Guide to the Human Genome
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Name: NIPAL4 Sequence: fasta or formatted (466aa) NCBI GI: 149944536
Description:

ichthyin protein

Referenced in:

Additional Brain Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         38           2
 C cysteine            1.9          9           1
 D aspartate           3.0         14           1
 E glutamate           3.9         18           3
 F phenylalanine       5.6         26           2
 G glycine             7.7         36           2
 H histidine           1.9          9           1
 I isoleucine          7.7         36           3
 K lysine              3.6         17           3
 L leucine            12.0         56           3
 M methionine          2.4         11           1
 N asparagine          3.2         15           1
 P proline             7.1         33           3
 Q glutamine           1.5          7           1
 R arginine            3.2         15           1
 S serine             10.1         47           2
 T threonine           4.7         22           2
 V valine              8.6         40           3
 W tryptophan          1.1          5           2
 Y tyrosine            2.6         12           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ichthyin protein 
NIPA2                 0.434   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.434   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA2                 0.434   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPAL1                0.425   NIPA-like domain containing 1 
NIPA2                 0.394   non imprinted in Prader-Willi/Angelman syndrome 2 is...
NIPA1                 0.249   non-imprinted in Prader-Willi/Angelman syndrome 1 is...
NIPA1                 0.205   non-imprinted in Prader-Willi/Angelman syndrome 1 i...
NIPAL2                0.139   NIPA-like domain containing 2 
NIPAL3                0.111   NIPA-like domain containing 3 
SLC12A9               0.013   solute carrier family 12 (potassium/chloride transpo...
LHX5                  0.012   LIM homeobox protein 5 
ANK3                  0.011   ankyrin 3 isoform 1 
SLC39A11              0.011   solute carrier family 39, member 11 isoform 1 [Homo...
SLC39A11              0.011   solute carrier family 39, member 11 isoform 2 [Homo...
LOC729570             0.010   PREDICTED: hypothetical protein 
LOC729519             0.010   PREDICTED: hypothetical protein 
LOC729570             0.010   PREDICTED: hypothetical protein 
LOC729570             0.010   PREDICTED: hypothetical protein 
PPP1R16A              0.010   protein phosphatase 1, regulatory (inhibitor) subuni...
SLC38A4               0.009   solute carrier family 38, member 4 
SLC38A4               0.009   solute carrier family 38, member 4 
LOC729991-MEF2B       0.008   myocyte enhancer factor 2B isoform b 
MEF2B                 0.008   myocyte enhancer factor 2B isoform a 
LOC100289996          0.008   PREDICTED: hypothetical protein XP_002347212 
COL18A1               0.008   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
COL18A1               0.008   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.008   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
FZD8                  0.008   frizzled 8 
ACIN1                 0.007   apoptotic chromatin condensation inducer 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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