Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100132472 Sequence: fasta or formatted (139aa) NCBI GI: 169210827
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8          8           1
 C cysteine            3.6          5           2
 D aspartate           0.7          1           1
 E glutamate           3.6          5           1
 F phenylalanine       0.7          1           1
 G glycine            15.1         21           2
 H histidine           2.9          4           1
 I isoleucine          2.2          3           1
 K lysine              2.9          4           1
 L leucine            12.9         18           1
 M methionine          2.9          4           1
 N asparagine          0.7          1           1
 P proline            11.5         16           1
 Q glutamine           2.2          3           1
 R arginine            7.9         11           1
 S serine             12.9         18           2
 T threonine           2.2          3           1
 V valine              5.0          7           1
 W tryptophan          3.6          5           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC728991             0.026   PREDICTED: hypothetical protein 
DGKQ                  0.022   diacylglycerol kinase, theta 
LOC100292917          0.018   PREDICTED: hypothetical protein 
LOC100290270          0.018   PREDICTED: hypothetical protein XP_002347787 
LOC100287863          0.018   PREDICTED: hypothetical protein XP_002343554 
NKX1-1                0.015   PREDICTED: NK1 homeobox 1 
LOC100287920          0.015   PREDICTED: hypothetical protein XP_002344198 
LOC100287994          0.011   PREDICTED: hypothetical protein 
LOC100287994          0.011   PREDICTED: hypothetical protein XP_002342988 
BBC3                  0.011   BCL2 binding component 3 isoform 1 
SHROOM2               0.011   apical protein of Xenopus-like 
ZBP1                  0.011   Z-DNA binding protein 1 isoform c 
ZBP1                  0.011   Z-DNA binding protein 1 isoform b 
ZBP1                  0.011   Z-DNA binding protein 1 isoform a 
DACT2                 0.011   dapper, antagonist of beta-catenin, homolog 2 [Homo...
LOC100293662          0.011   PREDICTED: hypothetical protein 
LOC100289444          0.011   PREDICTED: hypothetical protein 
LOC100289444          0.011   PREDICTED: hypothetical protein XP_002342754 
LOC100289444          0.011   PREDICTED: hypothetical protein 
MLL2                  0.011   myeloid/lymphoid or mixed-lineage leukemia 2 
RRS1                  0.007   homolog of yeast ribosome biogenesis regulatory prot...
HOXD9                 0.007   homeobox D9 
LOC728431             0.007   PREDICTED: hypothetical protein 
LOC100288796          0.007   PREDICTED: hypothetical protein 
LOC100289917          0.007   PREDICTED: hypothetical protein XP_002347096 
LOC100288796          0.007   PREDICTED: hypothetical protein XP_002343710 
SYT3                  0.007   synaptotagmin III 
SYT3                  0.007   synaptotagmin III 
SYT3                  0.007   synaptotagmin III 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press