Guide to the Human Genome
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Name: LOC100290270 Sequence: fasta or formatted (207aa) NCBI GI: 239751292
Description:

PREDICTED: hypothetical protein XP_002347787

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         16           2
 C cysteine            5.3         11           1
 D aspartate           2.9          6           2
 E glutamate           2.9          6           1
 F phenylalanine       2.4          5           1
 G glycine            16.9         35           2
 H histidine           2.4          5           1
 I isoleucine          2.9          6           1
 K lysine              2.9          6           1
 L leucine            11.1         23           1
 M methionine          1.9          4           1
 N asparagine          0.0          0           0
 P proline             7.2         15           1
 Q glutamine           6.8         14           2
 R arginine           10.1         21           1
 S serine              3.9          8           2
 T threonine           1.4          3           1
 V valine              6.8         14           1
 W tryptophan          2.9          6           1
 Y tyrosine            1.4          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347787 
LOC100292917          1.000   PREDICTED: hypothetical protein 
LOC100287863          1.000   PREDICTED: hypothetical protein XP_002343554 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100129571          0.017   PREDICTED: similar to hCG1646049 
LOC100293869          0.014   PREDICTED: hypothetical protein 
LOC100291040          0.014   PREDICTED: hypothetical protein XP_002347839 
LOC100289012          0.014   PREDICTED: hypothetical protein XP_002343616 
COL24A1               0.014   collagen, type XXIV, alpha 1 
LOC100132472          0.012   PREDICTED: hypothetical protein 
COL4A6                0.012   type IV alpha 6 collagen isoform A precursor 
NTN5                  0.012   netrin 5 
COL4A6                0.012   type IV alpha 6 collagen isoform B precursor 
TMEM149               0.012   transmembrane protein 149 
COL1A2                0.010   alpha 2 type I collagen 
LOC100292296          0.010   PREDICTED: hypothetical protein 
LOC100290476          0.010   PREDICTED: hypothetical protein XP_002347412 
NIPAL4                0.010   ichthyin protein 
ADAD2                 0.010   adenosine deaminase domain containing 2 isoform 2 [...
ADAD2                 0.010   adenosine deaminase domain containing 2 isoform 1 [...
COL5A3                0.010   collagen, type V, alpha 3 preproprotein 
EFNB3                 0.010   ephrin-B3 precursor 
COL5A2                0.010   alpha 2 type V collagen preproprotein 
HOXA10                0.010   homeobox A10 isoform a 
LOC100292576          0.010   PREDICTED: hypothetical protein 
LOC100288860          0.010   PREDICTED: hypothetical protein 
LOC100288860          0.010   PREDICTED: hypothetical protein XP_002343712 
COL4A4                0.010   alpha 4 type IV collagen precursor 
ALPK3                 0.010   alpha-kinase 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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