BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239756597 PREDICTED: hypothetical protein [Homo sapiens] (249 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239756597 PREDICTED: hypothetical protein [Homo sapiens] 511 e-145 gi|239751089 PREDICTED: hypothetical protein XP_002347701 [Homo ... 168 5e-42 gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo ... 168 5e-42 gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.009 gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.009 gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.009 gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 37 0.012 gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 37 0.012 gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 37 0.012 gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 37 0.021 gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 37 0.021 gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 35 0.047 gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061 gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 35 0.061 gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 35 0.061 gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061 gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 35 0.061 gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] 35 0.061 gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080 gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 35 0.080 gi|45827771 autoantigen RCD8 [Homo sapiens] 35 0.080 gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 33 0.18 gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 33 0.18 gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30 gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30 gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30 gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 33 0.30 gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40 gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40 gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 32 0.40 >gi|239756597 PREDICTED: hypothetical protein [Homo sapiens] Length = 249 Score = 511 bits (1315), Expect = e-145 Identities = 249/249 (100%), Positives = 249/249 (100%) Query: 1 MVQSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSR 60 MVQSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSR Sbjct: 1 MVQSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSR 60 Query: 61 QKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRR 120 QKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRR Sbjct: 61 QKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRR 120 Query: 121 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA 180 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA Sbjct: 121 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA 180 Query: 181 QARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCGVVVCC 240 QARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCGVVVCC Sbjct: 181 QARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCGVVVCC 240 Query: 241 EAHWAYGVA 249 EAHWAYGVA Sbjct: 241 EAHWAYGVA 249 >gi|239751089 PREDICTED: hypothetical protein XP_002347701 [Homo sapiens] Length = 81 Score = 168 bits (425), Expect = 5e-42 Identities = 81/81 (100%), Positives = 81/81 (100%) Query: 169 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 228 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL Sbjct: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60 Query: 229 ERAQGCGVVVCCEAHWAYGVA 249 ERAQGCGVVVCCEAHWAYGVA Sbjct: 61 ERAQGCGVVVCCEAHWAYGVA 81 >gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo sapiens] Length = 81 Score = 168 bits (425), Expect = 5e-42 Identities = 81/81 (100%), Positives = 81/81 (100%) Query: 169 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 228 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL Sbjct: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60 Query: 229 ERAQGCGVVVCCEAHWAYGVA 249 ERAQGCGVVVCCEAHWAYGVA Sbjct: 61 ERAQGCGVVVCCEAHWAYGVA 81 >gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo sapiens] Length = 1487 Score = 37.7 bits (86), Expect = 0.009 Identities = 53/182 (29%), Positives = 63/182 (34%), Gaps = 31/182 (17%) Query: 3 QSRPGSALGPGRCGLVKA----AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGT 58 + PG+ PGR G E+ A A A PG+PG AG T K RG +G Sbjct: 1037 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096 Query: 59 SRQKRLAG----WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVP 114 AG + P D AG+ G R G FT L+ P P P Sbjct: 1097 MGPSGPAGARGIQGPQGPRGDKGEAGEP---------GERGLKGHRGFT-GLQGLPGP-P 1145 Query: 115 SLSLRRGRGAAESAEGWRQERGAVCPG--------PSGWGRLRPRGRGREVAQSRHERRP 166 S +G G R G V P P G PRGR E + P Sbjct: 1146 GPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA----GP 1201 Query: 167 PG 168 PG Sbjct: 1202 PG 1203 Score = 30.0 bits (66), Expect = 2.0 Identities = 57/195 (29%), Positives = 69/195 (35%), Gaps = 24/195 (12%) Query: 3 QSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQK 62 Q PG+ PG G V S PG PG +G RG G + + Sbjct: 890 QGPPGATGFPGAAGRVGPPGSNGNPGP-----PGPPGPSGKDGPKGARGDSGPPGRAGEP 944 Query: 63 RLAG----WDEKSPVRDLVWAGQVLEDPTPP--LIGRRNTAGFVYFTLTLEARPAPVPSL 116 L G EK D +G E P P L G+R G L + P L Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGIVG-----LPGQRGERGFPGL 997 Query: 117 SLRRGRGAAESAEGWRQERGAVCPGPSG-WGRLRPRGR-GREVAQSRHERRPPGMRLARE 174 G + A G +RG PGP G G P G GRE S PPG A Sbjct: 998 PGPSGEPGKQGAPGASGDRGP--PGPVGPPGLTGPAGEPGRE--GSPGADGPPGRDGAAG 1053 Query: 175 LEGIGAQARAVRAEG 189 ++G + AV A G Sbjct: 1054 VKGDRGETGAVGAPG 1068 Score = 28.5 bits (62), Expect = 5.7 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 6 PGSALGPGRCGLVKA-AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRL 64 PG+ G G A A R PG+PG AGA+ P G +G++ + Sbjct: 368 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 427 Query: 65 AG 66 AG Sbjct: 428 AG 429 Score = 28.1 bits (61), Expect = 7.5 Identities = 40/147 (27%), Positives = 49/147 (33%), Gaps = 26/147 (17%) Query: 35 PGAPGQAGATCKPAGRGSDSGRGTSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRR 94 PG PG G P G G + G+DEK+ L V++ P P+ G R Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL----GVMQGPMGPM-GPR 209 Query: 95 NTAGFVYFTLTLEARPAPVP---SLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPR 151 G PA P G G RG PGP G +P Sbjct: 210 GPPG-----------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP--PGPPG----KPG 252 Query: 152 GRGREVAQSR-HERRPPGMRLARELEG 177 G + ER PPG + AR G Sbjct: 253 DDGEAGKPGKAGERGPPGPQGARGFPG 279 >gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo sapiens] Length = 1418 Score = 37.7 bits (86), Expect = 0.009 Identities = 53/182 (29%), Positives = 63/182 (34%), Gaps = 31/182 (17%) Query: 3 QSRPGSALGPGRCGLVKA----AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGT 58 + PG+ PGR G E+ A A A PG+PG AG T K RG +G Sbjct: 968 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027 Query: 59 SRQKRLAG----WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVP 114 AG + P D AG+ G R G FT L+ P P P Sbjct: 1028 MGPSGPAGARGIQGPQGPRGDKGEAGEP---------GERGLKGHRGFT-GLQGLPGP-P 1076 Query: 115 SLSLRRGRGAAESAEGWRQERGAVCPG--------PSGWGRLRPRGRGREVAQSRHERRP 166 S +G G R G V P P G PRGR E + P Sbjct: 1077 GPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA----GP 1132 Query: 167 PG 168 PG Sbjct: 1133 PG 1134 Score = 30.0 bits (66), Expect = 2.0 Identities = 57/195 (29%), Positives = 69/195 (35%), Gaps = 24/195 (12%) Query: 3 QSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQK 62 Q PG+ PG G V S PG PG +G RG G + + Sbjct: 821 QGPPGATGFPGAAGRVGPPGSNGNPGP-----PGPPGPSGKDGPKGARGDSGPPGRAGEP 875 Query: 63 RLAG----WDEKSPVRDLVWAGQVLEDPTPP--LIGRRNTAGFVYFTLTLEARPAPVPSL 116 L G EK D +G E P P L G+R G L + P L Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGIVG-----LPGQRGERGFPGL 928 Query: 117 SLRRGRGAAESAEGWRQERGAVCPGPSG-WGRLRPRGR-GREVAQSRHERRPPGMRLARE 174 G + A G +RG PGP G G P G GRE S PPG A Sbjct: 929 PGPSGEPGKQGAPGASGDRGP--PGPVGPPGLTGPAGEPGRE--GSPGADGPPGRDGAAG 984 Query: 175 LEGIGAQARAVRAEG 189 ++G + AV A G Sbjct: 985 VKGDRGETGAVGAPG 999 Score = 28.5 bits (62), Expect = 5.7 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Query: 6 PGSALGPGRCGLVKA-AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRL 64 PG+ G G A A R PG+PG AGA+ P G +G++ + Sbjct: 299 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358 Query: 65 AG 66 AG Sbjct: 359 AG 360 Score = 28.1 bits (61), Expect = 7.5 Identities = 40/147 (27%), Positives = 49/147 (33%), Gaps = 26/147 (17%) Query: 35 PGAPGQAGATCKPAGRGSDSGRGTSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRR 94 PG PG G P G G + G+DEK+ L V++ P P+ G R Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL----GVMQGPMGPM-GPR 140 Query: 95 NTAGFVYFTLTLEARPAPVP---SLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPR 151 G PA P G G RG PGP G +P Sbjct: 141 GPPG-----------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP--PGPPG----KPG 183 Query: 152 GRGREVAQSR-HERRPPGMRLARELEG 177 G + ER PPG + AR G Sbjct: 184 DDGEAGKPGKAGERGPPGPQGARGFPG 210 >gi|158854042 hypothetical protein LOC222183 [Homo sapiens] Length = 653 Score = 37.7 bits (86), Expect = 0.009 Identities = 53/189 (28%), Positives = 65/189 (34%), Gaps = 34/189 (17%) Query: 5 RPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRL 64 RPGSA P ++ S ++A P P + + P S GRG R Sbjct: 327 RPGSAHSPPD---KPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG----RA 379 Query: 65 AGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVP----SLSLRR 120 AG + R P GRR RP P P S SL R Sbjct: 380 AGGAGRRRRRRRRRRRSRSSASAPRRRGRR--------------RPRPAPPRGSSRSLSR 425 Query: 121 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA 180 R +++S G RGA PGP G G+ R + RPP R A GA Sbjct: 426 ARSSSDSGSG----RGAPGPGPEPGSERGHGGHGK-----RAKERPPRARPASTSPSPGA 476 Query: 181 QARAVRAEG 189 R EG Sbjct: 477 HGRRGGPEG 485 >gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sapiens] Length = 228 Score = 37.4 bits (85), Expect = 0.012 Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%) Query: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123 LAGWD R L A + DP PP + + PAP+PS R R Sbjct: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57 Query: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182 G R A+ P+ R P G GR + ++ HER PG+ E + A Sbjct: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112 Query: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224 R +G+ +V AE + +Q A RR V +G G Sbjct: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152 >gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapiens] Length = 228 Score = 37.4 bits (85), Expect = 0.012 Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%) Query: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123 LAGWD R L A + DP PP + + PAP+PS R R Sbjct: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57 Query: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182 G R A+ P+ R P G GR + ++ HER PG+ E + A Sbjct: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112 Query: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224 R +G+ +V AE + +Q A RR V +G G Sbjct: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152 >gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapiens] Length = 228 Score = 37.4 bits (85), Expect = 0.012 Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%) Query: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123 LAGWD R L A + DP PP + + PAP+PS R R Sbjct: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57 Query: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182 G R A+ P+ R P G GR + ++ HER PG+ E + A Sbjct: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112 Query: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224 R +G+ +V AE + +Q A RR V +G G Sbjct: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152 >gi|7710145 methyl-CpG binding domain protein 2 testis-specific isoform [Homo sapiens] Length = 302 Score = 36.6 bits (83), Expect = 0.021 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 110 PAPVPSLSLRRGRGAAESAEGWRQ--ERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPP 167 P+PV + RG W+Q G VC G GR R RGRGR + R RPP Sbjct: 43 PSPVSGVRREGARGGGRGRGRWKQAGRGGGVC----GRGRGRGRGRGRGRGRGRGRGRPP 98 >gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo sapiens] Length = 411 Score = 36.6 bits (83), Expect = 0.021 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 110 PAPVPSLSLRRGRGAAESAEGWRQ--ERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPP 167 P+PV + RG W+Q G VC G GR R RGRGR + R RPP Sbjct: 43 PSPVSGVRREGARGGGRGRGRWKQAGRGGGVC----GRGRGRGRGRGRGRGRGRGRGRPP 98 >gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] Length = 193 Score = 35.4 bits (80), Expect = 0.047 Identities = 44/129 (34%), Positives = 51/129 (39%), Gaps = 29/129 (22%) Query: 119 RRGRGAAESA------EGWRQERGAVCPGPSGW--GR-----LRPRGRGR--------EV 157 RR GAA S +GW ++ G PGP GW GR L PR + Sbjct: 59 RRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQT 118 Query: 158 AQSRHERRPPGMRLA--RELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQ 215 A R RR P R A RE G G A A G AE +HL Q R RR+ Sbjct: 119 AVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGG-----EWAAEPLHLPQ-RGRRRRFTC 172 Query: 216 RGVQLGRSG 224 R + R G Sbjct: 173 RSGRPPRRG 181 >gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] Length = 257 Score = 35.0 bits (79), Expect = 0.061 Identities = 43/122 (35%), Positives = 49/122 (40%), Gaps = 29/122 (23%) Query: 119 RRGRGAAESA------EGWRQERGAVCPGPSGW--GR-----LRPRGRGR--------EV 157 RR GAA S +GW ++ G PGP GW GR L PR + Sbjct: 59 RRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQT 118 Query: 158 AQSRHERRPPGMRLA--RELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ-GRAARRQLL 214 A R RR P R A RE G G A A G AE +HL Q GR A L Sbjct: 119 AVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGG-----EWAAEPLHLPQRGRPAPLHLP 173 Query: 215 QR 216 +R Sbjct: 174 ER 175 >gi|239756681 PREDICTED: basic helix-loop-helix family, member a9 [Homo sapiens] Length = 203 Score = 35.0 bits (79), Expect = 0.061 Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 24/135 (17%) Query: 114 PSLSLRRGRGAAESAEGWRQERGAVCPGPSG-------WGRLRPRGRGREVAQSRHER-- 164 P L L +GA +SAE + G CP P G G RG E A R R Sbjct: 6 PGLGLTARKGAEDSAE----DLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPV 61 Query: 165 RPPGMRLAREL----------EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 214 R R+A + E A RA+R + R++ A T+ A R A L+ Sbjct: 62 RSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA-TLRRAIHRIAALSLV 120 Query: 215 QRGVQLGRSGCAHLE 229 R R C HLE Sbjct: 121 LRASPAPRGPCGHLE 135 >gi|239751178 PREDICTED: basic helix-loop-helix family, member a9 [Homo sapiens] Length = 235 Score = 35.0 bits (79), Expect = 0.061 Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 24/135 (17%) Query: 114 PSLSLRRGRGAAESAEGWRQERGAVCPGPSG-------WGRLRPRGRGREVAQSRHER-- 164 P L L +GA +SAE + G CP P G G RG E A R R Sbjct: 6 PGLGLTARKGAEDSAE----DLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPV 61 Query: 165 RPPGMRLAREL----------EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 214 R R+A + E A RA+R + R++ A T+ A R A L+ Sbjct: 62 RSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA-TLRRAIHRIAALSLV 120 Query: 215 QRGVQLGRSGCAHLE 229 R R C HLE Sbjct: 121 LRASPAPRGPCGHLE 135 >gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] Length = 257 Score = 35.0 bits (79), Expect = 0.061 Identities = 43/122 (35%), Positives = 49/122 (40%), Gaps = 29/122 (23%) Query: 119 RRGRGAAESA------EGWRQERGAVCPGPSGW--GR-----LRPRGRGR--------EV 157 RR GAA S +GW ++ G PGP GW GR L PR + Sbjct: 59 RRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQT 118 Query: 158 AQSRHERRPPGMRLA--RELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ-GRAARRQLL 214 A R RR P R A RE G G A A G AE +HL Q GR A L Sbjct: 119 AVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGG-----EWAAEPLHLPQRGRPAPLHLP 173 Query: 215 QR 216 +R Sbjct: 174 ER 175 >gi|239745666 PREDICTED: basic helix-loop-helix family, member a9 [Homo sapiens] Length = 235 Score = 35.0 bits (79), Expect = 0.061 Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 24/135 (17%) Query: 114 PSLSLRRGRGAAESAEGWRQERGAVCPGPSG-------WGRLRPRGRGREVAQSRHER-- 164 P L L +GA +SAE + G CP P G G RG E A R R Sbjct: 6 PGLGLTARKGAEDSAE----DLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPV 61 Query: 165 RPPGMRLAREL----------EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 214 R R+A + E A RA+R + R++ A T+ A R A L+ Sbjct: 62 RSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA-TLRRAIHRIAALSLV 120 Query: 215 QRGVQLGRSGCAHLE 229 R R C HLE Sbjct: 121 LRASPAPRGPCGHLE 135 >gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] Length = 638 Score = 35.0 bits (79), Expect = 0.061 Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 107 EARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPG--PSGWGRLRPRGRGREVAQSRHER 164 +ARP P SL GRGA S EGW CPG SG RP R + R Sbjct: 64 QARPLGPPGTSLL-GRGARRSGEGW-------CPGAFESGARAARPPSRVEPRLATAASR 115 Query: 165 RPPGMRLARELEGIGAQARA 184 G+ A G G AR+ Sbjct: 116 EGAGLPRAEVAAGSGRGARS 135 >gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] Length = 352 Score = 34.7 bits (78), Expect = 0.080 Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 20/130 (15%) Query: 39 GQAGATCKPAGRGSDSGRGTSRQKRLA--GWDEKSPVRDLVWAGQVLEDPTPPLIGRRNT 96 G A C+PA + T+R R + G K+ + PTPP + R Sbjct: 2 GAATGGCQPAKPNRQASTDTNRSTRASSVGCLSKAAL------------PTPPQVHSRKP 49 Query: 97 AGFVYFTL---TLEARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPRGR 153 + F TL R AP+P L RG A + W + ++C P PR R Sbjct: 50 GPALRFPSGHHTLRERLAPIP---LGRGCPPALVSPAWGLQAHSLCGSPERHMAGIPRER 106 Query: 154 GREVAQSRHE 163 G++ + +H+ Sbjct: 107 GKKEQKVQHD 116 >gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] Length = 2944 Score = 34.7 bits (78), Expect = 0.080 Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 26/150 (17%) Query: 3 QSRPGSALGPGRCGLVKAAESAAFAARSALL-RPGAPGQAGATCKPAGRGSDSGRGTSRQ 61 Q PGSA G G A R+ PGAPG G+ P RG RG Sbjct: 1286 QGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGP 1345 Query: 62 KRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRG 121 K G +P GQV+ P L GR+ G P P L Sbjct: 1346 KGEPG----AP-------GQVIGGEGPGLPGRKGDPG-------PSGPPGPRGPLGDPGP 1387 Query: 122 RG-------AAESAEGWRQERGAVCPGPSG 144 RG A + +G R ERG PG G Sbjct: 1388 RGPPGLPGTAMKGDKGDRGERGPPGPGEGG 1417 Score = 29.3 bits (64), Expect = 3.3 Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 15/56 (26%) Query: 6 PGSALG----PGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRG 57 P A+G PG GLV S PG PGQ G T KP G D G Sbjct: 2222 PTGAVGLPGPPGPSGLVGPQGS-----------PGLPGQVGETGKPGAPGRDGASG 2266 Score = 27.7 bits (60), Expect = 9.7 Identities = 46/168 (27%), Positives = 54/168 (32%), Gaps = 14/168 (8%) Query: 6 PGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRLA 65 PG PG G V S PG PGQ G+ + RG G + Sbjct: 1426 PGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFP 1485 Query: 66 GWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRGAA 125 G L AG+ E P G R G P P + R+G Sbjct: 1486 G--------PLGEAGEKGERGPPGPAGSRGLPGVA--GRPGAKGPEGPPGPTGRQGEKGE 1535 Query: 126 ESAEGWRQERGAVCPGPSG-WGRLRPRG-RGREVAQSRHERRPPGMRL 171 G G GP G G + P G RG Q ER PPG+ L Sbjct: 1536 PGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQG--ERGPPGLVL 1581 >gi|45827771 autoantigen RCD8 [Homo sapiens] Length = 1401 Score = 34.7 bits (78), Expect = 0.080 Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 12/130 (9%) Query: 110 PAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGM 169 P P L + + ++A G R V P W L + + RE+A+ RH + Sbjct: 915 PRTSPKLKRKSKKDDGDAAMGSRLTEHQVAEPPEDWPALIWQQQ-RELAELRHSQEELLQ 973 Query: 170 RLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL---QRGVQLGRSGCA 226 RL +LEG+ + V V ET H + R R L QRG QL Sbjct: 974 RLCTQLEGLQST--------VTGHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQ 1025 Query: 227 HLERAQGCGV 236 L +A V Sbjct: 1026 QLSQALSSAV 1035 >gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo sapiens] Length = 921 Score = 33.5 bits (75), Expect = 0.18 Identities = 57/223 (25%), Positives = 74/223 (33%), Gaps = 33/223 (14%) Query: 3 QSRPGSALGPGRCGL--------VKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDS 54 + PG PG GL + A+ A + + PG PGQ G + KP +G Sbjct: 555 KGEPGKPGPPGDAGLQGLPGVPGIPGAKGVA-GEKGSTGAPGKPGQMGNSGKPGQQGPPG 613 Query: 55 GRGTSRQKRLAG-WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPV 113 G + L G E PV G++ +P L G G P Sbjct: 614 EVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPG 673 Query: 114 PSLSLRRGRGAAESAEGWRQERGAV----CPGPSGW-------GRLRPRGRGREVAQSRH 162 P +G A EG ERG + PGP G G P G R + Sbjct: 674 P-----KGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEG-SRGLPGVEG 727 Query: 163 ERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ 205 R PPG R G+ + A GVQ H+ Q Sbjct: 728 PRGPPGPR------GVQGEQGATGLPGVQGPPGRAPTDQHIKQ 764 >gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo sapiens] Length = 678 Score = 33.5 bits (75), Expect = 0.18 Identities = 57/223 (25%), Positives = 74/223 (33%), Gaps = 33/223 (14%) Query: 3 QSRPGSALGPGRCGL--------VKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDS 54 + PG PG GL + A+ A + + PG PGQ G + KP +G Sbjct: 312 KGEPGKPGPPGDAGLQGLPGVPGIPGAKGVA-GEKGSTGAPGKPGQMGNSGKPGQQGPPG 370 Query: 55 GRGTSRQKRLAG-WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPV 113 G + L G E PV G++ +P L G G P Sbjct: 371 EVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPG 430 Query: 114 PSLSLRRGRGAAESAEGWRQERGAV----CPGPSGW-------GRLRPRGRGREVAQSRH 162 P +G A EG ERG + PGP G G P G R + Sbjct: 431 P-----KGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEG-SRGLPGVEG 484 Query: 163 ERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ 205 R PPG R G+ + A GVQ H+ Q Sbjct: 485 PRGPPGPR------GVQGEQGATGLPGVQGPPGRAPTDQHIKQ 521 >gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] Length = 202 Score = 32.7 bits (73), Expect = 0.30 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 8/94 (8%) Query: 144 GWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHL 203 GWG +G R + +RPPG R AQARA R G + R A A Sbjct: 24 GWGGEEVQGLARAGLAAGKGQRPPGPGRVR-----AAQARARRGGGARERPAEGARGPRA 78 Query: 204 AQGRAAR---RQLLQRGVQLGRSGCAHLERAQGC 234 A+G A QL R+ L R C Sbjct: 79 ARGGARAGPDAQLRAARTHRARAQTPQLRREAAC 112 >gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] Length = 370 Score = 32.7 bits (73), Expect = 0.30 Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 15/105 (14%) Query: 85 DPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSG 144 DP P + GR + + A PAPVPS + R GA RGA P Sbjct: 271 DPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGA---------RRGARELAPRA 321 Query: 145 WGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGAQARAVRAEG 189 R +P GR ++R E+R RE GA R A G Sbjct: 322 GRRRQPSGRTSWRRRARREQRD------REPAVCGAWPRGSHAAG 360 >gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] Length = 202 Score = 32.7 bits (73), Expect = 0.30 Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 8/94 (8%) Query: 144 GWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHL 203 GWG +G R + +RPPG R AQARA R G + R A A Sbjct: 24 GWGGEEVQGLARAGLATGKGQRPPGPGRVR-----AAQARARRGGGARERPAEGARGPRA 78 Query: 204 AQGRAAR---RQLLQRGVQLGRSGCAHLERAQGC 234 A+G A QL R+ L R C Sbjct: 79 ARGGARAGPDAQLRAARTHRARAQTPQLRREAAC 112 >gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo sapiens] Length = 329 Score = 32.7 bits (73), Expect = 0.30 Identities = 45/154 (29%), Positives = 57/154 (37%), Gaps = 21/154 (13%) Query: 3 QSRPGSA-LGPGR---CGLVKAAESAAFAARSA-LLRPGAPGQAGATCKPAGRGSDSGRG 57 ++RP A L P R GL A A +S PG PG AG AG G G Sbjct: 175 ETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAG-GLRKRPG 233 Query: 58 TSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEA-----RPAP 112 +R + G P R L L + P L R T A RP P Sbjct: 234 ITRTE---GNPSPRPPRRLT-----LPEDHPRLANARRRRKRALATRVRPAPQTSGRPGP 285 Query: 113 V--PSLSLRRGRGAAESAEGWRQERGAVCPGPSG 144 + P++S+ + +GW Q RG GP G Sbjct: 286 LGGPAISVVLSPASQAPEKGWSQSRGGARLGPEG 319 >gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] Length = 312 Score = 32.3 bits (72), Expect = 0.40 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 4 SRPGSALGPGRCGLVKAAESAAFAARSALLRP------GAPGQAGATCKPAGRGSDSGRG 57 +RP GR G +A + R L P PG+ G +C PAG + G+ Sbjct: 117 ARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAA-GGKL 175 Query: 58 TSRQKRLAGWD-EKSPVRDLVWAGQVLEDPTPPLIGR 93 +R RL VW+ P PPL+GR Sbjct: 176 RARLLRLPDCSLALGKASYSVWS--PTHFPVPPLLGR 210 >gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] Length = 265 Score = 32.3 bits (72), Expect = 0.40 Identities = 51/200 (25%), Positives = 70/200 (35%), Gaps = 44/200 (22%) Query: 3 QSRPGSALGPGRCGLVKAAE-SAAFAARSALLRPGAPGQAGATCKPAGRGSDSG----RG 57 Q R LGP R + AA S R G G G PAG+GSD+G G Sbjct: 80 QRRSKEGLGPFRAPRIFAARPSQPLGQRRGGGAKGQRGGGGPPNPPAGQGSDTGGTKTPG 139 Query: 58 TSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGF----VYFTLTLEARPAPV 113 T+ A SP PL+G + G+ V L+L R + Sbjct: 140 TTTAAAAAATGSASP-------------EARPLVGSCRSPGYGPSLVSADLSLPPRRLAI 186 Query: 114 PSLSLRRGRGAAESAEGW-----------------RQERGAVCPGPSGWGRLRPRGRGRE 156 P + G G+A S G ++ G++ PG G P+ +G Sbjct: 187 PR---QLGSGSAPSRIGCASGSRASVVSSLKNPIRKEGFGSLVPGSKEAGAGPPKHKGPP 243 Query: 157 VAQSRHERRPPGMRLARELE 176 A H R P + A + E Sbjct: 244 TAY--HARLPLAVETATDKE 261 >gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo sapiens] Length = 659 Score = 32.3 bits (72), Expect = 0.40 Identities = 37/141 (26%), Positives = 49/141 (34%), Gaps = 13/141 (9%) Query: 35 PGAPGQAGATCKPAGRGSDSGRGTSRQKRLAGWDEKSPVRDL-----VWAGQVLEDPTPP 89 P APG R S+S + R GW S R A Sbjct: 15 PSAPGIGQV------RNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAADSGRRRASG 68 Query: 90 LIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLR 149 +GR + V +T + EA P + + RG G EG+R G + + W R Sbjct: 69 RLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKTWASWSPAR 128 Query: 150 PRGRGREVAQ--SRHERRPPG 168 PR G A +R RP G Sbjct: 129 PRPDGSIKASLPARLSPRPLG 149 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.135 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 11,279,687 Number of Sequences: 37866 Number of extensions: 594261 Number of successful extensions: 3583 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 171 Number of HSP's that attempted gapping in prelim test: 3187 Number of HSP's gapped (non-prelim): 539 length of query: 249 length of database: 18,247,518 effective HSP length: 100 effective length of query: 149 effective length of database: 14,460,918 effective search space: 2154676782 effective search space used: 2154676782 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.