096   laminin alpha 3 subunit isoform 3 
NTNG1                 0.093   netrin G1 isoform 1 
LAMA1                 0.093   laminin, alpha 1 precursor 
NTNG2                 0.086   netrin G2 
LAMA2                 0.085   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.085   laminin alpha 2 subunit isoform a precursor 
HSPG2                 0.071   heparan sulfate proteoglycan 2 
LAMA3                 0.059   laminin alpha 3 subunit isoform 4 
LAMA3                 0.059   laminin alpha 3 subunit isoform 2 
LAMC2                 0.056   laminin, gamma 2 isoform b precursor 
LAMC2                 0.056   laminin, gamma 2 isoform a precursor 
LAMA4                 0.052   laminin, alpha 4 isoform 2 precursor 
LAMA4                 0.052   laminin, alpha 4 isoform 1 precursor 
LAMA4                 0.052   laminin, alpha 4 isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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