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Search of human proteins with 239756344
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756344 PREDICTED: hypothetical protein [Homo sapiens]
(212 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756344 PREDICTED: hypothetical protein [Homo sapiens] 435 e-122
gi|239750819 PREDICTED: hypothetical protein XP_002347583 [Homo ... 303 7e-83
gi|239745181 PREDICTED: hypothetical protein XP_002343383 [Homo ... 303 7e-83
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 38 0.006
gi|189181750 human immunodeficiency virus type I enhancer bindin... 37 0.009
gi|116089331 human immunodeficiency virus type I enhancer bindin... 37 0.009
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 36 0.021
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 36 0.021
gi|55750053 atrophin-1 [Homo sapiens] 36 0.028
gi|55750041 atrophin-1 [Homo sapiens] 36 0.028
gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo s... 36 0.028
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 35 0.036
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 35 0.036
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 35 0.036
gi|223941929 E74-like factor 1 (ets domain transcription factor)... 35 0.061
gi|189181724 proteoglycan 4 isoform D [Homo sapiens] 35 0.061
gi|189181722 proteoglycan 4 isoform C [Homo sapiens] 35 0.061
gi|189181720 proteoglycan 4 isoform B [Homo sapiens] 35 0.061
gi|67190163 proteoglycan 4 isoform A [Homo sapiens] 35 0.061
gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo ... 35 0.061
gi|56606142 complement component 1, q subcomponent-like 4 [Homo ... 35 0.061
gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo sa... 35 0.061
gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo sa... 35 0.061
gi|57864582 hornerin [Homo sapiens] 34 0.080
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 34 0.080
gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens] 34 0.10
gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens] 34 0.10
gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens] 34 0.10
gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B ... 34 0.10
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 34 0.10
>gi|239756344 PREDICTED: hypothetical protein [Homo sapiens]
Length = 212
Score = 435 bits (1119), Expect = e-122
Identities = 212/212 (100%), Positives = 212/212 (100%)
Query: 1 MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ 60
MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ
Sbjct: 1 MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ 60
Query: 61 ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL
Sbjct: 61 ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
Query: 121 KPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSS 180
KPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSS
Sbjct: 121 KPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSS 180
Query: 181 SMATSSSASSTGATGEGHHRHLLCSGFGWHTR 212
SMATSSSASSTGATGEGHHRHLLCSGFGWHTR
Sbjct: 181 SMATSSSASSTGATGEGHHRHLLCSGFGWHTR 212
>gi|239750819 PREDICTED: hypothetical protein XP_002347583 [Homo
sapiens]
Length = 182
Score = 303 bits (776), Expect = 7e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ 60
MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ
Sbjct: 1 MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ 60
Query: 61 ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL
Sbjct: 61 ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
Query: 121 KPQPPGTTPAASSPHLEFSYRNYLRP 146
KPQPPGTTPAASSPHLEFSYRNYLRP
Sbjct: 121 KPQPPGTTPAASSPHLEFSYRNYLRP 146
>gi|239745181 PREDICTED: hypothetical protein XP_002343383 [Homo
sapiens]
Length = 182
Score = 303 bits (776), Expect = 7e-83
Identities = 146/146 (100%), Positives = 146/146 (100%)
Query: 1 MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ 60
MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ
Sbjct: 1 MAAQIMRRSLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQ 60
Query: 61 ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL
Sbjct: 61 ILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
Query: 121 KPQPPGTTPAASSPHLEFSYRNYLRP 146
KPQPPGTTPAASSPHLEFSYRNYLRP
Sbjct: 121 KPQPPGTTPAASSPHLEFSYRNYLRP 146
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.1 bits (87), Expect = 0.006
Identities = 42/147 (28%), Positives = 59/147 (40%), Gaps = 5/147 (3%)
Query: 48 GEEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAG 107
GE T A + L K S S S SS S S S + + +G S+ + G
Sbjct: 2507 GEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGS-SSSDSEG 2565
Query: 108 PEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVK 167
P +P+ P P TPA E PA+R S SS ++
Sbjct: 2566 SSLPVQPEVALKRVPSP---TPAPKEAVRE-GRPPEPTPAKRKRRSSSSSSSSSSSSSSS 2621
Query: 168 QSRSCPLRGSWSSSMATSSSASSTGAT 194
S S S SSS ++SSS+SS+ ++
Sbjct: 2622 SSSSSSSSSSSSSSSSSSSSSSSSSSS 2648
Score = 33.1 bits (74), Expect = 0.18
Identities = 35/123 (28%), Positives = 47/123 (38%), Gaps = 16/123 (13%)
Query: 74 SPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASS 133
S S S SS S S S + + + S+P A P PK SP KP PPG + S
Sbjct: 2620 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKP-PPGERRSRSP 2678
Query: 134 PHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGA 193
R + R + SLS S V++ R P ++S S G
Sbjct: 2679 -------RKPIDSLRDSRSLSYSP--------VERRRPSPQPSPRDQQSSSSERGSRRGQ 2723
Query: 194 TGE 196
G+
Sbjct: 2724 RGD 2726
Score = 31.2 bits (69), Expect = 0.68
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 9/134 (6%)
Query: 76 SPSCRRHSSGSQSVSKTKTGP---TGLVSTPGAAGPE---FPRRPKQHSPLK---PQPPG 126
SP R S + K + P +G S+P P PRR + S K P P G
Sbjct: 1592 SPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEG 1651
Query: 127 TTPAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSS 186
++ SSP R R +R + S+ R + S + S ++S
Sbjct: 1652 SSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSAS 1711
Query: 187 SASSTGATGEGHHR 200
S+ T + HR
Sbjct: 1712 SSPETRSRTPPRHR 1725
Score = 29.3 bits (64), Expect = 2.6
Identities = 34/127 (26%), Positives = 53/127 (41%), Gaps = 27/127 (21%)
Query: 72 EVSPSPSCRRHSSGSQSVSKTKTGP-TGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPA 130
+ +P + SSG+ + + + G G++S P P HS + +PP +T A
Sbjct: 2465 QTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVP--------HSDVG-EPPASTGA 2515
Query: 131 ASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASS 190
L L+PA+ S S SS S S SSS ++SSS+ S
Sbjct: 2516 QQPSALAA-----LQPAKERRSSSSSSS------------SSSSSSSSSSSSSSSSSSGS 2558
Query: 191 TGATGEG 197
+ + EG
Sbjct: 2559 SSSDSEG 2565
Score = 27.3 bits (59), Expect = 9.8
Identities = 31/134 (23%), Positives = 44/134 (32%), Gaps = 23/134 (17%)
Query: 25 KDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQILGVEGDGKPHEV-----SPSPSC 79
KD + ++TT A + H + + S+ K H SPSP+
Sbjct: 241 KDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPAS 300
Query: 80 RRHSSGSQSVSKTKTGPTGLVSTPGAA--GPEFPRRPK----------------QHSPLK 121
R G S+ T T S+P A P P K + S
Sbjct: 301 GRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTG 360
Query: 122 PQPPGTTPAASSPH 135
P+PP TP + H
Sbjct: 361 PEPPAPTPLLAERH 374
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 37.4 bits (85), Expect = 0.009
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 15/194 (7%)
Query: 9 SLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQILGVEGDG 68
SL P ++ P + + K + TTS ++ + H E + S G+EG+
Sbjct: 766 SLEGPTGFQPRTPKPGSGSESGKERRTTSKEISVIQHTSSFEKSDSLEQPS---GLEGED 822
Query: 69 KPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTT 128
KP PSP H + S+ + K + P E P RP +P+PP
Sbjct: 823 KPLAQFPSPPPAPHGRSAHSL-QPKLVRQPNIQVPEILVTEEPDRP----DTEPEPPPKE 877
Query: 129 PAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQS------RSCPLRGSWSSSM 182
P + ++ R+ A L KRL A + S S PL S S
Sbjct: 878 P-EKTEEFQWPQRSQTLAQLPAEKLPPKKKRLRLAEMAQSSGESSFESSVPLSRSPSQES 936
Query: 183 ATSSSASSTGATGE 196
S S SS A+ E
Sbjct: 937 NVSLSGSSRSASFE 950
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 37.4 bits (85), Expect = 0.009
Identities = 50/194 (25%), Positives = 73/194 (37%), Gaps = 15/194 (7%)
Query: 9 SLSEPRQWRLLGPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQILGVEGDG 68
SL P ++ P + + K + TTS ++ + H E + S G+EG+
Sbjct: 766 SLEGPTGFQPRTPKPGSGSESGKERRTTSKEISVIQHTSSFEKSDSLEQPS---GLEGED 822
Query: 69 KPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTT 128
KP PSP H + S+ + K + P E P RP +P+PP
Sbjct: 823 KPLAQFPSPPPAPHGRSAHSL-QPKLVRQPNIQVPEILVTEEPDRP----DTEPEPPPKE 877
Query: 129 PAASSPHLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQS------RSCPLRGSWSSSM 182
P + ++ R+ A L KRL A + S S PL S S
Sbjct: 878 P-EKTEEFQWPQRSQTLAQLPAEKLPPKKKRLRLAEMAQSSGESSFESSVPLSRSPSQES 936
Query: 183 ATSSSASSTGATGE 196
S S SS A+ E
Sbjct: 937 NVSLSGSSRSASFE 950
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 36.2 bits (82), Expect = 0.021
Identities = 37/161 (22%), Positives = 56/161 (34%), Gaps = 2/161 (1%)
Query: 37 SALLTTLGHYEGEEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGP 96
S L + G ++ P A +Q+ G+P +P + R ++ P
Sbjct: 717 SQLYSLSGCSRTQQPAPLAAPAAQVSVPAPSGEPQASTPRATGRGARKAGSEPETSRPSP 776
Query: 97 TGLVSTPGAAGPEFPRRPKQHS-PLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSL 155
G S + GP P S P P T S P S + +RPA
Sbjct: 777 LGSYSPIRSVGPFGPSTDSSASTSCSPPPEQPTATESLPPWSHSCPSAVRPATSQQPQKE 836
Query: 156 SSKRLVRAAC-VKQSRSCPLRGSWSSSMATSSSASSTGATG 195
K L + + S P GSW S ++ + S + G G
Sbjct: 837 DQKILTLTEYRLHGTGSLPPLGSWRSGLSRAESLARGGGEG 877
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 36.2 bits (82), Expect = 0.021
Identities = 37/161 (22%), Positives = 56/161 (34%), Gaps = 2/161 (1%)
Query: 37 SALLTTLGHYEGEEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGP 96
S L + G ++ P A +Q+ G+P +P + R ++ P
Sbjct: 717 SQLYSLSGCSRTQQPAPLAAPAAQVSVPAPSGEPQASTPRATGRGARKAGSEPETSRPSP 776
Query: 97 TGLVSTPGAAGPEFPRRPKQHS-PLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSL 155
G S + GP P S P P T S P S + +RPA
Sbjct: 777 LGSYSPIRSVGPFGPSTDSSASTSCSPPPEQPTATESLPPWSHSCPSAVRPATSQQPQKE 836
Query: 156 SSKRLVRAAC-VKQSRSCPLRGSWSSSMATSSSASSTGATG 195
K L + + S P GSW S ++ + S + G G
Sbjct: 837 DQKILTLTEYRLHGTGSLPPLGSWRSGLSRAESLARGGGEG 877
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.8 bits (81), Expect = 0.028
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 42 TLGHYEGEEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTK--TGPTGL 99
T G G GP + +G GK H P+ SSG+ TK T P G
Sbjct: 224 TGGVLSGPPMGPKGGGAASSVGGPNGGKQHP-PPTTPISVSSSGASGAPPTKPPTTPVGG 282
Query: 100 VSTPGAAGP-EFPR-----------RPKQHSPLKPQPPGTTPAAS---SPHLEFSYRNYL 144
+ P A P FP RP ++ P G P SPH L
Sbjct: 283 GNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGL 342
Query: 145 RPA-RRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGAT 194
P + +L+ S L A+ + + P+R +SSS ++S++ASS+ ++
Sbjct: 343 PPGPEKGPTLAPSPHSLPPAS--SSAPAPPMRFPYSSSSSSSAAASSSSSS 391
Score = 31.2 bits (69), Expect = 0.68
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 58 ESQILGVEGDGKPHEV-----SPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPR 112
+ + L +G P ++ S SPS +S GS V +GL + GP P
Sbjct: 109 DGRSLNDDGSSDPRDIDQDNRSTSPSI--YSPGS--VENDSDSSSGL-----SQGPARPY 159
Query: 113 RPKQHSPLKPQPPGTTP----AASSPHLEFSYRNYLRP 146
P P PQPP +TP A+ PH + Y P
Sbjct: 160 HPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAP 197
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 35.8 bits (81), Expect = 0.028
Identities = 46/171 (26%), Positives = 68/171 (39%), Gaps = 21/171 (12%)
Query: 42 TLGHYEGEEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTK--TGPTGL 99
T G G GP + +G GK H P+ SSG+ TK T P G
Sbjct: 224 TGGVLSGPPMGPKGGGAASSVGGPNGGKQHP-PPTTPISVSSSGASGAPPTKPPTTPVGG 282
Query: 100 VSTPGAAGP-EFPR-----------RPKQHSPLKPQPPGTTPAAS---SPHLEFSYRNYL 144
+ P A P FP RP ++ P G P SPH L
Sbjct: 283 GNLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLPSPHAMGQGMGGL 342
Query: 145 RPA-RRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGAT 194
P + +L+ S L A+ + + P+R +SSS ++S++ASS+ ++
Sbjct: 343 PPGPEKGPTLAPSPHSLPPAS--SSAPAPPMRFPYSSSSSSSAAASSSSSS 391
Score = 31.2 bits (69), Expect = 0.68
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 18/98 (18%)
Query: 58 ESQILGVEGDGKPHEV-----SPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPR 112
+ + L +G P ++ S SPS +S GS V +GL + GP P
Sbjct: 109 DGRSLNDDGSSDPRDIDQDNRSTSPSI--YSPGS--VENDSDSSSGL-----SQGPARPY 159
Query: 113 RPKQHSPLKPQPPGTTP----AASSPHLEFSYRNYLRP 146
P P PQPP +TP A+ PH + Y P
Sbjct: 160 HPPPLFPPSPQPPDSTPRQPEASFEPHPSVTPTGYHAP 197
>gi|54607110 zinc finger, MIZ-type containing 2 isoform 2 [Homo
sapiens]
Length = 894
Score = 35.8 bits (81), Expect = 0.028
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 20 GPDLEKDALAHKVQATTSALLTTLGHYEGEEAGPTRAWESQILGVEGDGKPHEVSPS-PS 78
GP + V+ T S + + +G + P+ A + G+P SPS P
Sbjct: 253 GPPQAQPLPRQGVKRTYSEVYPGQQYLQGGQYAPSTAQFAP-----SPGQPPAPSPSYPG 307
Query: 79 CRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLE 137
R + S + GPTGL P + P +P P +P P P ++ SP+ E
Sbjct: 308 HRLPLQQGMTQSLSVPGPTGLHYKPTRSIPGYPSSPLPGNPTPPMTPSSSVPYMSPNQE 366
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 35.4 bits (80), Expect = 0.036
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 63 GVEGDGKPHE-VSPSPSCRRHSSGSQS-VSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
G E +P + + P P RR+S S S S ++GP G S GP R ++ +
Sbjct: 331 GPETPPRPRDQLPPHPRSRRYSGDSDSSASSAQSGPLGTRSDDTGTGPRRERPSRRLTTG 390
Query: 121 KPQPPGTTPAASSPHLEFSYRNYLR--PARRAASLSLSS 157
P P PA S + R R P R A LS+ S
Sbjct: 391 TPASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSVPS 429
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 35.4 bits (80), Expect = 0.036
Identities = 31/99 (31%), Positives = 42/99 (42%), Gaps = 4/99 (4%)
Query: 63 GVEGDGKPHE-VSPSPSCRRHSSGSQS-VSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPL 120
G E +P + + P P RR+S S S S ++GP G S GP R ++ +
Sbjct: 331 GPETPPRPRDQLPPHPRSRRYSGDSDSSASSAQSGPLGTRSDDTGTGPRRERPSRRLTTG 390
Query: 121 KPQPPGTTPAASSPHLEFSYRNYLR--PARRAASLSLSS 157
P P PA S + R R P R A LS+ S
Sbjct: 391 TPASPRRPPALRSQSRDRLDRGRPRGAPGGRGAQLSVPS 429
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 35.4 bits (80), Expect = 0.036
Identities = 48/173 (27%), Positives = 62/173 (35%), Gaps = 17/173 (9%)
Query: 46 YEGEEAGPTRAWESQILGVEGDGKPHE-VSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPG 104
Y G + +R+ S H S S S R S S S S T + + T G
Sbjct: 564 YSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSPSPSPTPSPHRPSIRTKG 623
Query: 105 AAGPEFPRRPKQHSPLKPQPPGTTPAASS----------PHLEFSYRNYLRPAR-----R 149
P P + + S KP PP P A+ P R RPAR R
Sbjct: 624 EPAPP-PGKAGEKSVKKPAPPPAPPQATKTTAPVPEPTKPGDPREARRKERPARTPPRRR 682
Query: 150 AASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGATGEGHHRHL 202
S S S + +SRS + S S ATSSS+S+ E + L
Sbjct: 683 TLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSVDSEDMYADL 735
>gi|223941929 E74-like factor 1 (ets domain transcription factor)
isoform b [Homo sapiens]
Length = 595
Score = 34.7 bits (78), Expect = 0.061
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 74 SPSPSC-RRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPK--QHSPLKPQPPGTTPA 130
SP P + +G V +T+ +PGA+ PE P+R K + P +P P TTP
Sbjct: 110 SPGPMLDEKRINGIPEVMETQQVQEKYADSPGASSPEQPKRKKGRKTKPPRPDSPATTPN 169
Query: 131 AS 132
S
Sbjct: 170 IS 171
>gi|189181724 proteoglycan 4 isoform D [Homo sapiens]
Length = 1270
Score = 34.7 bits (78), Expect = 0.061
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVS------T 102
+E PT E +G P+P+ + + + T GPT S T
Sbjct: 629 KEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTT 688
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P KP P TTP P
Sbjct: 689 PKETAPTTPKEPAPTTPKKPAP--TTPETPPP 718
Score = 31.6 bits (70), Expect = 0.52
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLV------ST 102
+E PT E+ +G P+P+ + + + T PT +T
Sbjct: 560 KEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTT 619
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P +P P TTP ++P
Sbjct: 620 PKGTAPTTPKEPAPTTPKEPAP--TTPKGTAP 649
Score = 31.6 bits (70), Expect = 0.52
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 70 PHEVSPS-PSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPK----QHSPLKPQP 124
P + +P+ P ++ S T PT + +P + PE P ++SP +P
Sbjct: 705 PKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGV 764
Query: 125 PGT-TPAASSPHLEFSYRNYL--RPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSS 181
P T TPAA+ P + + ++ R R + ++ ++ + ++ + + +++
Sbjct: 765 PTTKTPAATKPEMTTTAKDKTTERDLRTTPETTTAAPKMTKETATTTEKTTESKITATTT 824
Query: 182 MATSSSASST 191
TS++ T
Sbjct: 825 QVTSTTTQDT 834
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLV-STPGAAGPEFPRRPKQHSPLKPQPPGTTPAASS 133
P+P+ + + T T P +TP AA P P+ P +P +P P TTP +
Sbjct: 506 PAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAP--TTPKEPA 563
Query: 134 P 134
P
Sbjct: 564 P 564
Score = 29.3 bits (64), Expect = 2.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + + T +TP P P++P +P +P P TTP +P
Sbjct: 270 PAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTP 327
Score = 28.5 bits (62), Expect = 4.4
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P+ P +P +P P PA ++P
Sbjct: 286 PAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 345
Score = 28.1 bits (61), Expect = 5.7
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 317 PAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAP 374
Query: 135 HLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASST 191
+ P A + + S+ + ++S P S T A +T
Sbjct: 375 -TTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTT 430
Score = 27.7 bits (60), Expect = 7.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 403 PAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPAP 460
>gi|189181722 proteoglycan 4 isoform C [Homo sapiens]
Length = 1311
Score = 34.7 bits (78), Expect = 0.061
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVS------T 102
+E PT E +G P+P+ + + + T GPT S T
Sbjct: 670 KEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTT 729
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P KP P TTP P
Sbjct: 730 PKETAPTTPKEPAPTTPKKPAP--TTPETPPP 759
Score = 31.6 bits (70), Expect = 0.52
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLV------ST 102
+E PT E+ +G P+P+ + + + T PT +T
Sbjct: 601 KEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTT 660
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P +P P TTP ++P
Sbjct: 661 PKGTAPTTPKEPAPTTPKEPAP--TTPKGTAP 690
Score = 31.6 bits (70), Expect = 0.52
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 70 PHEVSPS-PSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPK----QHSPLKPQP 124
P + +P+ P ++ S T PT + +P + PE P ++SP +P
Sbjct: 746 PKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGV 805
Query: 125 PGT-TPAASSPHLEFSYRNYL--RPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSS 181
P T TPAA+ P + + ++ R R + ++ ++ + ++ + + +++
Sbjct: 806 PTTKTPAATKPEMTTTAKDKTTERDLRTTPETTTAAPKMTKETATTTEKTTESKITATTT 865
Query: 182 MATSSSASST 191
TS++ T
Sbjct: 866 QVTSTTTQDT 875
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLV-STPGAAGPEFPRRPKQHSPLKPQPPGTTPAASS 133
P+P+ + + T T P +TP AA P P+ P +P +P P TTP +
Sbjct: 547 PAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAP--TTPKEPA 604
Query: 134 P 134
P
Sbjct: 605 P 605
Score = 29.3 bits (64), Expect = 2.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + + T +TP P P++P +P +P P TTP +P
Sbjct: 311 PAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTP 368
Score = 28.5 bits (62), Expect = 4.4
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P+ P +P +P P PA ++P
Sbjct: 327 PAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 386
Score = 28.1 bits (61), Expect = 5.7
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 358 PAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAP 415
Query: 135 HLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASST 191
+ P A + + S+ + ++S P S T A +T
Sbjct: 416 -TTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTT 471
Score = 27.7 bits (60), Expect = 7.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 444 PAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPAP 501
>gi|189181720 proteoglycan 4 isoform B [Homo sapiens]
Length = 1363
Score = 34.7 bits (78), Expect = 0.061
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVS------T 102
+E PT E +G P+P+ + + + T GPT S T
Sbjct: 722 KEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTT 781
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P KP P TTP P
Sbjct: 782 PKETAPTTPKEPAPTTPKKPAP--TTPETPPP 811
Score = 31.6 bits (70), Expect = 0.52
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLV------ST 102
+E PT E+ +G P+P+ + + + T PT +T
Sbjct: 653 KEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTT 712
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P +P P TTP ++P
Sbjct: 713 PKGTAPTTPKEPAPTTPKEPAP--TTPKGTAP 742
Score = 31.6 bits (70), Expect = 0.52
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 70 PHEVSPS-PSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPK----QHSPLKPQP 124
P + +P+ P ++ S T PT + +P + PE P ++SP +P
Sbjct: 798 PKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGV 857
Query: 125 PGT-TPAASSPHLEFSYRNYL--RPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSS 181
P T TPAA+ P + + ++ R R + ++ ++ + ++ + + +++
Sbjct: 858 PTTKTPAATKPEMTTTAKDKTTERDLRTTPETTTAAPKMTKETATTTEKTTESKITATTT 917
Query: 182 MATSSSASST 191
TS++ T
Sbjct: 918 QVTSTTTQDT 927
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLV-STPGAAGPEFPRRPKQHSPLKPQPPGTTPAASS 133
P+P+ + + T T P +TP AA P P+ P +P +P P TTP +
Sbjct: 599 PAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAP--TTPKEPA 656
Query: 134 P 134
P
Sbjct: 657 P 657
Score = 29.3 bits (64), Expect = 2.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + + T +TP P P++P +P +P P TTP +P
Sbjct: 363 PAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTP 420
Score = 28.5 bits (62), Expect = 4.4
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P+ P +P +P P PA ++P
Sbjct: 379 PAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 438
Score = 28.1 bits (61), Expect = 5.7
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 410 PAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAP 467
Query: 135 HLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASST 191
+ P A + + S+ + ++S P S T A +T
Sbjct: 468 -TTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTT 523
Score = 27.7 bits (60), Expect = 7.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 496 PAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPAP 553
>gi|67190163 proteoglycan 4 isoform A [Homo sapiens]
Length = 1404
Score = 34.7 bits (78), Expect = 0.061
Identities = 25/92 (27%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVS------T 102
+E PT E +G P+P+ + + + T GPT S T
Sbjct: 763 KEPAPTTPKEPAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKGPTSTTSDKPAPTT 822
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P KP P TTP P
Sbjct: 823 PKETAPTTPKEPAPTTPKKPAP--TTPETPPP 852
Score = 31.6 bits (70), Expect = 0.52
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 49 EEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLV------ST 102
+E PT E+ +G P+P+ + + + T PT +T
Sbjct: 694 KEPAPTTPKETAPTTPKGTAPTTLKEPAPTTPKKPAPKELAPTTTKEPTSTTCDKPAPTT 753
Query: 103 PGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P P P+ P +P +P P TTP ++P
Sbjct: 754 PKGTAPTTPKEPAPTTPKEPAP--TTPKGTAP 783
Score = 31.6 bits (70), Expect = 0.52
Identities = 26/130 (20%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Query: 70 PHEVSPS-PSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPK----QHSPLKPQP 124
P + +P+ P ++ S T PT + +P + PE P ++SP +P
Sbjct: 839 PKKPAPTTPETPPPTTSEVSTPTTTKEPTTIHKSPDESTPELSAEPTPKALENSPKEPGV 898
Query: 125 PGT-TPAASSPHLEFSYRNYL--RPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSS 181
P T TPAA+ P + + ++ R R + ++ ++ + ++ + + +++
Sbjct: 899 PTTKTPAATKPEMTTTAKDKTTERDLRTTPETTTAAPKMTKETATTTEKTTESKITATTT 958
Query: 182 MATSSSASST 191
TS++ T
Sbjct: 959 QVTSTTTQDT 968
Score = 30.4 bits (67), Expect = 1.2
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLV-STPGAAGPEFPRRPKQHSPLKPQPPGTTPAASS 133
P+P+ + + T T P +TP AA P P+ P +P +P P TTP +
Sbjct: 640 PAPTTPEELAPTTPEEPTPTTPEEPAPTTPKAAAPNTPKEPAPTTPKEPAP--TTPKEPA 697
Query: 134 P 134
P
Sbjct: 698 P 698
Score = 29.3 bits (64), Expect = 2.6
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + + T +TP P P++P +P +P P TTP +P
Sbjct: 404 PAPTTPKEPAPTTTKEPAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPTP 461
Score = 28.5 bits (62), Expect = 4.4
Identities = 14/60 (23%), Positives = 25/60 (41%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P+ P +P +P P PA ++P
Sbjct: 420 PAPTTTKSAPTTPKEPAPTTPKKPAPTTPKEPAPTTPKEPTPTTPKEPAPTTKEPAPTTP 479
Score = 28.1 bits (61), Expect = 5.7
Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 3/117 (2%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 451 PAPTTPKEPTPTTPKEPAPTTKEPAPTTPKEPAPTAPKKPAPTTPKEPAP--TTPKEPAP 508
Query: 135 HLEFSYRNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASST 191
+ P A + + S+ + ++S P S T A +T
Sbjct: 509 -TTTKEPSPTTPKEPAPTTTKSAPTTTKEPAPTTTKSAPTTPKEPSPTTTKEPAPTT 564
Score = 27.7 bits (60), Expect = 7.5
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 75 PSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSP 134
P+P+ + + + T +TP P P++P +P +P P TTP +P
Sbjct: 537 PAPTTTKSAPTTPKEPSPTTTKEPAPTTPKEPAPTTPKKPAPTTPKEPAP--TTPKEPAP 594
>gi|239758167 PREDICTED: hypothetical protein XP_002346321 [Homo
sapiens]
Length = 271
Score = 34.7 bits (78), Expect = 0.061
Identities = 44/167 (26%), Positives = 59/167 (35%), Gaps = 25/167 (14%)
Query: 44 GHYEGEEAGPTRAWESQIL------GVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGP- 96
G E ++ G AW+ L G G+G + PS C R +S+ P
Sbjct: 31 GRAEEDKLGSAAAWKVAELALPGGSGSRGEGPTPSLKPSAQCVRSPGVPRSLGGLCRAPD 90
Query: 97 ------TGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYRNYLRPARRA 150
+ P GP+ R + ++P+ PG PAA S S R RP R
Sbjct: 91 PALPVSVAVPPCPACRGPQSISRSRPRRAVRPR-PGPWPAAPSRGPVRSCRG-PRPGRAL 148
Query: 151 ASLSLSSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGATGEG 197
SL L V + SC S SA GA+G G
Sbjct: 149 GSLPL----------VLPAGSCGSCQEDSLGNQARPSALEIGASGVG 185
>gi|56606142 complement component 1, q subcomponent-like 4 [Homo
sapiens]
Length = 238
Score = 34.7 bits (78), Expect = 0.061
Identities = 29/82 (35%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 67 DGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEF-PRRPKQHSPLKPQPP 125
DG P V P P + G + K G G PG GP P RP P P P
Sbjct: 43 DGAPASVPPFPPGAKGEVGRRG----KAGLRGPPGPPGPRGPPGEPGRPGPPGPPGPGPG 98
Query: 126 GTTPAAS-SPHLEFSYRNYLRP 146
G PAA P + F Y RP
Sbjct: 99 GVAPAAGYVPRIAF-YAGLRRP 119
>gi|75750474 spectrin domain with coiled-coils 1 NSP5a3b [Homo
sapiens]
Length = 987
Score = 34.7 bits (78), Expect = 0.061
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 25/176 (14%)
Query: 5 IMRRSLSEPRQWRLLGPDLEKDAL-AHKVQATTSALLTTLGHYEGEEAGPTRAWESQILG 63
+ ++ E +WR DL+ + A+ ++ L T+ EE + ++
Sbjct: 629 LTKQMKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNARLQKELGD 688
Query: 64 VEGDGK-------PHEVSPSPSCRRHSSGSQ----SVSKTKTGPTGLVST---------- 102
V+G G+ P V P + + VS+T P +T
Sbjct: 689 VQGHGRVVTSRAAPPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPESATTVKSLIKSFDL 748
Query: 103 --PGAAGPEFPRRPKQHSPLKPQPPGTTPAAS-SPHLEFSYRNYLRPARRAASLSL 155
PG AG SPL P T PAA+ SP S + +RPA R + L
Sbjct: 749 GRPGGAGQNISVHKTPRSPLSGIPVRTAPAAAVSPMQRHSTYSSVRPASRGVTQRL 804
>gi|75750472 spectrin domain with coiled-coils 1 NSP5b3b [Homo
sapiens]
Length = 1068
Score = 34.7 bits (78), Expect = 0.061
Identities = 41/176 (23%), Positives = 64/176 (36%), Gaps = 25/176 (14%)
Query: 5 IMRRSLSEPRQWRLLGPDLEKDAL-AHKVQATTSALLTTLGHYEGEEAGPTRAWESQILG 63
+ ++ E +WR DL+ + A+ ++ L T+ EE + ++
Sbjct: 710 LTKQMKEETEEWRRFQADLQTAVVVANDIKCEAQQELRTVKRKLLEEEEKNARLQKELGD 769
Query: 64 VEGDGK-------PHEVSPSPSCRRHSSGSQ----SVSKTKTGPTGLVST---------- 102
V+G G+ P V P + + VS+T P +T
Sbjct: 770 VQGHGRVVTSRAAPPPVDEEPESSEVDAAGRWPGVCVSRTSPTPPESATTVKSLIKSFDL 829
Query: 103 --PGAAGPEFPRRPKQHSPLKPQPPGTTPAAS-SPHLEFSYRNYLRPARRAASLSL 155
PG AG SPL P T PAA+ SP S + +RPA R + L
Sbjct: 830 GRPGGAGQNISVHKTPRSPLSGIPVRTAPAAAVSPMQRHSTYSSVRPASRGVTQRL 885
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 34.3 bits (77), Expect = 0.080
Identities = 44/160 (27%), Positives = 57/160 (35%), Gaps = 27/160 (16%)
Query: 44 GHYEGEEAGPTRAW------ESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPT 97
G +G AG + ++ Q LG G SPSPS RH SGS+ S GP
Sbjct: 504 GERQGSSAGSSSSYGQHGSGSRQSLGHSRHGSGSGQSPSPSRGRHESGSRQSS--SYGPH 561
Query: 98 GLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSLSS 157
G S + S P G+ ++ H E + +S SS
Sbjct: 562 GYGS-------------GRSSSRGPYESGSGHSSGLGHQESRSGQSSGYGQHGSSSGHSS 608
Query: 158 KRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGATGEG 197
+ QS SC G ATS +SS G G G
Sbjct: 609 THGQHGSTSGQSSSCGQHG------ATSGQSSSHGQHGSG 642
Score = 30.0 bits (66), Expect = 1.5
Identities = 46/173 (26%), Positives = 64/173 (36%), Gaps = 34/173 (19%)
Query: 44 GHYEGEEAGPTRAW------ESQILGVEGDGKPHEVSPSPSCRRHSSGS-QSVSKTKTGP 96
G G +G + ++ Q LG G SPSPS RH SGS QS S + G
Sbjct: 1440 GERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGS 1499
Query: 97 -TGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSL 155
+G S+ G P G++ ++ H E + +S
Sbjct: 1500 GSGWSSSRG-----------------PYESGSSHSSGLGHRESRSGQSSGYGQHGSSSGH 1542
Query: 156 SSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGATGEGHHRHLLCSGFG 208
SS + QS SC G A+S +SS G G G + SG+G
Sbjct: 1543 SSTHGQHGSTSGQSSSCGQHG------ASSGQSSSHGQHGSGSSQ---SSGYG 1586
Score = 29.6 bits (65), Expect = 2.0
Identities = 45/171 (26%), Positives = 61/171 (35%), Gaps = 30/171 (17%)
Query: 44 GHYEGEEAGPTRAW------ESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPT 97
G G +G + ++ Q LG G SPSPS RH SGS S GP
Sbjct: 1910 GEQHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSS--SYGPY 1967
Query: 98 GLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSLSS 157
G +G R P + G+ ++ H E + +S SS
Sbjct: 1968 G-----SGSGWSSSRGPYE--------SGSGHSSGLGHRESRSGQSSGYGQHGSSSGHSS 2014
Query: 158 KRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGATGEGHHRHLLCSGFG 208
+ QS SC G A+S +SS G G G + SG+G
Sbjct: 2015 THGQHGSASGQSSSCGQHG------ASSGQSSSHGQHGSGSSQ---SSGYG 2056
Score = 28.9 bits (63), Expect = 3.4
Identities = 46/173 (26%), Positives = 63/173 (36%), Gaps = 34/173 (19%)
Query: 44 GHYEGEEAGPTRAW------ESQILGVEGDGKPHEVSPSPSCRRHSSGS-QSVSKTKTGP 96
G G +G + ++ Q LG G SPSPS RH SGS QS S + G
Sbjct: 2380 GERHGSSSGSSSSYGQHGSGSRQSLGHGQHGSGSGQSPSPSRGRHGSGSGQSSSYSPYGS 2439
Query: 97 -TGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYRNYLRPARRAASLSL 155
+G S+ G P G+ ++ H E + +S
Sbjct: 2440 GSGWSSSRG-----------------PYESGSGHSSGLGHRESRSGQSSGYGQHGSSSGH 2482
Query: 156 SSKRLVRAACVKQSRSCPLRGSWSSSMATSSSASSTGATGEGHHRHLLCSGFG 208
SS + QS SC G A+S +SS G G G + SG+G
Sbjct: 2483 SSTHGQHGSTSGQSSSCGQHG------ASSGQSSSHGQHGSGSSQ---SSGYG 2526
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 34.3 bits (77), Expect = 0.080
Identities = 33/115 (28%), Positives = 44/115 (38%), Gaps = 5/115 (4%)
Query: 81 RHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSY 140
R S G+ S ++T + A P P Q SP + P GT P +SP +
Sbjct: 3 RDSHGNASPARTPSAGASPAQASPAGTPPGRASPAQASPAQASPAGTPPGRASP----AQ 58
Query: 141 RNYLRPARRAASLSLSSKRLVRAACVKQSRSCPLRGSWS-SSMATSSSASSTGAT 194
+ AS +S A +R+ P S S SS SSSA S T
Sbjct: 59 ASPAGTPPGRASPGRASPAQASPAQASPARASPALASLSRSSSGRSSSARSASVT 113
Score = 31.6 bits (70), Expect = 0.52
Identities = 42/139 (30%), Positives = 66/139 (47%), Gaps = 20/139 (14%)
Query: 70 PHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEF-------PRR--PKQHSPL 120
P + SP+ + +S +Q+ S + P G + PG A P P R P + SP
Sbjct: 21 PAQASPAGTPPGRASPAQA-SPAQASPAG--TPPGRASPAQASPAGTPPGRASPGRASPA 77
Query: 121 KPQPPGTTPAASSPHLEFSYRNY--LRPARRAASLSLSSKR--LVRAACVKQSRSCPLRG 176
+ P +PA +SP L R+ + R+AS++ S R LVRA V + P+R
Sbjct: 78 QASPAQASPARASPALASLSRSSSGRSSSARSASVTTSPTRVYLVRATPV---GAVPIRS 134
Query: 177 SWS-SSMATSSSASSTGAT 194
S + S+ AT ++ S G +
Sbjct: 135 SPARSAPATRATRESPGTS 153
>gi|169216092 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.9 bits (76), Expect = 0.10
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 53 PTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPR 112
P A S + G EG H V P + + + +GPTG +GP PR
Sbjct: 37 PRGAKPSNLWGKEGG---HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
Query: 113 RPKQHSPLKP 122
+ H+P P
Sbjct: 94 KGASHTPEAP 103
>gi|169215887 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.9 bits (76), Expect = 0.10
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 53 PTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPR 112
P A S + G EG H V P + + + +GPTG +GP PR
Sbjct: 37 PRGAKPSNLWGKEGG---HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
Query: 113 RPKQHSPLKP 122
+ H+P P
Sbjct: 94 KGASHTPEAP 103
>gi|169215666 PREDICTED: similar to hCG2038853 [Homo sapiens]
Length = 191
Score = 33.9 bits (76), Expect = 0.10
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 53 PTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAAGPEFPR 112
P A S + G EG H V P + + + +GPTG +GP PR
Sbjct: 37 PRGAKPSNLWGKEGG---HPVVPKAQVKARGGWGEGLELGGSGPTGKARPASESGPLTPR 93
Query: 113 RPKQHSPLKP 122
+ H+P P
Sbjct: 94 KGASHTPEAP 103
>gi|4502523 calcium channel, voltage-dependent, N type, alpha 1B
subunit [Homo sapiens]
Length = 2339
Score = 33.9 bits (76), Expect = 0.10
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 82 HSSGSQSVSKTKTGPTGLVSTPGAAGPEFPRRPKQHSPLKPQPPGTTPAASSPHLEFSYR 141
H GS SV+ + T STPG G RR +PL P+P T A+S + F+
Sbjct: 2161 HPQGSGSVNGSPLLSTSGASTPGRGG----RRQLPQTPLTPRPSITYKTANSSPIHFAGA 2216
Query: 142 NYLRPARRAASLS 154
PA LS
Sbjct: 2217 QTSLPAFSPGRLS 2229
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 33.9 bits (76), Expect = 0.10
Identities = 29/91 (31%), Positives = 37/91 (40%), Gaps = 22/91 (24%)
Query: 47 EGEEAGPTRAWESQILGVEGDGKPHEVSPSPSCRRHSSGSQSVSKTKTGPTGLVSTPGAA 106
+GE+ P A + G++GD PH P P K TGP G + PG+
Sbjct: 345 QGEKGDPALAGLNGENGLKGDLGPHG-PPGPKGE----------KGDTGPPGPPALPGSL 393
Query: 107 GPEFP-----------RRPKQHSPLKPQPPG 126
G + P RR K P KP PPG
Sbjct: 394 GIQGPQGPPGKEGQRGRRGKTGPPGKPGPPG 424
Score = 28.5 bits (62), Expect = 4.4
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 94 TGPTGLVSTPGAAGPEFPRRPK--QHSPLKPQPPGTTPAASSPHLEFSYRN 142
TGP GL+ G GP + K P KP PPG P + F+ RN
Sbjct: 779 TGPPGLMGRTGHPGPTGAKGEKGSDGPPGKPGPPG------PPGIPFNERN 823
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.125 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,144,020
Number of Sequences: 37866
Number of extensions: 541033
Number of successful extensions: 4596
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 366
Number of HSP's that attempted gapping in prelim test: 3534
Number of HSP's gapped (non-prelim): 1295
length of query: 212
length of database: 18,247,518
effective HSP length: 98
effective length of query: 114
effective length of database: 14,536,650
effective search space: 1657178100
effective search space used: 1657178100
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.