Guide to the Human Genome
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Name: BHLHA9 Sequence: fasta or formatted (235aa) NCBI GI: 239751178
Description:

PREDICTED: basic helix-loop-helix family, member a9

Referenced in:

Helix-Loop-Helix Transcription Factors

Other entries for this name:
alt mRNA [235aa] PREDICTED: basic helix-loop-helix family, member a9
alt prot [203aa] PREDICTED: basic helix-loop-helix family, member a9
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.6         39           2
 C cysteine            3.0          7           1
 D aspartate           3.4          8           1
 E glutamate           4.3         10           2
 F phenylalanine       0.4          1           1
 G glycine            13.2         31           2
 H histidine           2.6          6           1
 I isoleucine          1.7          4           1
 K lysine              2.1          5           1
 L leucine             8.1         19           1
 M methionine          1.3          3           1
 N asparagine          1.7          4           1
 P proline            13.2         31           4
 Q glutamine           0.4          1           1
 R arginine           13.6         32           3
 S serine              8.5         20           2
 T threonine           1.7          4           1
 V valine              2.6          6           1
 W tryptophan          0.9          2           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: basic helix-loop-helix family, member a9... 
BHLHA9                1.000   PREDICTED: basic helix-loop-helix family, member a9...
BHLHA9                0.825   PREDICTED: basic helix-loop-helix family, member a9...
SCXB                  0.091   scleraxis homolog B 
SCXA                  0.091   scleraxis homolog A 
PTF1A                 0.080   pancreas specific transcription factor, 1a 
ASCL5                 0.073   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.073   PREDICTED: achaete-scute complex homolog 5 (Drosoph...
ASCL5                 0.073   PREDICTED: achaete-scute complex homolog 5 
MESP2                 0.073   mesoderm posterior 2 homolog 
FERD3L                0.071   nephew of atonal 3 
NEUROD2               0.071   neurogenic differentiation 2 
ASCL2                 0.067   achaete-scute complex homolog-like 2 
BHLHA15               0.065   basic helix-loop-helix family, member a15 
NEUROG1               0.063   neurogenin 1 
OLIG2                 0.060   oligodendrocyte lineage transcription factor 2 [Homo...
ATOH1                 0.058   atonal homolog 1 
NEUROD4               0.058   neurogenic differentiation 4 
MYOD1                 0.056   myogenic differentiation 1 
NEUROD1               0.056   neurogenic differentiation 1 
OLIG1                 0.056   oligodendrocyte transcription factor 1 
BHLHE22               0.054   basic helix-loop-helix domain containing, class B, 5...
TAF4                  0.052   TBP-associated factor 4 
NEUROG3               0.052   neurogenin 3 
TCF15                 0.050   basic helix-loop-helix transcription factor 15 [Homo...
OLIG3                 0.048   oligodendrocyte transcription factor 3 
NEUROD6               0.048   neurogenic differentiation 6 
ATOH7                 0.048   atonal homolog 7 
BHLHE23               0.045   basic helix-loop-helix domain containing, class B, 4...
NEUROG2               0.045   neurogenin 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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