Guide to the Human Genome
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Name: LOC100128640 Sequence: fasta or formatted (352aa) NCBI GI: 239753568
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.4         40           2
 C cysteine            3.1         11           2
 D aspartate           2.3          8           2
 E glutamate           3.4         12           2
 F phenylalanine       3.7         13           1
 G glycine             6.8         24           2
 H histidine           4.8         17           2
 I isoleucine          1.7          6           1
 K lysine              3.7         13           2
 L leucine             8.2         29           1
 M methionine          0.6          2           1
 N asparagine          2.6          9           1
 P proline            12.8         45           2
 Q glutamine           4.5         16           2
 R arginine            9.9         35           2
 S serine              8.5         30           2
 T threonine           6.8         24           3
 V valine              3.1         11           1
 W tryptophan          0.9          3           1
 Y tyrosine            1.1          4           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
PRB1                  0.027   proline-rich protein BstNI subfamily 1 isoform 3 pre...
PRG4                  0.027   proteoglycan 4 isoform D 
PRG4                  0.027   proteoglycan 4 isoform C 
PRG4                  0.027   proteoglycan 4 isoform B 
PRG4                  0.027   proteoglycan 4 isoform A 
PRB3                  0.027   proline-rich protein BstNI subfamily 3 precursor [H...
SYN1                  0.024   synapsin I isoform Ia 
SYN1                  0.024   synapsin I isoform Ib 
PRB1                  0.020   proline-rich protein BstNI subfamily 1 isoform 1 pre...
FAM171A2              0.020   family with sequence similarity 171, member A2 [Hom...
PRB2                  0.020   proline-rich protein BstNI subfamily 2 
ASXL2                 0.020   additional sex combs like 2 
MAPK7                 0.018   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.018   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.018   mitogen-activated protein kinase 7 isoform 1 
MAPK7                 0.018   mitogen-activated protein kinase 7 isoform 2 
SMARCC2               0.018   SWI/SNF-related matrix-associated actin-dependent re...
SYNPO2L               0.018   synaptopodin 2-like isoform a 
SYNPO2L               0.018   synaptopodin 2-like isoform b 
AUTS2                 0.018   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.018   autism susceptibility candidate 2 isoform 1 
PRB4                  0.018   proline-rich protein BstNI subfamily 4 precursor [Ho...
CABLES2               0.018   Cdk5 and Abl enzyme substrate 2 
RAB11FIP3             0.017   rab11-family interacting protein 3 isoform 1 
AFF1                  0.017   myeloid/lymphoid or mixed-lineage leukemia trithorax ...
GJD4                  0.017   connexin40.1 
CBX6                  0.017   chromobox homolog 6 
LOC100289721          0.017   PREDICTED: hypothetical protein XP_002347280 
USP6NL                0.017   USP6 N-terminal like isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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