Guide to the Human Genome
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Name: LOC100290360 Sequence: fasta or formatted (81aa) NCBI GI: 239751089
Description:

PREDICTED: hypothetical protein XP_002347701

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.5         15           2
 C cysteine            4.9          4           2
 D aspartate           0.0          0           0
 E glutamate           7.4          6           1
 F phenylalanine       0.0          0           0
 G glycine            12.3         10           1
 H histidine           7.4          6           2
 I isoleucine          1.2          1           1
 K lysine              0.0          0           0
 L leucine             8.6          7           2
 M methionine          2.5          2           1
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine           8.6          7           1
 R arginine           13.6         11           2
 S serine              1.2          1           1
 T threonine           1.2          1           1
 V valine              9.9          8           3
 W tryptophan          1.2          1           1
 Y tyrosine            1.2          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347701 
LOC100292553          1.000   PREDICTED: hypothetical protein 
LOC100289223          1.000   PREDICTED: hypothetical protein XP_002344151 
SLC2A7                0.035   intestinal facilitative glucose transporter 7 [Homo...
LOC100290946          0.014   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.014   PREDICTED: hypothetical protein XP_002344246 
OTOF                  0.014   otoferlin isoform c 
OTOF                  0.014   otoferlin isoform b 
OTOF                  0.014   otoferlin isoform d 
OTOF                  0.014   otoferlin isoform a 
ZFP92                 0.014   zinc finger protein 92 homolog 
AK3                   0.007   adenylate kinase 3 
LOC100289135          0.007   hypothetical protein LOC100289135 
LOC100293333          0.007   PREDICTED: similar to hCG1802898 
LOC100290603          0.007   PREDICTED: hypothetical protein XP_002346928 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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