Guide to the Human Genome
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Name: LOC100288860 Sequence: fasta or formatted (461aa) NCBI GI: 239746241
Description:

PREDICTED: hypothetical protein XP_002343712

Not currently referenced in the text

Other entries for this name:
alt prot {461aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         52           3
 C cysteine            3.3         15           2
 D aspartate           2.4         11           1
 E glutamate           3.7         17           2
 F phenylalanine       1.7          8           1
 G glycine            15.4         71           4
 H histidine           0.9          4           1
 I isoleucine          0.9          4           1
 K lysine              2.8         13           2
 L leucine            11.9         55           2
 M methionine          0.4          2           1
 N asparagine          2.0          9           1
 P proline            11.3         52           3
 Q glutamine           3.9         18           2
 R arginine           10.2         47           2
 S serine              8.7         40           3
 T threonine           3.5         16           1
 V valine              3.9         18           1
 W tryptophan          1.5          7           1
 Y tyrosine            0.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343712 
LOC100292576          0.994   PREDICTED: hypothetical protein 
LOC100288860          0.994   PREDICTED: hypothetical protein 
COL5A2                0.026   alpha 2 type V collagen preproprotein 
FLJ37078              0.024   hypothetical protein LOC222183 
NACA                  0.024   nascent polypeptide-associated complex alpha subuni...
COL3A1                0.022   collagen type III alpha 1 preproprotein 
COL2A1                0.022   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.022   collagen, type II, alpha 1 isoform 2 precursor [Hom...
COL7A1                0.022   alpha 1 type VII collagen precursor 
LOC100130465          0.021   PREDICTED: hypothetical protein 
LOC100130465          0.021   PREDICTED: hypothetical protein 
LOC100130465          0.021   PREDICTED: hypothetical protein 
LOC100291756          0.019   PREDICTED: hypothetical protein XP_002345525 
LOC100288538          0.019   PREDICTED: hypothetical protein 
LOC100288538          0.019   PREDICTED: hypothetical protein XP_002343816 
COL1A2                0.018   alpha 2 type I collagen 
LOC100130128          0.018   PREDICTED: hypothetical protein 
LOC100130128          0.018   PREDICTED: hypothetical protein 
LOC100130128          0.018   PREDICTED: hypothetical protein 
ELN                   0.018   elastin isoform d precursor 
ELN                   0.017   elastin isoform c precursor 
ELN                   0.017   elastin isoform b precursor 
LOC728767             0.017   PREDICTED: hypothetical protein 
LOC728767             0.017   PREDICTED: hypothetical protein 
SEC24C                0.017   SEC24-related protein C 
SEC24C                0.017   SEC24-related protein C 
COL1A1                0.016   alpha 1 type I collagen preproprotein 
LOC100130897          0.016   PREDICTED: hypothetical protein 
LOC100130897          0.016   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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