Guide to the Human Genome
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Name: HIVEP3 Sequence: fasta or formatted (2406aa) NCBI GI: 116089331
Description:

human immunodeficiency virus type I enhancer binding protein 3

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [2405aa] human immunodeficiency virus type I enhancer binding protein 3 b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6        159           2
 C cysteine            1.3         32           1
 D aspartate           2.9         70           2
 E glutamate           8.4        202           3
 F phenylalanine       2.1         50           2
 G glycine             6.7        162           3
 H histidine           3.6         87           2
 I isoleucine          2.1         51           2
 K lysine              5.8        139           3
 L leucine             8.4        202           2
 M methionine          1.4         34           2
 N asparagine          1.0         25           1
 P proline            13.5        326           3
 Q glutamine           4.4        106           3
 R arginine            5.7        136           2
 S serine             14.3        343           3
 T threonine           5.6        134           3
 V valine              3.9         93           2
 W tryptophan          0.6         14           1
 Y tyrosine            1.7         41           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   human immunodeficiency virus type I enhancer bindin... 
HIVEP3                0.999   human immunodeficiency virus type I enhancer bindin...
HIVEP2                0.209   human immunodeficiency virus type I enhancer bindin...
HIVEP1                0.143   human immunodeficiency virus type I enhancer bindin...
ZNF831                0.030   zinc finger protein 831 
FLJ22184              0.017   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.013   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.013   PREDICTED: hypothetical protein FLJ22184 
NACA                  0.011   nascent polypeptide-associated complex alpha subuni...
SALL2                 0.011   sal-like 2 
SRRM2                 0.010   splicing coactivator subunit SRm300 
GLTSCR1               0.010   glioma tumor suppressor candidate region gene 1 [Ho...
MLL2                  0.010   myeloid/lymphoid or mixed-lineage leukemia 2 
SALL3                 0.010   sal-like 3 
PCLO                  0.009   piccolo isoform 2 
PCLO                  0.009   piccolo isoform 1 
SALL1                 0.009   sal-like 1 isoform b 
SALL1                 0.009   sal-like 1 isoform a 
ZNF341                0.009   zinc finger protein 341 
ZNF853                0.009   zinc finger protein 853 
ZNF837                0.009   zinc finger protein 837 isoform 1 
ZNF837                0.009   zinc finger protein 837 isoform 2 
ZNF177                0.009   zinc finger protein 177 
ZNF236                0.009   zinc finger protein 236 
KIAA1522              0.009   hypothetical protein LOC57648 
SALL4                 0.009   sal-like 4 
MUC12                 0.009   PREDICTED: mucin 12 
RERE                  0.009   atrophin-1 like protein isoform b 
RERE                  0.009   atrophin-1 like protein isoform a 
RERE                  0.009   atrophin-1 like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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