Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100129571 Sequence: fasta or formatted (346aa) NCBI GI: 239748572
Description:

PREDICTED: similar to hCG1646049

Not currently referenced in the text

Other entries for this name:
alt mRNA {346aa} PREDICTED: similar to hCG1646049
alt mRNA {346aa} PREDICTED: similar to hCG1646049
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.7         51           6
 C cysteine            2.6          9           2
 D aspartate           1.2          4           1
 E glutamate           4.3         15           2
 F phenylalanine       1.2          4           1
 G glycine            10.7         37           2
 H histidine           1.4          5           1
 I isoleucine          0.9          3           1
 K lysine              3.5         12           1
 L leucine             8.4         29           2
 M methionine          0.3          1           1
 N asparagine          0.6          2           1
 P proline            14.7         51           3
 Q glutamine           3.5         12           1
 R arginine           15.6         54           2
 S serine              8.1         28           3
 T threonine           5.8         20           2
 V valine              1.2          4           1
 W tryptophan          0.9          3           1
 Y tyrosine            0.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1646049 
LOC100129571          1.000   PREDICTED: similar to hCG1646049 
LOC100129571          1.000   PREDICTED: similar to hCG1646049 
TAF4                  0.055   TBP-associated factor 4 
WIPF3                 0.048   WAS/WASL interacting protein family, member 3 [Homo...
LOC643355             0.044   PREDICTED: hypothetical protein 
LOC283999             0.041   hypothetical protein LOC283999 
SRRM2                 0.041   splicing coactivator subunit SRm300 
LOC100290265          0.039   PREDICTED: hypothetical protein XP_002346787 
LOC100292184          0.039   PREDICTED: hypothetical protein 
B4GALNT4              0.039   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
APC2                  0.039   adenomatosis polyposis coli 2 
SNX26                 0.036   sorting nexin 26 
COL2A1                0.036   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.036   collagen, type II, alpha 1 isoform 2 precursor [Hom...
SAMD1                 0.036   sterile alpha motif domain containing 1 
LOC644246             0.035   PREDICTED: hypothetical protein LOC644246 
DACT3                 0.035   thymus expressed gene 3-like 
LOC100291634          0.033   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.033   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.033   PREDICTED: hypothetical protein 
ZNF469                0.033   zinc finger protein 469 
MEX3C                 0.033   ring finger and KH domain containing 2 
SRRM1                 0.033   serine/arginine repetitive matrix 1 
LOC100291096          0.032   PREDICTED: hypothetical protein XP_002346952 
LOC100291828          0.032   PREDICTED: hypothetical protein XP_002344932 
LOC100289716          0.032   PREDICTED: hypothetical protein XP_002346898 
LOC100287920          0.032   PREDICTED: hypothetical protein XP_002344198 
LOC100288926          0.032   PREDICTED: hypothetical protein XP_002343509 
LOC100289602          0.032   PREDICTED: hypothetical protein XP_002342755 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press