Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: BHLHA9 Sequence: fasta or formatted (203aa) NCBI GI: 239756681
Description:

PREDICTED: basic helix-loop-helix family, member a9

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt prot [235aa] PREDICTED: basic helix-loop-helix family, member a9
alt prot [235aa] PREDICTED: basic helix-loop-helix family, member a9
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         31           2
 C cysteine            3.0          6           1
 D aspartate           3.9          8           1
 E glutamate           4.4          9           2
 F phenylalanine       0.5          1           1
 G glycine            12.8         26           2
 H histidine           3.0          6           1
 I isoleucine          2.0          4           1
 K lysine              2.5          5           1
 L leucine             8.4         17           1
 M methionine          1.5          3           1
 N asparagine          2.0          4           1
 P proline            13.3         27           4
 Q glutamine           0.0          0           0
 R arginine           14.3         29           3
 S serine              7.4         15           1
 T threonine           2.0          4           1
 V valine              2.5          5           1
 W tryptophan          0.5          1           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: basic helix-loop-helix family, member a9... 
BHLHA9                0.960   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.960   PREDICTED: basic helix-loop-helix family, member a9...
SCXB                  0.106   scleraxis homolog B 
SCXA                  0.106   scleraxis homolog A 
PTF1A                 0.095   pancreas specific transcription factor, 1a 
ASCL5                 0.088   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.088   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.088   PREDICTED: achaete-scute complex homolog 5 
FERD3L                0.083   nephew of atonal 3 
NEUROD2               0.083   neurogenic differentiation 2 
MESP2                 0.078   mesoderm posterior 2 homolog 
ASCL2                 0.078   achaete-scute complex homolog-like 2 
BHLHA15               0.075   basic helix-loop-helix family, member a15 
NEUROG1               0.073   neurogenin 1 
ATOH1                 0.068   atonal homolog 1 
NEUROD4               0.068   neurogenic differentiation 4 
NEUROD1               0.065   neurogenic differentiation 1 
MYOD1                 0.063   myogenic differentiation 1 
BHLHE22               0.063   basic helix-loop-helix domain containing, class B, 5...
NEUROG3               0.060   neurogenin 3 
TCF15                 0.058   basic helix-loop-helix transcription factor 15 [Homo...
NEUROD6               0.055   neurogenic differentiation 6 
ATOH7                 0.055   atonal homolog 7 
NEUROG2               0.055   neurogenin 2 
BHLHE23               0.053   basic helix-loop-helix domain containing, class B, 4...
TWIST1                0.050   twist 
TCF4                  0.050   transcription factor 4 isoform b 
TCF4                  0.050   transcription factor 4 isoform a 
LYL1                  0.050   lymphoblastic leukemia derived sequence 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press