Guide to the Human Genome
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Name: CACNA1B Sequence: fasta or formatted (2339aa) NCBI GI: 4502523
Description:

calcium channel, voltage-dependent, N type, alpha 1B subunit

Referenced in:

Calcium and TRP Cation Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9        185           2
 C cysteine            1.7         39           1
 D aspartate           4.1         95           3
 E glutamate           6.7        157           3
 F phenylalanine       5.7        133           3
 G glycine             7.0        163           3
 H histidine           2.5         59           5
 I isoleucine          4.7        110           3
 K lysine              4.3        101           2
 L leucine             9.5        223           3
 M methionine          2.9         67           2
 N asparagine          3.4         80           2
 P proline             6.3        147           3
 Q glutamine           3.8         89           3
 R arginine            7.5        176           3
 S serine              7.1        165           5
 T threonine           5.0        118           3
 V valine              6.2        145           3
 W tryptophan          1.0         24           1
 Y tyrosine            2.7         63           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   calcium channel, voltage-dependent, N type, alpha 1B ... 
CACNA1A               0.583   calcium channel, alpha 1A subunit isoform 4 
CACNA1A               0.569   calcium channel, alpha 1A subunit isoform 3 
CACNA1E               0.482   calcium channel, voltage-dependent, R type, alpha 1E...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.159   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.158   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.157   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.157   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1D               0.157   calcium channel, voltage-dependent, L type, alpha 1D ...
CACNA1F               0.157   calcium channel, voltage-dependent, L type, alpha 1F...
CACNA1C               0.157   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.156   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.156   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.155   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1C               0.155   calcium channel, voltage-dependent, L type, alpha 1...
CACNA1S               0.151   calcium channel, voltage-dependent, L type, alpha 1...
SCN9A                 0.061   sodium channel, voltage-gated, type IX, alpha 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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