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Search of human proteins with 239756597
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756597 PREDICTED: hypothetical protein [Homo sapiens]
(249 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756597 PREDICTED: hypothetical protein [Homo sapiens] 511 e-145
gi|239751089 PREDICTED: hypothetical protein XP_002347701 [Homo ... 168 5e-42
gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo ... 168 5e-42
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 38 0.009
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 38 0.009
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 38 0.009
gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo sap... 37 0.012
gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 37 0.012
gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo sapi... 37 0.012
gi|7710145 methyl-CpG binding domain protein 2 testis-specific i... 37 0.021
gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo s... 37 0.021
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens] 35 0.047
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061
gi|239756681 PREDICTED: basic helix-loop-helix family, member a9... 35 0.061
gi|239751178 PREDICTED: basic helix-loop-helix family, member a9... 35 0.061
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061
gi|239745666 PREDICTED: basic helix-loop-helix family, member a9... 35 0.061
gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens] 35 0.061
gi|239753568 PREDICTED: hypothetical protein [Homo sapiens] 35 0.080
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 35 0.080
gi|45827771 autoantigen RCD8 [Homo sapiens] 35 0.080
gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo s... 33 0.18
gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo s... 33 0.18
gi|239755739 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239752764 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239750250 PREDICTED: hypothetical protein [Homo sapiens] 33 0.30
gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo ... 33 0.30
gi|169211520 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|239754838 PREDICTED: hypothetical protein [Homo sapiens] 32 0.40
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 32 0.40
>gi|239756597 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 511 bits (1315), Expect = e-145
Identities = 249/249 (100%), Positives = 249/249 (100%)
Query: 1 MVQSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSR 60
MVQSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSR
Sbjct: 1 MVQSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSR 60
Query: 61 QKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRR 120
QKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRR
Sbjct: 61 QKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRR 120
Query: 121 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA 180
GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA
Sbjct: 121 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA 180
Query: 181 QARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCGVVVCC 240
QARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCGVVVCC
Sbjct: 181 QARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHLERAQGCGVVVCC 240
Query: 241 EAHWAYGVA 249
EAHWAYGVA
Sbjct: 241 EAHWAYGVA 249
>gi|239751089 PREDICTED: hypothetical protein XP_002347701 [Homo
sapiens]
Length = 81
Score = 168 bits (425), Expect = 5e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 169 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 228
MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL
Sbjct: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
Query: 229 ERAQGCGVVVCCEAHWAYGVA 249
ERAQGCGVVVCCEAHWAYGVA
Sbjct: 61 ERAQGCGVVVCCEAHWAYGVA 81
>gi|239745578 PREDICTED: hypothetical protein XP_002344151 [Homo
sapiens]
Length = 81
Score = 168 bits (425), Expect = 5e-42
Identities = 81/81 (100%), Positives = 81/81 (100%)
Query: 169 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 228
MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL
Sbjct: 1 MRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSGCAHL 60
Query: 229 ERAQGCGVVVCCEAHWAYGVA 249
ERAQGCGVVVCCEAHWAYGVA
Sbjct: 61 ERAQGCGVVVCCEAHWAYGVA 81
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 37.7 bits (86), Expect = 0.009
Identities = 53/182 (29%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 3 QSRPGSALGPGRCGLVKA----AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGT 58
+ PG+ PGR G E+ A A A PG+PG AG T K RG +G
Sbjct: 1037 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096
Query: 59 SRQKRLAG----WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVP 114
AG + P D AG+ G R G FT L+ P P P
Sbjct: 1097 MGPSGPAGARGIQGPQGPRGDKGEAGEP---------GERGLKGHRGFT-GLQGLPGP-P 1145
Query: 115 SLSLRRGRGAAESAEGWRQERGAVCPG--------PSGWGRLRPRGRGREVAQSRHERRP 166
S +G G R G V P P G PRGR E + P
Sbjct: 1146 GPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA----GP 1201
Query: 167 PG 168
PG
Sbjct: 1202 PG 1203
Score = 30.0 bits (66), Expect = 2.0
Identities = 57/195 (29%), Positives = 69/195 (35%), Gaps = 24/195 (12%)
Query: 3 QSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQK 62
Q PG+ PG G V S PG PG +G RG G + +
Sbjct: 890 QGPPGATGFPGAAGRVGPPGSNGNPGP-----PGPPGPSGKDGPKGARGDSGPPGRAGEP 944
Query: 63 RLAG----WDEKSPVRDLVWAGQVLEDPTPP--LIGRRNTAGFVYFTLTLEARPAPVPSL 116
L G EK D +G E P P L G+R G L + P L
Sbjct: 945 GLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGIVG-----LPGQRGERGFPGL 997
Query: 117 SLRRGRGAAESAEGWRQERGAVCPGPSG-WGRLRPRGR-GREVAQSRHERRPPGMRLARE 174
G + A G +RG PGP G G P G GRE S PPG A
Sbjct: 998 PGPSGEPGKQGAPGASGDRGP--PGPVGPPGLTGPAGEPGRE--GSPGADGPPGRDGAAG 1053
Query: 175 LEGIGAQARAVRAEG 189
++G + AV A G
Sbjct: 1054 VKGDRGETGAVGAPG 1068
Score = 28.5 bits (62), Expect = 5.7
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 6 PGSALGPGRCGLVKA-AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRL 64
PG+ G G A A R PG+PG AGA+ P G +G++ +
Sbjct: 368 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 427
Query: 65 AG 66
AG
Sbjct: 428 AG 429
Score = 28.1 bits (61), Expect = 7.5
Identities = 40/147 (27%), Positives = 49/147 (33%), Gaps = 26/147 (17%)
Query: 35 PGAPGQAGATCKPAGRGSDSGRGTSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRR 94
PG PG G P G G + G+DEK+ L V++ P P+ G R
Sbjct: 155 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL----GVMQGPMGPM-GPR 209
Query: 95 NTAGFVYFTLTLEARPAPVP---SLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPR 151
G PA P G G RG PGP G +P
Sbjct: 210 GPPG-----------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP--PGPPG----KPG 252
Query: 152 GRGREVAQSR-HERRPPGMRLARELEG 177
G + ER PPG + AR G
Sbjct: 253 DDGEAGKPGKAGERGPPGPQGARGFPG 279
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 37.7 bits (86), Expect = 0.009
Identities = 53/182 (29%), Positives = 63/182 (34%), Gaps = 31/182 (17%)
Query: 3 QSRPGSALGPGRCGLVKA----AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGT 58
+ PG+ PGR G E+ A A A PG+PG AG T K RG +G
Sbjct: 968 EGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027
Query: 59 SRQKRLAG----WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVP 114
AG + P D AG+ G R G FT L+ P P P
Sbjct: 1028 MGPSGPAGARGIQGPQGPRGDKGEAGEP---------GERGLKGHRGFT-GLQGLPGP-P 1076
Query: 115 SLSLRRGRGAAESAEGWRQERGAVCPG--------PSGWGRLRPRGRGREVAQSRHERRP 166
S +G G R G V P P G PRGR E + P
Sbjct: 1077 GPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPIGPPGPRGRSGETGPA----GP 1132
Query: 167 PG 168
PG
Sbjct: 1133 PG 1134
Score = 30.0 bits (66), Expect = 2.0
Identities = 57/195 (29%), Positives = 69/195 (35%), Gaps = 24/195 (12%)
Query: 3 QSRPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQK 62
Q PG+ PG G V S PG PG +G RG G + +
Sbjct: 821 QGPPGATGFPGAAGRVGPPGSNGNPGP-----PGPPGPSGKDGPKGARGDSGPPGRAGEP 875
Query: 63 RLAG----WDEKSPVRDLVWAGQVLEDPTPP--LIGRRNTAGFVYFTLTLEARPAPVPSL 116
L G EK D +G E P P L G+R G L + P L
Sbjct: 876 GLQGPAGPPGEKGEPGDDGPSG--AEGPPGPQGLAGQRGIVG-----LPGQRGERGFPGL 928
Query: 117 SLRRGRGAAESAEGWRQERGAVCPGPSG-WGRLRPRGR-GREVAQSRHERRPPGMRLARE 174
G + A G +RG PGP G G P G GRE S PPG A
Sbjct: 929 PGPSGEPGKQGAPGASGDRGP--PGPVGPPGLTGPAGEPGRE--GSPGADGPPGRDGAAG 984
Query: 175 LEGIGAQARAVRAEG 189
++G + AV A G
Sbjct: 985 VKGDRGETGAVGAPG 999
Score = 28.5 bits (62), Expect = 5.7
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
Query: 6 PGSALGPGRCGLVKA-AESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRL 64
PG+ G G A A R PG+PG AGA+ P G +G++ +
Sbjct: 299 PGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI 358
Query: 65 AG 66
AG
Sbjct: 359 AG 360
Score = 28.1 bits (61), Expect = 7.5
Identities = 40/147 (27%), Positives = 49/147 (33%), Gaps = 26/147 (17%)
Query: 35 PGAPGQAGATCKPAGRGSDSGRGTSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRR 94
PG PG G P G G + G+DEK+ L V++ P P+ G R
Sbjct: 86 PGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQL----GVMQGPMGPM-GPR 140
Query: 95 NTAGFVYFTLTLEARPAPVP---SLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPR 151
G PA P G G RG PGP G +P
Sbjct: 141 GPPG-----------PAGAPGPQGFQGNPGEPGEPGVSGPMGPRGP--PGPPG----KPG 183
Query: 152 GRGREVAQSR-HERRPPGMRLARELEG 177
G + ER PPG + AR G
Sbjct: 184 DDGEAGKPGKAGERGPPGPQGARGFPG 210
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.7 bits (86), Expect = 0.009
Identities = 53/189 (28%), Positives = 65/189 (34%), Gaps = 34/189 (17%)
Query: 5 RPGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRL 64
RPGSA P ++ S ++A P P + + P S GRG R
Sbjct: 327 RPGSAHSPPD---KPSSPSPRVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGG----RA 379
Query: 65 AGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVP----SLSLRR 120
AG + R P GRR RP P P S SL R
Sbjct: 380 AGGAGRRRRRRRRRRRSRSSASAPRRRGRR--------------RPRPAPPRGSSRSLSR 425
Query: 121 GRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGA 180
R +++S G RGA PGP G G+ R + RPP R A GA
Sbjct: 426 ARSSSDSGSG----RGAPGPGPEPGSERGHGGHGK-----RAKERPPRARPASTSPSPGA 476
Query: 181 QARAVRAEG 189
R EG
Sbjct: 477 HGRRGGPEG 485
>gi|169214778 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 37.4 bits (85), Expect = 0.012
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%)
Query: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123
LAGWD R L A + DP PP + + PAP+PS R R
Sbjct: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57
Query: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182
G R A+ P+ R P G GR + ++ HER PG+ E + A
Sbjct: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112
Query: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224
R +G+ +V AE + +Q A RR V +G G
Sbjct: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152
>gi|89058023 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 37.4 bits (85), Expect = 0.012
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%)
Query: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123
LAGWD R L A + DP PP + + PAP+PS R R
Sbjct: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57
Query: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182
G R A+ P+ R P G GR + ++ HER PG+ E + A
Sbjct: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112
Query: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224
R +G+ +V AE + +Q A RR V +G G
Sbjct: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152
>gi|89057843 PREDICTED: hypothetical protein LOC284801 [Homo
sapiens]
Length = 228
Score = 37.4 bits (85), Expect = 0.012
Identities = 47/162 (29%), Positives = 64/162 (39%), Gaps = 27/162 (16%)
Query: 64 LAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRG 123
LAGWD R L A + DP PP + + PAP+PS R R
Sbjct: 17 LAGWDAADSERWLRAAFRPASDPPPPRV---------------SSPPAPLPS----RDRC 57
Query: 124 AAESAEGWRQERGAVCPGPSGWGRLRP-RGRGREVAQSRHERRPPGMRLARELEGIGAQA 182
G R A+ P+ R P G GR + ++ HER PG+ E + A
Sbjct: 58 GRRRLRGTWSGRLALGKRPTVGARRSPGAGPGRRMDEN-HERCGPGV----EFVAVVASG 112
Query: 183 RAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQRGVQLGRSG 224
R +G+ +V AE + +Q A RR V +G G
Sbjct: 113 PRWRDQGLVRQVLVGAEGLPASQ--AGRRGTALVSVAVGSRG 152
>gi|7710145 methyl-CpG binding domain protein 2 testis-specific
isoform [Homo sapiens]
Length = 302
Score = 36.6 bits (83), Expect = 0.021
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 110 PAPVPSLSLRRGRGAAESAEGWRQ--ERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPP 167
P+PV + RG W+Q G VC G GR R RGRGR + R RPP
Sbjct: 43 PSPVSGVRREGARGGGRGRGRWKQAGRGGGVC----GRGRGRGRGRGRGRGRGRGRGRPP 98
>gi|4505117 methyl-CpG binding domain protein 2 isoform 1 [Homo
sapiens]
Length = 411
Score = 36.6 bits (83), Expect = 0.021
Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
Query: 110 PAPVPSLSLRRGRGAAESAEGWRQ--ERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPP 167
P+PV + RG W+Q G VC G GR R RGRGR + R RPP
Sbjct: 43 PSPVSGVRREGARGGGRGRGRWKQAGRGGGVC----GRGRGRGRGRGRGRGRGRGRGRPP 98
>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 35.4 bits (80), Expect = 0.047
Identities = 44/129 (34%), Positives = 51/129 (39%), Gaps = 29/129 (22%)
Query: 119 RRGRGAAESA------EGWRQERGAVCPGPSGW--GR-----LRPRGRGR--------EV 157
RR GAA S +GW ++ G PGP GW GR L PR +
Sbjct: 59 RRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQT 118
Query: 158 AQSRHERRPPGMRLA--RELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLLQ 215
A R RR P R A RE G G A A G AE +HL Q R RR+
Sbjct: 119 AVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGG-----EWAAEPLHLPQ-RGRRRRFTC 172
Query: 216 RGVQLGRSG 224
R + R G
Sbjct: 173 RSGRPPRRG 181
>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.0 bits (79), Expect = 0.061
Identities = 43/122 (35%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 119 RRGRGAAESA------EGWRQERGAVCPGPSGW--GR-----LRPRGRGR--------EV 157
RR GAA S +GW ++ G PGP GW GR L PR +
Sbjct: 59 RRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQT 118
Query: 158 AQSRHERRPPGMRLA--RELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ-GRAARRQLL 214
A R RR P R A RE G G A A G AE +HL Q GR A L
Sbjct: 119 AVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGG-----EWAAEPLHLPQRGRPAPLHLP 173
Query: 215 QR 216
+R
Sbjct: 174 ER 175
>gi|239756681 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 203
Score = 35.0 bits (79), Expect = 0.061
Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 114 PSLSLRRGRGAAESAEGWRQERGAVCPGPSG-------WGRLRPRGRGREVAQSRHER-- 164
P L L +GA +SAE + G CP P G G RG E A R R
Sbjct: 6 PGLGLTARKGAEDSAE----DLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPV 61
Query: 165 RPPGMRLAREL----------EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 214
R R+A + E A RA+R + R++ A T+ A R A L+
Sbjct: 62 RSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA-TLRRAIHRIAALSLV 120
Query: 215 QRGVQLGRSGCAHLE 229
R R C HLE
Sbjct: 121 LRASPAPRGPCGHLE 135
>gi|239751178 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 35.0 bits (79), Expect = 0.061
Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 114 PSLSLRRGRGAAESAEGWRQERGAVCPGPSG-------WGRLRPRGRGREVAQSRHER-- 164
P L L +GA +SAE + G CP P G G RG E A R R
Sbjct: 6 PGLGLTARKGAEDSAE----DLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPV 61
Query: 165 RPPGMRLAREL----------EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 214
R R+A + E A RA+R + R++ A T+ A R A L+
Sbjct: 62 RSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA-TLRRAIHRIAALSLV 120
Query: 215 QRGVQLGRSGCAHLE 229
R R C HLE
Sbjct: 121 LRASPAPRGPCGHLE 135
>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 35.0 bits (79), Expect = 0.061
Identities = 43/122 (35%), Positives = 49/122 (40%), Gaps = 29/122 (23%)
Query: 119 RRGRGAAESA------EGWRQERGAVCPGPSGW--GR-----LRPRGRGR--------EV 157
RR GAA S +GW ++ G PGP GW GR L PR +
Sbjct: 59 RRPIGAAPSVGPGGELQGWGRKSGCRPPGPEGWAGGRKLRRWLPPRRFSNFCCRSPCAQT 118
Query: 158 AQSRHERRPPGMRLA--RELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ-GRAARRQLL 214
A R RR P R A RE G G A A G AE +HL Q GR A L
Sbjct: 119 AVRRRRRRAPSPRGAGWREGAGAGRGTPATMAGG-----EWAAEPLHLPQRGRPAPLHLP 173
Query: 215 QR 216
+R
Sbjct: 174 ER 175
>gi|239745666 PREDICTED: basic helix-loop-helix family, member a9
[Homo sapiens]
Length = 235
Score = 35.0 bits (79), Expect = 0.061
Identities = 41/135 (30%), Positives = 52/135 (38%), Gaps = 24/135 (17%)
Query: 114 PSLSLRRGRGAAESAEGWRQERGAVCPGPSG-------WGRLRPRGRGREVAQSRHER-- 164
P L L +GA +SAE + G CP P G G RG E A R R
Sbjct: 6 PGLGLTARKGAEDSAE----DLGGPCPEPGGDSGVLGANGASCSRGEAEEPAGRRRARPV 61
Query: 165 RPPGMRLAREL----------EGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL 214
R R+A + E A RA+R + R++ A T+ A R A L+
Sbjct: 62 RSKARRMAANVRERKRILDYNEAFNALRRALRHDLGGKRLSKIA-TLRRAIHRIAALSLV 120
Query: 215 QRGVQLGRSGCAHLE 229
R R C HLE
Sbjct: 121 LRASPAPRGPCGHLE 135
>gi|194097436 CDC-like kinase 3 isoform a [Homo sapiens]
Length = 638
Score = 35.0 bits (79), Expect = 0.061
Identities = 29/80 (36%), Positives = 33/80 (41%), Gaps = 10/80 (12%)
Query: 107 EARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPG--PSGWGRLRPRGRGREVAQSRHER 164
+ARP P SL GRGA S EGW CPG SG RP R + R
Sbjct: 64 QARPLGPPGTSLL-GRGARRSGEGW-------CPGAFESGARAARPPSRVEPRLATAASR 115
Query: 165 RPPGMRLARELEGIGAQARA 184
G+ A G G AR+
Sbjct: 116 EGAGLPRAEVAAGSGRGARS 135
>gi|239753568 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 34.7 bits (78), Expect = 0.080
Identities = 34/130 (26%), Positives = 52/130 (40%), Gaps = 20/130 (15%)
Query: 39 GQAGATCKPAGRGSDSGRGTSRQKRLA--GWDEKSPVRDLVWAGQVLEDPTPPLIGRRNT 96
G A C+PA + T+R R + G K+ + PTPP + R
Sbjct: 2 GAATGGCQPAKPNRQASTDTNRSTRASSVGCLSKAAL------------PTPPQVHSRKP 49
Query: 97 AGFVYFTL---TLEARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPRGR 153
+ F TL R AP+P L RG A + W + ++C P PR R
Sbjct: 50 GPALRFPSGHHTLRERLAPIP---LGRGCPPALVSPAWGLQAHSLCGSPERHMAGIPRER 106
Query: 154 GREVAQSRHE 163
G++ + +H+
Sbjct: 107 GKKEQKVQHD 116
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 34.7 bits (78), Expect = 0.080
Identities = 45/150 (30%), Positives = 52/150 (34%), Gaps = 26/150 (17%)
Query: 3 QSRPGSALGPGRCGLVKAAESAAFAARSALL-RPGAPGQAGATCKPAGRGSDSGRGTSRQ 61
Q PGSA G G A R+ PGAPG G+ P RG RG
Sbjct: 1286 QGPPGSATAKGERGFPGADGRPGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGP 1345
Query: 62 KRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRG 121
K G +P GQV+ P L GR+ G P P L
Sbjct: 1346 KGEPG----AP-------GQVIGGEGPGLPGRKGDPG-------PSGPPGPRGPLGDPGP 1387
Query: 122 RG-------AAESAEGWRQERGAVCPGPSG 144
RG A + +G R ERG PG G
Sbjct: 1388 RGPPGLPGTAMKGDKGDRGERGPPGPGEGG 1417
Score = 29.3 bits (64), Expect = 3.3
Identities = 21/56 (37%), Positives = 22/56 (39%), Gaps = 15/56 (26%)
Query: 6 PGSALG----PGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRG 57
P A+G PG GLV S PG PGQ G T KP G D G
Sbjct: 2222 PTGAVGLPGPPGPSGLVGPQGS-----------PGLPGQVGETGKPGAPGRDGASG 2266
Score = 27.7 bits (60), Expect = 9.7
Identities = 46/168 (27%), Positives = 54/168 (32%), Gaps = 14/168 (8%)
Query: 6 PGSALGPGRCGLVKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDSGRGTSRQKRLA 65
PG PG G V S PG PGQ G+ + RG G +
Sbjct: 1426 PGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFP 1485
Query: 66 GWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRGAA 125
G L AG+ E P G R G P P + R+G
Sbjct: 1486 G--------PLGEAGEKGERGPPGPAGSRGLPGVA--GRPGAKGPEGPPGPTGRQGEKGE 1535
Query: 126 ESAEGWRQERGAVCPGPSG-WGRLRPRG-RGREVAQSRHERRPPGMRL 171
G G GP G G + P G RG Q ER PPG+ L
Sbjct: 1536 PGRPGDPAVVGPAVAGPKGEKGDVGPAGPRGATGVQG--ERGPPGLVL 1581
>gi|45827771 autoantigen RCD8 [Homo sapiens]
Length = 1401
Score = 34.7 bits (78), Expect = 0.080
Identities = 36/130 (27%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 110 PAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLRPRGRGREVAQSRHERRPPGM 169
P P L + + ++A G R V P W L + + RE+A+ RH +
Sbjct: 915 PRTSPKLKRKSKKDDGDAAMGSRLTEHQVAEPPEDWPALIWQQQ-RELAELRHSQEELLQ 973
Query: 170 RLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQGRAARRQLL---QRGVQLGRSGCA 226
RL +LEG+ + V V ET H + R R L QRG QL
Sbjct: 974 RLCTQLEGLQST--------VTGHVERALETRHEQEQRRLERALAEGQQRGGQLQEQLTQ 1025
Query: 227 HLERAQGCGV 236
L +A V
Sbjct: 1026 QLSQALSSAV 1035
>gi|73486666 alpha 1 type IX collagen isoform 1 precursor [Homo
sapiens]
Length = 921
Score = 33.5 bits (75), Expect = 0.18
Identities = 57/223 (25%), Positives = 74/223 (33%), Gaps = 33/223 (14%)
Query: 3 QSRPGSALGPGRCGL--------VKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDS 54
+ PG PG GL + A+ A + + PG PGQ G + KP +G
Sbjct: 555 KGEPGKPGPPGDAGLQGLPGVPGIPGAKGVA-GEKGSTGAPGKPGQMGNSGKPGQQGPPG 613
Query: 55 GRGTSRQKRLAG-WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPV 113
G + L G E PV G++ +P L G G P
Sbjct: 614 EVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPG 673
Query: 114 PSLSLRRGRGAAESAEGWRQERGAV----CPGPSGW-------GRLRPRGRGREVAQSRH 162
P +G A EG ERG + PGP G G P G R +
Sbjct: 674 P-----KGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEG-SRGLPGVEG 727
Query: 163 ERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ 205
R PPG R G+ + A GVQ H+ Q
Sbjct: 728 PRGPPGPR------GVQGEQGATGLPGVQGPPGRAPTDQHIKQ 764
>gi|73486664 alpha 1 type IX collagen isoform 2 precursor [Homo
sapiens]
Length = 678
Score = 33.5 bits (75), Expect = 0.18
Identities = 57/223 (25%), Positives = 74/223 (33%), Gaps = 33/223 (14%)
Query: 3 QSRPGSALGPGRCGL--------VKAAESAAFAARSALLRPGAPGQAGATCKPAGRGSDS 54
+ PG PG GL + A+ A + + PG PGQ G + KP +G
Sbjct: 312 KGEPGKPGPPGDAGLQGLPGVPGIPGAKGVA-GEKGSTGAPGKPGQMGNSGKPGQQGPPG 370
Query: 55 GRGTSRQKRLAG-WDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEARPAPV 113
G + L G E PV G++ +P L G G P
Sbjct: 371 EVGPRGPQGLPGSRGELGPVGSPGLPGKLGSLGSPGLPGLPGPPGLPGMKGDRGVVGEPG 430
Query: 114 PSLSLRRGRGAAESAEGWRQERGAV----CPGPSGW-------GRLRPRGRGREVAQSRH 162
P +G A EG ERG + PGP G G P G R +
Sbjct: 431 P-----KGEQGASGEEGEAGERGELGDIGLPGPKGSAGNPGEPGLRGPEG-SRGLPGVEG 484
Query: 163 ERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHLAQ 205
R PPG R G+ + A GVQ H+ Q
Sbjct: 485 PRGPPGPR------GVQGEQGATGLPGVQGPPGRAPTDQHIKQ 521
>gi|239755739 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.30
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 144 GWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHL 203
GWG +G R + +RPPG R AQARA R G + R A A
Sbjct: 24 GWGGEEVQGLARAGLAAGKGQRPPGPGRVR-----AAQARARRGGGARERPAEGARGPRA 78
Query: 204 AQGRAAR---RQLLQRGVQLGRSGCAHLERAQGC 234
A+G A QL R+ L R C
Sbjct: 79 ARGGARAGPDAQLRAARTHRARAQTPQLRREAAC 112
>gi|239752764 PREDICTED: hypothetical protein [Homo sapiens]
Length = 370
Score = 32.7 bits (73), Expect = 0.30
Identities = 33/105 (31%), Positives = 41/105 (39%), Gaps = 15/105 (14%)
Query: 85 DPTPPLIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSG 144
DP P + GR + + A PAPVPS + R GA RGA P
Sbjct: 271 DPGPIVGGRPENEDSLASQTSPPAPPAPVPSTARARSPGA---------RRGARELAPRA 321
Query: 145 WGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGAQARAVRAEG 189
R +P GR ++R E+R RE GA R A G
Sbjct: 322 GRRRQPSGRTSWRRRARREQRD------REPAVCGAWPRGSHAAG 360
>gi|239750250 PREDICTED: hypothetical protein [Homo sapiens]
Length = 202
Score = 32.7 bits (73), Expect = 0.30
Identities = 29/94 (30%), Positives = 35/94 (37%), Gaps = 8/94 (8%)
Query: 144 GWGRLRPRGRGREVAQSRHERRPPGMRLARELEGIGAQARAVRAEGVQHRVAHHAETMHL 203
GWG +G R + +RPPG R AQARA R G + R A A
Sbjct: 24 GWGGEEVQGLARAGLATGKGQRPPGPGRVR-----AAQARARRGGGARERPAEGARGPRA 78
Query: 204 AQGRAAR---RQLLQRGVQLGRSGCAHLERAQGC 234
A+G A QL R+ L R C
Sbjct: 79 ARGGARAGPDAQLRAARTHRARAQTPQLRREAAC 112
>gi|239743660 PREDICTED: hypothetical protein XP_002342926 [Homo
sapiens]
Length = 329
Score = 32.7 bits (73), Expect = 0.30
Identities = 45/154 (29%), Positives = 57/154 (37%), Gaps = 21/154 (13%)
Query: 3 QSRPGSA-LGPGR---CGLVKAAESAAFAARSA-LLRPGAPGQAGATCKPAGRGSDSGRG 57
++RP A L P R GL A A +S PG PG AG AG G G
Sbjct: 175 ETRPNEAHLAPPRGRVAGLDHLPHQALKAPQSPRAFPPGGPGDAGTPMPKAG-GLRKRPG 233
Query: 58 TSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGFVYFTLTLEA-----RPAP 112
+R + G P R L L + P L R T A RP P
Sbjct: 234 ITRTE---GNPSPRPPRRLT-----LPEDHPRLANARRRRKRALATRVRPAPQTSGRPGP 285
Query: 113 V--PSLSLRRGRGAAESAEGWRQERGAVCPGPSG 144
+ P++S+ + +GW Q RG GP G
Sbjct: 286 LGGPAISVVLSPASQAPEKGWSQSRGGARLGPEG 319
>gi|169211520 PREDICTED: hypothetical protein [Homo sapiens]
Length = 312
Score = 32.3 bits (72), Expect = 0.40
Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 4 SRPGSALGPGRCGLVKAAESAAFAARSALLRP------GAPGQAGATCKPAGRGSDSGRG 57
+RP GR G +A + R L P PG+ G +C PAG + G+
Sbjct: 117 ARPAPGTAAGRGGCCEALPAEGTCRRLVPLHPRSPAGESGPGRGGGSCGPAGTAA-GGKL 175
Query: 58 TSRQKRLAGWD-EKSPVRDLVWAGQVLEDPTPPLIGR 93
+R RL VW+ P PPL+GR
Sbjct: 176 RARLLRLPDCSLALGKASYSVWS--PTHFPVPPLLGR 210
>gi|239754838 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 32.3 bits (72), Expect = 0.40
Identities = 51/200 (25%), Positives = 70/200 (35%), Gaps = 44/200 (22%)
Query: 3 QSRPGSALGPGRCGLVKAAE-SAAFAARSALLRPGAPGQAGATCKPAGRGSDSG----RG 57
Q R LGP R + AA S R G G G PAG+GSD+G G
Sbjct: 80 QRRSKEGLGPFRAPRIFAARPSQPLGQRRGGGAKGQRGGGGPPNPPAGQGSDTGGTKTPG 139
Query: 58 TSRQKRLAGWDEKSPVRDLVWAGQVLEDPTPPLIGRRNTAGF----VYFTLTLEARPAPV 113
T+ A SP PL+G + G+ V L+L R +
Sbjct: 140 TTTAAAAAATGSASP-------------EARPLVGSCRSPGYGPSLVSADLSLPPRRLAI 186
Query: 114 PSLSLRRGRGAAESAEGW-----------------RQERGAVCPGPSGWGRLRPRGRGRE 156
P + G G+A S G ++ G++ PG G P+ +G
Sbjct: 187 PR---QLGSGSAPSRIGCASGSRASVVSSLKNPIRKEGFGSLVPGSKEAGAGPPKHKGPP 243
Query: 157 VAQSRHERRPPGMRLARELE 176
A H R P + A + E
Sbjct: 244 TAY--HARLPLAVETATDKE 261
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 32.3 bits (72), Expect = 0.40
Identities = 37/141 (26%), Positives = 49/141 (34%), Gaps = 13/141 (9%)
Query: 35 PGAPGQAGATCKPAGRGSDSGRGTSRQKRLAGWDEKSPVRDL-----VWAGQVLEDPTPP 89
P APG R S+S + R GW S R A
Sbjct: 15 PSAPGIGQV------RNSESRGAPYLRSRCTGWTPTSQTRPSGRPADACAADSGRRRASG 68
Query: 90 LIGRRNTAGFVYFTLTLEARPAPVPSLSLRRGRGAAESAEGWRQERGAVCPGPSGWGRLR 149
+GR + V +T + EA P + + RG G EG+R G + + W R
Sbjct: 69 RLGRSAVSSGVLWTDSPEAGPGRIRPGGVERGFGEPAKGEGFRGPVGRLIKTWASWSPAR 128
Query: 150 PRGRGREVAQ--SRHERRPPG 168
PR G A +R RP G
Sbjct: 129 PRPDGSIKASLPARLSPRPLG 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,279,687
Number of Sequences: 37866
Number of extensions: 594261
Number of successful extensions: 3583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 171
Number of HSP's that attempted gapping in prelim test: 3187
Number of HSP's gapped (non-prelim): 539
length of query: 249
length of database: 18,247,518
effective HSP length: 100
effective length of query: 149
effective length of database: 14,460,918
effective search space: 2154676782
effective search space used: 2154676782
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.