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Search of human proteins with 239756116
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
(194 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756116 PREDICTED: hypothetical protein [Homo sapiens] 392 e-110
gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo ... 392 e-110
gi|20070107 orthodenticle homeobox 1 [Homo sapiens] 51 7e-07
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 48 6e-06
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 46 2e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens] 46 2e-05
gi|117938759 GNAS complex locus XLas [Homo sapiens] 45 3e-05
gi|111120318 NK6 transcription factor related, locus 1 [Homo sap... 44 7e-05
gi|189181750 human immunodeficiency virus type I enhancer bindin... 44 7e-05
gi|116089331 human immunodeficiency virus type I enhancer bindin... 44 7e-05
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 44 7e-05
gi|33946327 nucleoporin 214kDa [Homo sapiens] 44 1e-04
gi|222418647 mucin 7, secreted precursor [Homo sapiens] 44 1e-04
gi|222418649 mucin 7, secreted precursor [Homo sapiens] 44 1e-04
gi|222418645 mucin 7, secreted precursor [Homo sapiens] 44 1e-04
gi|19111150 angiomotin isoform 2 [Homo sapiens] 44 1e-04
gi|166064029 angiomotin isoform 1 [Homo sapiens] 44 1e-04
gi|23821044 zinc finger/RING finger 2 [Homo sapiens] 43 1e-04
gi|7662162 ALEX2 protein [Homo sapiens] 43 1e-04
gi|29540562 ALEX2 protein [Homo sapiens] 43 1e-04
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 43 2e-04
gi|19924099 synapsin I isoform Ia [Homo sapiens] 43 2e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 43 2e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 42 3e-04
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 42 3e-04
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 42 3e-04
gi|116256363 transmembrane protease, serine 13 [Homo sapiens] 42 3e-04
gi|55750053 atrophin-1 [Homo sapiens] 42 4e-04
gi|55750041 atrophin-1 [Homo sapiens] 42 4e-04
>gi|239756116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 194
Score = 392 bits (1008), Expect = e-110
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60
MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST
Sbjct: 1 MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60
Query: 61 LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA
Sbjct: 61 LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
Query: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP
Sbjct: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
Query: 181 RPSSTGYGSESRSR 194
RPSSTGYGSESRSR
Sbjct: 181 RPSSTGYGSESRSR 194
>gi|239744954 PREDICTED: hypothetical protein XP_002343343 [Homo
sapiens]
Length = 194
Score = 392 bits (1008), Expect = e-110
Identities = 194/194 (100%), Positives = 194/194 (100%)
Query: 1 MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60
MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST
Sbjct: 1 MAQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSST 60
Query: 61 LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA
Sbjct: 61 LPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
Query: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP
Sbjct: 121 GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
Query: 181 RPSSTGYGSESRSR 194
RPSSTGYGSESRSR
Sbjct: 181 RPSSTGYGSESRSR 194
>gi|20070107 orthodenticle homeobox 1 [Homo sapiens]
Length = 354
Score = 50.8 bits (120), Expect = 7e-07
Identities = 40/127 (31%), Positives = 53/127 (41%), Gaps = 12/127 (9%)
Query: 27 SLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAA 86
S PA++ + +RE E G+F+PP SS S S + ++PAAA
Sbjct: 105 SRPAKKKSSPVRESSGSESS--GQFTPPAVSSSA----------SSSSSASSSSANPAAA 152
Query: 87 GGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGA 146
G+P + PA W P+S + PAS S E A PS S A
Sbjct: 153 AAAGLGGNPVAAASSLSTPAASSIWSPASISPGSAPASVSVPEPLAAPSNTSCMQRSVAA 212
Query: 147 AAATATA 153
AATA A
Sbjct: 213 GAATAAA 219
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 47.8 bits (112), Expect = 6e-06
Identities = 43/170 (25%), Positives = 74/170 (43%), Gaps = 22/170 (12%)
Query: 6 RWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEP--PPPGEFSPPGDGSSTLPG 63
R PP SR+++ +P S + P L Q +P P P FS
Sbjct: 2408 RTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQS-------- 2459
Query: 64 GDPACLLKSCSPGLGTRSSPAAAGGGATSGSP----RVVTPEPAAPATQVSWPPSSARLL 119
CL+ +P G++S + A TS + + P P P + V PP+S
Sbjct: 2460 ---RCLIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPAS---- 2512
Query: 120 AGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
G PS A A P+ RS+ SS ++++++++ S ++ S++ ++S
Sbjct: 2513 TGAQQPS-ALAALQPAKERRSSSSSSSSSSSSSSSSSSSSSSSSSGSSSS 2561
Score = 33.1 bits (74), Expect = 0.15
Identities = 41/186 (22%), Positives = 59/186 (31%), Gaps = 30/186 (16%)
Query: 12 SDSSRVSTLLSP----RALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
SDS S + P + + P P +RE + EP P SS+ +
Sbjct: 2561 SDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSS 2620
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQV-------SWPPSSARLLA 120
S S + SS +++ ++S S +P PA P Q PP R
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSS----SPSPAKPGPQALPKPASPKKPPPGERRSR 2676
Query: 121 GPASP---------------SRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGS 165
P P R PS D+ + SS + G R+
Sbjct: 2677 SPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRR 2736
Query: 166 VTTSCR 171
T S R
Sbjct: 2737 ETPSPR 2742
Score = 32.7 bits (73), Expect = 0.20
Identities = 29/135 (21%), Positives = 51/135 (37%), Gaps = 17/135 (12%)
Query: 9 PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
P P S+ +P S + PH ++ K G PP G + P ++ +C
Sbjct: 821 PPPKQKSK-----TPSRQSHSSSSPHPKV---KSGTPPRQGSITSPQANEQSVTPQRRSC 872
Query: 69 LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLL--------- 119
S P L +R+ + G++ + TP +P+ S P ++
Sbjct: 873 FESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSG 932
Query: 120 AGPASPSRAEAQAWP 134
+ SPSR ++ P
Sbjct: 933 SSSPSPSRVTSRTTP 947
Score = 29.3 bits (64), Expect = 2.2
Identities = 38/136 (27%), Positives = 51/136 (37%), Gaps = 7/136 (5%)
Query: 39 EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
+DK + SP + SST G +P + +P L R + T S V
Sbjct: 338 KDKDKKEKSATRPSPSPERSST--GPEPP----APTPLLAERHGGSPQPLATTPLSQEPV 391
Query: 99 TPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATA-GSRR 157
P A T+ PP S L +S + P+ R A SS + A A GS R
Sbjct: 392 NPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHR 451
Query: 158 AAGSTTGSVTTSCRRA 173
S+ S S RA
Sbjct: 452 EISSSPTSKNRSHGRA 467
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 45.8 bits (107), Expect = 2e-05
Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 48/208 (23%)
Query: 27 SLPAEEPH---ARLREDKQGEPPPPGEFS------------------PPGDGSSTLPGGD 65
S P EP AR EP PPG S PPG GS +P G
Sbjct: 133 SHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQ 192
Query: 66 P-------------------ACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPA 106
P A LL S P R +P A A R PAA
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252
Query: 107 TQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSV 166
+ PP + LLA S + + A++ P + R +S A AGSR +
Sbjct: 253 S-AQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSR---APSLSPF 308
Query: 167 TTSCR----RALLNCALPRPSSTGYGSE 190
CR R+ LP P S G E
Sbjct: 309 PRRCRRRAERSPAGHGLPLPRSLSRGGE 336
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 45.8 bits (107), Expect = 2e-05
Identities = 57/208 (27%), Positives = 69/208 (33%), Gaps = 48/208 (23%)
Query: 27 SLPAEEPH---ARLREDKQGEPPPPGEFS------------------PPGDGSSTLPGGD 65
S P EP AR EP PPG S PPG GS +P G
Sbjct: 133 SHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPPGRGSGRVPRGQ 192
Query: 66 P-------------------ACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPA 106
P A LL S P R +P A A R PAA
Sbjct: 193 PEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRGRGGAERPAARG 252
Query: 107 TQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSV 166
+ PP + LLA S + + A++ P + R +S A AGSR +
Sbjct: 253 S-AQQPPLARLLLASAVSLAASLARSPPPLQPRLGSASPPRLAAPLAGSR---APSLSPF 308
Query: 167 TTSCR----RALLNCALPRPSSTGYGSE 190
CR R+ LP P S G E
Sbjct: 309 PRRCRRRAERSPAGHGLPLPRSLSRGGE 336
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 45.8 bits (107), Expect = 2e-05
Identities = 43/144 (29%), Positives = 56/144 (38%), Gaps = 27/144 (18%)
Query: 43 GEPPPPGEFSPPGDGSS--------------------TLPGGDPACLL---KSCSPGLGT 79
G P PG P G G++ +L PA LL K +PG
Sbjct: 179 GPGPGPGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVI 238
Query: 80 RSSP---AAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSV 136
++ P AAA + SP P PAAPA PP + LA P A P+V
Sbjct: 239 QTPPFVGAAAPPAPAAPSPPAA-PAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAV 297
Query: 137 PDRSADSSGAAAATATAGSRRAAG 160
P +A +G +A A A + A G
Sbjct: 298 PPPAAAQNGGSAGAAPAPAPAAGG 321
Score = 40.8 bits (94), Expect = 7e-04
Identities = 51/193 (26%), Positives = 65/193 (33%), Gaps = 36/193 (18%)
Query: 22 SPRALSLPAEEPHARLREDKQGEPP-------PPGEFSPPGDGSSTLPGGDPACLLKSCS 74
+P A S PA A PP PPG + P + +P PA S
Sbjct: 251 APAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVP--PPAAAQNGGS 308
Query: 75 PGLGTRSSPAAAGGGATSGSP-------------------RVVTPEPAAPATQVSWPPSS 115
G +PAA G SG P RVV P A T + P+S
Sbjct: 309 AGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASGPAS 368
Query: 116 --ARLLAGP----ASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
A ++ GP A PS A P P AA T R +TT + +
Sbjct: 369 TAASMVIGPTMQGALPSPAAVP--PPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIRAT 426
Query: 170 CRRALLNCALPRP 182
+L LP+P
Sbjct: 427 LTPTVLAPRLPQP 439
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/158 (27%), Positives = 57/158 (36%), Gaps = 25/158 (15%)
Query: 44 EPPPPGEFSPPGDGSS----------TLPGG--DPACLLKSCSPGLGTRSSPAAAGGGAT 91
EPPP G P G G +P G PA L+ G +P A
Sbjct: 88 EPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGSCAPVPAAAAVA 147
Query: 92 SGSPRVVTPEPAAPATQVSWPPSSARLLAGPA---SPSRAEAQAWPSVPDRSADSSGAAA 148
+G P PA PA +AR GP P P+ P + +G+A
Sbjct: 148 AGP----EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAAQTLNGSA- 202
Query: 149 ATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTG 186
A S AA S+ + ALL LP+P++ G
Sbjct: 203 --ALLNSHHAAAPAV-SLVNNGPAALL--PLPKPAAPG 235
Score = 32.7 bits (73), Expect = 0.20
Identities = 33/111 (29%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 63 GGDPACLLKSCSPGLGTRSSPAAA---GGGATSG----SPR--VVTPEPAAPATQVSWPP 113
G PA + +PG PA GGG SPR +V PA PA ++ PP
Sbjct: 72 GAGPAAPAEG-APGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPP 130
Query: 114 SSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTG 164
+ P + A A P A +G AA A AG G G
Sbjct: 131 EGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPG 181
Score = 30.4 bits (67), Expect = 0.99
Identities = 25/109 (22%), Positives = 41/109 (37%), Gaps = 5/109 (4%)
Query: 75 PGLGTRSSPAAAGGGATSGSPRVVTPEPAA---PATQVSWPPSSARLLAGPASPSRAEAQ 131
P S PAA A + +P P PA P + PP++A + PA+ +
Sbjct: 250 PAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSA 309
Query: 132 AWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALP 180
+ P + + G A + G AA + V + ++ A P
Sbjct: 310 G--AAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPP 356
Score = 29.6 bits (65), Expect = 1.7
Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 11/93 (11%)
Query: 72 SCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQ 131
S SP + PAA GA +P P PA A P GP SP R
Sbjct: 64 SGSPAGAAGAGPAAPAEGAPGAAPE---PPPAGRAR----PGGGGPQRPGPPSPRRPLVP 116
Query: 132 AWPSVPDRS----ADSSGAAAATATAGSRRAAG 160
A P+ P + S + A A + AAG
Sbjct: 117 AGPAPPAAKLRPPPEGSAGSCAPVPAAAAVAAG 149
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 45.4 bits (106), Expect = 3e-05
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
Query: 45 PPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAA 104
P P + P D S DP + P G ++PAA + +P +
Sbjct: 399 PADPDSGATPEDPDSGTAPADPDSGAFAADPDSG--AAPAAPADPDSGAAPDAPADPDSG 456
Query: 105 PATQVSWPPSSARLLAGPASPSRAEAQA---WPSVPDRSADSSGAAAATATAGSRRAAGS 161
A P + PA+P+ AE +A P+ PD A ++ AA+AT A RRAA +
Sbjct: 457 AAPDAPADPDAGAAPEAPAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASA 516
Query: 162 TTGS 165
S
Sbjct: 517 APAS 520
Score = 28.1 bits (61), Expect = 4.9
Identities = 38/174 (21%), Positives = 60/174 (34%), Gaps = 27/174 (15%)
Query: 11 PSDSSRVSTLLSPRALSLPAE--EPHARLREDKQGEPP----PPGEFSPPGDGSSTLPGG 64
P+D + P + + PA +P + D +P P P + P
Sbjct: 417 PADPDSGAFAADPDSGAAPAAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAA 476
Query: 65 DPACLLKSC-----SPGLGTRSSPAA-----------AGGGATSGSPRVVTPEPAAPATQ 108
A ++ +P G ++PAA A SG+ R + P +P Q
Sbjct: 477 PAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASAAPASGARRKIHLRPPSPEIQ 536
Query: 109 VSWP----PSSARLLAGPASPSRAEAQAW-PSVPDRSADSSGAAAATATAGSRR 157
+ P P+ A G + SR + V DSSG + T+G R
Sbjct: 537 AADPPTPRPTRASAWRGKSESSRGRRVYYDEGVASSDDDSSGDESDDGTSGCLR 590
>gi|111120318 NK6 transcription factor related, locus 1 [Homo
sapiens]
Length = 367
Score = 44.3 bits (103), Expect = 7e-05
Identities = 45/146 (30%), Positives = 64/146 (43%), Gaps = 23/146 (15%)
Query: 47 PPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRS----SPAAAGGGATSGSPRVVTPEP 102
PP PP SS+ P SP LGT + P A GG ++ GSP P+
Sbjct: 41 PPLPAGPPSSSSSSSSSSSP-------SPPLGTHNPGGLKPPATGGLSSLGSP----PQQ 89
Query: 103 AAPATQ------VSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
+ AT +S P S + +G A PS + + + S ++ SS +AAA A A +
Sbjct: 90 LSAATPHGINDILSRP--SMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAA 147
Query: 157 RAAGSTTGSVTTSCRRALLNCALPRP 182
AA S G + R + L+ P P
Sbjct: 148 AAASSPAGLLAGLPRFSSLSPPPPPP 173
>gi|189181750 human immunodeficiency virus type I enhancer binding
protein 3 b [Homo sapiens]
Length = 2405
Score = 44.3 bits (103), Expect = 7e-05
Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
PP+ S SP+ S PA EP A P PPG PG G LP G P
Sbjct: 1979 PPLARKHSLTKNDSSPQRCS-PAREPQA-------SAPSPPGLHVDPGRGMGALPCGSPR 2030
Query: 68 CLLKSCS-PGLGTRSSPAA-----AGGGATSGSPRVVTPEPAAPATQVSWPPSSAR---- 117
L + LG +P A G G PR +P Q PP SA
Sbjct: 2031 LQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGLPRYSPTRRWSPG-QAESPPRSAPPGKW 2089
Query: 118 LLAGPASPSRAE 129
LAGP SPS E
Sbjct: 2090 ALAGPGSPSAGE 2101
>gi|116089331 human immunodeficiency virus type I enhancer binding
protein 3 [Homo sapiens]
Length = 2406
Score = 44.3 bits (103), Expect = 7e-05
Identities = 45/132 (34%), Positives = 50/132 (37%), Gaps = 19/132 (14%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
PP+ S SP+ S PA EP A P PPG PG G LP G P
Sbjct: 1979 PPLARKHSLTKNDSSPQRCS-PAREPQA-------SAPSPPGLHVDPGRGMGALPCGSPR 2030
Query: 68 CLLKSCS-PGLGTRSSPAA-----AGGGATSGSPRVVTPEPAAPATQVSWPPSSAR---- 117
L + LG +P A G G PR +P Q PP SA
Sbjct: 2031 LQLSPLTLCPLGRELAPRAHVLSKLEGTTDPGLPRYSPTRRWSPG-QAESPPRSAPPGKW 2089
Query: 118 LLAGPASPSRAE 129
LAGP SPS E
Sbjct: 2090 ALAGPGSPSAGE 2101
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 44.3 bits (103), Expect = 7e-05
Identities = 42/150 (28%), Positives = 56/150 (37%), Gaps = 23/150 (15%)
Query: 22 SPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRS 81
SPR P P R R + PPPP +S SP R
Sbjct: 310 SPRRRPSPRRRPSPRRRTPPRRMPPPPRH-------------------RRSRSPVRRRRR 350
Query: 82 SPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWP--SVPDR 139
S A+ G ++S S P P + S PP R L+ ASP R + P + P +
Sbjct: 351 SSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPK 410
Query: 140 SADSSGAAAATATAGSRRAA--GSTTGSVT 167
+ S + T SR + G T+G VT
Sbjct: 411 TRHSPTPQQSNRTRKSRVSVSPGRTSGKVT 440
Score = 29.3 bits (64), Expect = 2.2
Identities = 43/166 (25%), Positives = 57/166 (34%), Gaps = 22/166 (13%)
Query: 6 RWPPVPSDSSRV-STLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGG 64
R+ P P R S P+ + P+ P R+ PPP SP S
Sbjct: 603 RYSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHS----PPPKQRSSPVTKRRSPSLSS 658
Query: 65 DPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPP-----SSARLL 119
K SP TR + + S SPR P AP T S PP SS+
Sbjct: 659 KHR---KGSSPSRSTREARSPQPNKRHSPSPR-----PRAPQTSSSPPPVRRGASSSPQR 710
Query: 120 AGPASPSRAEAQAWPSVPD----RSADSSGAAAATATAGSRRAAGS 161
SPS + P+ + A S + + SR +GS
Sbjct: 711 RQSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRVSSSRSVSGS 756
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 43.5 bits (101), Expect = 1e-04
Identities = 49/187 (26%), Positives = 78/187 (41%), Gaps = 28/187 (14%)
Query: 9 PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
P S+S ++ S ALS A + + + PP FS PG + T A
Sbjct: 1546 PAVSNSGTAASSTSLVALSAEATPATTGVPDARTEAVPPASSFSVPGQTAVT------AA 1599
Query: 69 LLKSCSP-GLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSR 127
+ S P + T S+P A S + +V P P+A A S + + A P P+
Sbjct: 1600 AISSAGPVAVETSSTPIA------SSTTSIVAPGPSAEAAAFGTVTSGSSVFAQP--PAA 1651
Query: 128 AEAQAWPSVPDRSADSSGAA-----AATATAGSRRAAGSTTGSVTTSCRRALLNCALPRP 182
+ + A+ + + +A + A A +TA S G TGS ++ A P+
Sbjct: 1652 SSSSAFNQLTNNTATAPSATPVFGQVAASTAPS--LFGQQTGSTASTA------AATPQV 1703
Query: 183 SSTGYGS 189
SS+G+ S
Sbjct: 1704 SSSGFSS 1710
Score = 32.7 bits (73), Expect = 0.20
Identities = 39/162 (24%), Positives = 63/162 (38%), Gaps = 9/162 (5%)
Query: 10 VPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACL 69
+P S+ S ++S SL A + + PP PP ++ LP P
Sbjct: 1414 LPVTSAGSSGVISFGGTSLSAGKTSFSFGSQQTNSTVPPSA-PPPTTAATPLPTSFPTLS 1472
Query: 70 LKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP-----AAPATQVSWPPSSARLLAGPAS 124
S T S P +AG + + +P +A A + SA+L P
Sbjct: 1473 FGSLLSSATTPSLPMSAGRSTEEATSSALPEKPGDSEVSASAASLLEEQQSAQLPQAPPQ 1532
Query: 125 PSRAEAQAWPSVPDRSADSSGAAAATAT--AGSRRAAGSTTG 164
S + + P + + +SG AA++ + A S A +TTG
Sbjct: 1533 TSDS-VKKEPVLAQPAVSNSGTAASSTSLVALSAEATPATTG 1573
Score = 32.0 bits (71), Expect = 0.34
Identities = 44/179 (24%), Positives = 64/179 (35%), Gaps = 16/179 (8%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P PS + S S P P A + KQG + S P S L GD A
Sbjct: 1132 PATPSTAMGSSVPYSTAKTPHPVLTPVAA-NQAKQGSLINSLKPSGPTPASGQLSSGDKA 1190
Query: 68 C-------LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLA 120
+ S G S P + T + ++TP P++ T S + +
Sbjct: 1191 SGTAKIETAVTSTPSASGQFSKPFSFSPSGTGFNFGIITPTPSSNFTAAQGATPSTKESS 1250
Query: 121 GPA--SPSRAEAQAWPSVPDRSADSSGAAAATATAG------SRRAAGSTTGSVTTSCR 171
P S ++ ++P+ S S +A+ T G SR A S T TTS +
Sbjct: 1251 QPDAFSSGGGSKPSYEAIPESSPPSGITSASNTTPGEPAASSSRPVAPSGTALSTTSSK 1309
Score = 30.0 bits (66), Expect = 1.3
Identities = 37/144 (25%), Positives = 51/144 (35%), Gaps = 15/144 (10%)
Query: 3 QAERWPPVPSDSSRVSTLL-SPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTL 61
+ ER P P + T +P+ L A A L PP + P S L
Sbjct: 423 EGERQPKSPGSTPTTPTSSQAPQKLDASAAAAPASL---------PPSSPAAPIATFSLL 473
Query: 62 PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAG 121
P G + S L + ++ +SGS P+T PPS A L
Sbjct: 474 PAGGAPTVFSFGSSSLKSSATVTGEPPSYSSGSDSSKAAPGPGPSTFSFVPPSKASL--- 530
Query: 122 PASPSRAEAQAWPSVPDRSADSSG 145
+P+ A + PS S SSG
Sbjct: 531 --APTPAASPVAPSAASFSFGSSG 552
Score = 27.3 bits (59), Expect = 8.4
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 9/106 (8%)
Query: 79 TRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPD 138
T++S +G T+ P V+ P T + S +A PA+ S + + S+P
Sbjct: 1363 TKTSGVPSGFNFTA--PPVLGKHTEPPVTSSATTTS----VAPPAATSTSSTAVFGSLPV 1416
Query: 139 RSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
SA SSG + G+ +AG T+ S + + + + P P++
Sbjct: 1417 TSAGSSG---VISFGGTSLSAGKTSFSFGSQQTNSTVPPSAPPPTT 1459
>gi|222418647 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P PS S+ T +P S + P + + PP + P SS+ P A
Sbjct: 177 PAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTA 236
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP----AAPATQVSWPPSSARLLAGPA 123
+ SS A A +P T +P A P T + P SA A P+
Sbjct: 237 APPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTT 168
SP+ E A P S+ ++ A + T S TT SVTT
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTSET--SAAPTHQTTTSVTT 339
Score = 34.7 bits (78), Expect = 0.052
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 39 EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
+D PP P +P SS P A +P T++ P+++ T+ +P
Sbjct: 163 QDTTAAPPTPSATTPAPPSSSAPPETTAA----PPTPSATTQAPPSSSAPPETTAAP--- 215
Query: 99 TPEPAAPATQVSWPPSSA---RLLAGPASPSRAEAQAWPS--VPDRSADSSGAAAATATA 153
P PAT PPSS+ A P +PS S P+ +A +A T
Sbjct: 216 ---PTPPAT-TPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP 271
Query: 154 GSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
S A TT + T + P P T
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSPAPQET 303
Score = 34.3 bits (77), Expect = 0.068
Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 24/183 (13%)
Query: 11 PSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLL 70
PS S++++TL P LP RE+ + ++ P PA
Sbjct: 117 PSASTKITTL--PNVTFLPQNATTISSREN----------VNTSSSVATLAPVNSPAPQD 164
Query: 71 KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEA 130
+ +P + ++PA +S +P T P P+ PPSS+ A P A
Sbjct: 165 TTAAPPTPSATTPAPP----SSSAPPETTAAPPTPSATTQAPPSSS------APPETTAA 214
Query: 131 QAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
P + SS A T A +A TT + +S P PS+T
Sbjct: 215 PPTPPATTPAPPSSSAPPETTAAPPTPSA--TTPAPLSSSAPPETTAVPPTPSATTLDPS 272
Query: 191 SRS 193
S S
Sbjct: 273 SAS 275
Score = 32.0 bits (71), Expect = 0.34
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 6/161 (3%)
Query: 9 PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
PV S + + +T P + P + + PP P + SS P A
Sbjct: 156 PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA- 214
Query: 69 LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRA 128
+P T + P+++ T+ +P TP PA S P + S +
Sbjct: 215 ---PPTPPATTPAPPSSSAPPETTAAPP--TPSATTPAPLSSSAPPETTAVPPTPSATTL 269
Query: 129 EAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
+ + + P+ +A +A T S A TT + T+
Sbjct: 270 DPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITT 310
>gi|222418649 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P PS S+ T +P S + P + + PP + P SS+ P A
Sbjct: 177 PAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTA 236
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP----AAPATQVSWPPSSARLLAGPA 123
+ SS A A +P T +P A P T + P SA A P+
Sbjct: 237 APPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTT 168
SP+ E A P S+ ++ A + T S TT SVTT
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTSET--SAAPTHQTTTSVTT 339
Score = 34.7 bits (78), Expect = 0.052
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 39 EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
+D PP P +P SS P A +P T++ P+++ T+ +P
Sbjct: 163 QDTTAAPPTPSATTPAPPSSSAPPETTAA----PPTPSATTQAPPSSSAPPETTAAP--- 215
Query: 99 TPEPAAPATQVSWPPSSA---RLLAGPASPSRAEAQAWPS--VPDRSADSSGAAAATATA 153
P PAT PPSS+ A P +PS S P+ +A +A T
Sbjct: 216 ---PTPPAT-TPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP 271
Query: 154 GSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
S A TT + T + P P T
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSPAPQET 303
Score = 34.3 bits (77), Expect = 0.068
Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 24/183 (13%)
Query: 11 PSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLL 70
PS S++++TL P LP RE+ + ++ P PA
Sbjct: 117 PSASTKITTL--PNVTFLPQNATTISSREN----------VNTSSSVATLAPVNSPAPQD 164
Query: 71 KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEA 130
+ +P + ++PA +S +P T P P+ PPSS+ A P A
Sbjct: 165 TTAAPPTPSATTPAPP----SSSAPPETTAAPPTPSATTQAPPSSS------APPETTAA 214
Query: 131 QAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
P + SS A T A +A TT + +S P PS+T
Sbjct: 215 PPTPPATTPAPPSSSAPPETTAAPPTPSA--TTPAPLSSSAPPETTAVPPTPSATTLDPS 272
Query: 191 SRS 193
S S
Sbjct: 273 SAS 275
Score = 32.0 bits (71), Expect = 0.34
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 6/161 (3%)
Query: 9 PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
PV S + + +T P + P + + PP P + SS P A
Sbjct: 156 PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA- 214
Query: 69 LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRA 128
+P T + P+++ T+ +P TP PA S P + S +
Sbjct: 215 ---PPTPPATTPAPPSSSAPPETTAAPP--TPSATTPAPLSSSAPPETTAVPPTPSATTL 269
Query: 129 EAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
+ + + P+ +A +A T S A TT + T+
Sbjct: 270 DPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITT 310
>gi|222418645 mucin 7, secreted precursor [Homo sapiens]
Length = 377
Score = 43.5 bits (101), Expect = 1e-04
Identities = 45/165 (27%), Positives = 62/165 (37%), Gaps = 6/165 (3%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P PS S+ T +P S + P + + PP + P SS+ P A
Sbjct: 177 PAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAAPPTPPATTPAPPSSSAPPETTA 236
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP----AAPATQVSWPPSSARLLAGPA 123
+ SS A A +P T +P A P T + P SA A P+
Sbjct: 237 APPTPSATTPAPLSSSAPPETTAVPPTPSATTLDPSSASAPPETTAAPPTPSATTPAPPS 296
Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTT 168
SP+ E A P S+ ++ A + T S TT SVTT
Sbjct: 297 SPAPQETTAAPITTPNSSPTTLAPDTSET--SAAPTHQTTTSVTT 339
Score = 34.7 bits (78), Expect = 0.052
Identities = 39/152 (25%), Positives = 56/152 (36%), Gaps = 16/152 (10%)
Query: 39 EDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVV 98
+D PP P +P SS P A +P T++ P+++ T+ +P
Sbjct: 163 QDTTAAPPTPSATTPAPPSSSAPPETTAA----PPTPSATTQAPPSSSAPPETTAAP--- 215
Query: 99 TPEPAAPATQVSWPPSSA---RLLAGPASPSRAEAQAWPS--VPDRSADSSGAAAATATA 153
P PAT PPSS+ A P +PS S P+ +A +A T
Sbjct: 216 ---PTPPAT-TPAPPSSSAPPETTAAPPTPSATTPAPLSSSAPPETTAVPPTPSATTLDP 271
Query: 154 GSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
S A TT + T + P P T
Sbjct: 272 SSASAPPETTAAPPTPSATTPAPPSSPAPQET 303
Score = 34.3 bits (77), Expect = 0.068
Identities = 44/183 (24%), Positives = 66/183 (36%), Gaps = 24/183 (13%)
Query: 11 PSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLL 70
PS S++++TL P LP RE+ + ++ P PA
Sbjct: 117 PSASTKITTL--PNVTFLPQNATTISSREN----------VNTSSSVATLAPVNSPAPQD 164
Query: 71 KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEA 130
+ +P + ++PA +S +P T P P+ PPSS+ A P A
Sbjct: 165 TTAAPPTPSATTPAPP----SSSAPPETTAAPPTPSATTQAPPSSS------APPETTAA 214
Query: 131 QAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
P + SS A T A +A TT + +S P PS+T
Sbjct: 215 PPTPPATTPAPPSSSAPPETTAAPPTPSA--TTPAPLSSSAPPETTAVPPTPSATTLDPS 272
Query: 191 SRS 193
S S
Sbjct: 273 SAS 275
Score = 32.0 bits (71), Expect = 0.34
Identities = 34/161 (21%), Positives = 58/161 (36%), Gaps = 6/161 (3%)
Query: 9 PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
PV S + + +T P + P + + PP P + SS P A
Sbjct: 156 PVNSPAPQDTTAAPPTPSATTPAPPSSSAPPETTAAPPTPSATTQAPPSSSAPPETTAA- 214
Query: 69 LLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRA 128
+P T + P+++ T+ +P TP PA S P + S +
Sbjct: 215 ---PPTPPATTPAPPSSSAPPETTAAPP--TPSATTPAPLSSSAPPETTAVPPTPSATTL 269
Query: 129 EAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTS 169
+ + + P+ +A +A T S A TT + T+
Sbjct: 270 DPSSASAPPETTAAPPTPSATTPAPPSSPAPQETTAAPITT 310
>gi|19111150 angiomotin isoform 2 [Homo sapiens]
Length = 675
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 58 SSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAP--ATQVSWPPSS 115
++T+ P + + +P SPA A A + SP PAA A+ + PS+
Sbjct: 495 TTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSA 554
Query: 116 ARLLA---GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRR 172
A A PA+P+ A A VP +A + A A T S A T T
Sbjct: 555 AAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTP--- 611
Query: 173 ALLNCALPRPSSTGYG 188
A+ +P +TG G
Sbjct: 612 AVAQAEVPASPATGPG 627
Score = 30.4 bits (67), Expect = 0.99
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 78 GTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVP 137
GT S+ AA + +P V AA T + ++ + A P + + A A A + P
Sbjct: 460 GTESNKTAAVAPISVPAP-VAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAP 518
Query: 138 DRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRAL 174
S AAATA A S AAG + + + A+
Sbjct: 519 -----SPATAAATAAAVSPAAAGQIPAAASVASAAAV 550
>gi|166064029 angiomotin isoform 1 [Homo sapiens]
Length = 1084
Score = 43.5 bits (101), Expect = 1e-04
Identities = 38/136 (27%), Positives = 55/136 (40%), Gaps = 8/136 (5%)
Query: 58 SSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAP--ATQVSWPPSS 115
++T+ P + + +P SPA A A + SP PAA A+ + PS+
Sbjct: 904 TTTMVAAAPVAVAAAAAPAAAAAPSPATAAATAAAVSPAAAGQIPAAASVASAAAVAPSA 963
Query: 116 ARLLA---GPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRR 172
A A PA+P+ A A VP +A + A A T S A T T
Sbjct: 964 AAAAAVQVAPAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTP--- 1020
Query: 173 ALLNCALPRPSSTGYG 188
A+ +P +TG G
Sbjct: 1021 AVAQAEVPASPATGPG 1036
Score = 30.4 bits (67), Expect = 0.99
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 6/97 (6%)
Query: 78 GTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVP 137
GT S+ AA + +P V AA T + ++ + A P + + A A A + P
Sbjct: 869 GTESNKTAAVAPISVPAP-VAAAATAAAITATAATITTTMVAAAPVAVAAAAAPAAAAAP 927
Query: 138 DRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRAL 174
S AAATA A S AAG + + + A+
Sbjct: 928 -----SPATAAATAAAVSPAAAGQIPAAASVASAAAV 959
>gi|23821044 zinc finger/RING finger 2 [Homo sapiens]
Length = 242
Score = 43.1 bits (100), Expect = 1e-04
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 1/111 (0%)
Query: 80 RSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDR 139
+S PAAA G + S + + A + AR A P++ + PS
Sbjct: 5 QSGPAAANGRTRAYSGSDLPSSSSGGANGTAGGGGGARAAAAGRFPAQVPSAHQPSASGG 64
Query: 140 SADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSE 190
+A ++ A AA A SR + G GSV + R A ++P SS YGS+
Sbjct: 65 AAAAAAAPAAPAAPRSR-SLGGAVGSVASGARAAQSPFSIPNSSSGPYGSQ 114
>gi|7662162 ALEX2 protein [Homo sapiens]
Length = 632
Score = 43.1 bits (100), Expect = 1e-04
Identities = 45/181 (24%), Positives = 66/181 (36%), Gaps = 22/181 (12%)
Query: 21 LSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTR 80
++P A S A+ ++ G P S G ++ P + LG
Sbjct: 98 VAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIAPPPGV-----TEALGAA 152
Query: 81 SSPAAAGGGATSGSPR-------------VVTPEPAAPATQVSWP----PSSARLLAGPA 123
+PA AG + +PR VV E AAP P P+ G A
Sbjct: 153 EAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVA 212
Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPS 183
SP+ A P+ P +A +GAA + T+GS R A S A+P+ +
Sbjct: 213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKAT 272
Query: 184 S 184
S
Sbjct: 273 S 273
>gi|29540562 ALEX2 protein [Homo sapiens]
Length = 632
Score = 43.1 bits (100), Expect = 1e-04
Identities = 45/181 (24%), Positives = 66/181 (36%), Gaps = 22/181 (12%)
Query: 21 LSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTR 80
++P A S A+ ++ G P S G ++ P + LG
Sbjct: 98 VAPAASSAEAQSGAGSQAQEADGAGVGPKAESVVGAAMASAIAPPPGV-----TEALGAA 152
Query: 81 SSPAAAGGGATSGSPR-------------VVTPEPAAPATQVSWP----PSSARLLAGPA 123
+PA AG + +PR VV E AAP P P+ G A
Sbjct: 153 EAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVA 212
Query: 124 SPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPS 183
SP+ A P+ P +A +GAA + T+GS R A S A+P+ +
Sbjct: 213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPGTSAAKKATPGAHTGAIPKAT 272
Query: 184 S 184
S
Sbjct: 273 S 273
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 42.7 bits (99), Expect = 2e-04
Identities = 55/182 (30%), Positives = 70/182 (38%), Gaps = 20/182 (10%)
Query: 15 SRVSTLLSPRALSLPAEEPHARLR--EDKQGEPPPPGEFSPPGDGSSTLPGGDP--ACLL 70
S + L P SL P A L P SP G S T P G P A L
Sbjct: 144 STAAALTMPSRASLTRTPPRASLTMTPSTASLTRTPPRASPTGMPSRTSPTGMPSTASLT 203
Query: 71 KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGP--ASP--- 125
K S TR+ A+ +G+P +P + P +S PS+A L+ P ASP
Sbjct: 204 KMDSTASITRTLSRAS----PTGTPPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGM 259
Query: 126 -SRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
SR S + S + A+ T RA+ S T S + R LPR S
Sbjct: 260 LSRTSLTKMDSTASITRTPSRPSTASPTGTPSRASLSMTPSTASLMR------MLPRASP 313
Query: 185 TG 186
TG
Sbjct: 314 TG 315
Score = 39.3 bits (90), Expect = 0.002
Identities = 40/147 (27%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 48 PGEFSPPGDGSSTLPGGDPACLLKSCSP------GLGTRSSPAAAGGGAT-SGSPRVVT- 99
P SP G S+ P G P+ + SP GL + +SP A+ +G+P +
Sbjct: 344 PSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPTGTPPRASPTGTPSTASL 403
Query: 100 ---PEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
P A+P +S +S + ASP+R +A P+ A +G + + G++
Sbjct: 404 TRKPPRASPTGMLS--RTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQ 461
Query: 157 RAAGSTTGSVTTSCRRALLNCALPRPS 183
A S TGS +T+ + A P S
Sbjct: 462 STA-SPTGSPSTASPTGSPSTASPTGS 487
Score = 37.0 bits (84), Expect = 0.011
Identities = 47/184 (25%), Positives = 69/184 (37%), Gaps = 17/184 (9%)
Query: 2 AQAERWPPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTL 61
A R PP S + +S S + A R G PP SP G S
Sbjct: 401 ASLTRKPPRASPTGMLSRT-SITKMDSTASPTRTPPRASPTGTPP---RASPTGTPSRAS 456
Query: 62 PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARL--L 119
P G + + SP SP+ A + +GSP +P + ++ PS A L +
Sbjct: 457 PTGTQS----TASP----TGSPSTA---SPTGSPSTASPTGSPSRASLTRTPSRASLTKM 505
Query: 120 AGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCAL 179
AS +R ++A P+ +A +G+ + GS A T S R +L
Sbjct: 506 ESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAALTRTPSRASLTRTPSRASL 565
Query: 180 PRPS 183
PS
Sbjct: 566 TTPS 569
Score = 34.7 bits (78), Expect = 0.052
Identities = 53/198 (26%), Positives = 65/198 (32%), Gaps = 24/198 (12%)
Query: 9 PVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPAC 68
P SR S +P SL A L G P P S T G P
Sbjct: 3 PPTRTPSRASPTRTPSTASLTGTPSRASLT----GTPSTASLMGTPSRASLT--GTPPRA 56
Query: 69 LLKSCSPGLGTRSSPAAAGGGATSGSPRVV-TPEPAA--------------PATQVSWPP 113
LK + SP+ A S + TP A+ P + P
Sbjct: 57 SLKGTTSMASLMVSPSRASLTRMQSSSLLTRTPSMASLKRMPPRASRTRTLPRASLMRRP 116
Query: 114 SSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRA 173
S+A L SPSRA PS S S AAA T + + S+T + A
Sbjct: 117 STASLTR---SPSRASLTTTPSRASLSMTPSTAAALTMPSRASLTRTPPRASLTMTPSTA 173
Query: 174 LLNCALPRPSSTGYGSES 191
L PR S TG S +
Sbjct: 174 SLTRTPPRASPTGMPSRT 191
Score = 32.3 bits (72), Expect = 0.26
Identities = 47/181 (25%), Positives = 61/181 (33%), Gaps = 21/181 (11%)
Query: 15 SRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTL--PGGDPACLL-- 70
SR S SP SL A G PP P S T P P +L
Sbjct: 363 SRASPTGSPSTASLTGLSSTA----SPTGTPPRASPTGTPSTASLTRKPPRASPTGMLSR 418
Query: 71 ----KSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPA-TQVSWPPSSARLLAGPASP 125
K S TR+ P A+ G + TP A+P TQ + P+ SP
Sbjct: 419 TSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTGTQSTASPTG--------SP 470
Query: 126 SRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
S A PS + S A+ + + +T S+T + RA S T
Sbjct: 471 STASPTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPT 530
Query: 186 G 186
G
Sbjct: 531 G 531
Score = 27.7 bits (60), Expect = 6.4
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 22/146 (15%)
Query: 54 PGDGSSTLPGGDPACLLKSCSPGLGT--RSSPAAAGGGATSGSPRVVTPEPAA-----PA 106
P S+ P G P+ S +P + R P A+ G S + A+ P
Sbjct: 278 PSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTPPR 337
Query: 107 TQVSWPPSSARLLAGPAS------PSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAG 160
++ PS A P++ PSRA PS +A +G ++ + G+ A
Sbjct: 338 ASITRTPSRASPTGKPSTASPTGTPSRASPTGSPS----TASLTGLSSTASPTGTPPRA- 392
Query: 161 STTGSVTTSCRRALLNCALPRPSSTG 186
S TG+ +T A L PR S TG
Sbjct: 393 SPTGTPST----ASLTRKPPRASPTG 414
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 42.7 bits (99), Expect = 2e-04
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 38 REDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAA----AGGGATSG 93
R+ Q PP + PP G PG P + P L R P +G G +G
Sbjct: 446 RQTSQQPAGPPAQQRPPPQGGPPQPGPGP----QRQGPPLQQRPPPQGQQHLSGLGPPAG 501
Query: 94 SP---RVVTP--EPAAPATQVSWPP-----SSARLLAGPASPSRAEAQAWPSVPDRSADS 143
SP R+ +P P PA+Q + P S + GP +P A A PS P R A
Sbjct: 502 SPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS-PQRQAGP 560
Query: 144 SGAAAATATAGSR--RAAGSTTG 164
A T+ +G +A+G+ G
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPG 583
Score = 37.7 bits (86), Expect = 0.006
Identities = 43/159 (27%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 31 EEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGA 90
+ P + ++ G PP G P S T PA + G G +S P A G GA
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGA 542
Query: 91 TSGSPRVVTPEPAAPATQ-VSWPPSSAR--LLAGPASPSRAEAQAWPSVPDRSADSSGAA 147
P P PA+P+ Q + PP + R ++GPA P + A
Sbjct: 543 ----PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGP 597
Query: 148 AATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTG 186
A S+ TG TT PRPS G
Sbjct: 598 AGPTRQASQAGPVPRTGPPTTQ---------QPRPSGPG 627
Score = 35.4 bits (80), Expect = 0.031
Identities = 41/177 (23%), Positives = 59/177 (33%), Gaps = 13/177 (7%)
Query: 15 SRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCS 74
S S P + + P + R G P P PP S G P ++
Sbjct: 510 SPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569
Query: 75 PGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVS--------WPPSSARLLAGPASPS 126
G + A GG P P PA P Q S PP++ + P+ P
Sbjct: 570 SGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPRTGPPTTQQ--PRPSGPG 627
Query: 127 RAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPS 183
A + P + + + A A G + + S+T + L A PRPS
Sbjct: 628 PA-GRPKPQLAQKPSQDVPPPATAAAGGPPHPQLNKSQSLTNAFN--LPEPAPPRPS 681
Score = 32.7 bits (73), Expect = 0.20
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 42 QGEPPPPGEFSP---PGDGSSTL---PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSP 95
Q PPPPG SP PG G++T G PA + SPG ++ GGG S
Sbjct: 29 QPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPG-------SSGGGGFFSSLS 81
Query: 96 RVVTPEPAAPATQVS 110
V AA A S
Sbjct: 82 NAVKQTTAAAAATFS 96
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 42.7 bits (99), Expect = 2e-04
Identities = 43/143 (30%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 38 REDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAA----AGGGATSG 93
R+ Q PP + PP G PG P + P L R P +G G +G
Sbjct: 446 RQTSQQPAGPPAQQRPPPQGGPPQPGPGP----QRQGPPLQQRPPPQGQQHLSGLGPPAG 501
Query: 94 SP---RVVTP--EPAAPATQVSWPP-----SSARLLAGPASPSRAEAQAWPSVPDRSADS 143
SP R+ +P P PA+Q + P S + GP +P A A PS P R A
Sbjct: 502 SPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPS-PQRQAGP 560
Query: 144 SGAAAATATAGSR--RAAGSTTG 164
A T+ +G +A+G+ G
Sbjct: 561 PQATRQTSVSGPAPPKASGAPPG 583
Score = 37.7 bits (86), Expect = 0.006
Identities = 43/159 (27%), Positives = 57/159 (35%), Gaps = 17/159 (10%)
Query: 31 EEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGA 90
+ P + ++ G PP G P S T PA + G G +S P A G GA
Sbjct: 483 QRPPPQGQQHLSGLGPPAGSPLPQRLPSPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGA 542
Query: 91 TSGSPRVVTPEPAAPATQ-VSWPPSSAR--LLAGPASPSRAEAQAWPSVPDRSADSSGAA 147
P P PA+P+ Q + PP + R ++GPA P + A
Sbjct: 543 ----PPAARP-PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGP 597
Query: 148 AATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSSTG 186
A S+ TG TT PRPS G
Sbjct: 598 AGPTRQASQAGPVPRTGPPTTQ---------QPRPSGPG 627
Score = 33.1 bits (74), Expect = 0.15
Identities = 24/96 (25%), Positives = 30/96 (31%)
Query: 15 SRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCS 74
S S P + + P + R G P P PP S G P ++
Sbjct: 510 SPTSAPQQPASQAAPPTQGQGRQSRPVAGGPGAPPAARPPASPSPQRQAGPPQATRQTSV 569
Query: 75 PGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVS 110
G + A GG P P PA P Q S
Sbjct: 570 SGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQAS 605
Score = 32.7 bits (73), Expect = 0.20
Identities = 27/75 (36%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 42 QGEPPPPGEFSP---PGDGSSTL---PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSP 95
Q PPPPG SP PG G++T G PA + SPG ++ GGG S
Sbjct: 29 QPPPPPPGAHSPGATPGPGTATAERSSGVAPAASPAAPSPG-------SSGGGGFFSSLS 81
Query: 96 RVVTPEPAAPATQVS 110
V AA A S
Sbjct: 82 NAVKQTTAAAAATFS 96
Score = 31.2 bits (69), Expect = 0.58
Identities = 29/118 (24%), Positives = 37/118 (31%), Gaps = 9/118 (7%)
Query: 30 AEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPG-LGTRSSPAAAGG 88
A P A + G PP +PPG P P PG G + AG
Sbjct: 558 AGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKP--------PGPAGPTRQASQAGP 609
Query: 89 GATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGA 146
+G P P P+ P P A+ + P A P P A + A
Sbjct: 610 VPRTGPPTTQQPRPSGPGPAGRPKPQLAQKPSQDVPPPATAAAGGPPHPQLKASPAQA 667
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 42.4 bits (98), Expect = 3e-04
Identities = 56/207 (27%), Positives = 69/207 (33%), Gaps = 32/207 (15%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEF--SPPGDGSSTLPGGD 65
PP P S +S L P P + P A Q P PP F P S++LP
Sbjct: 769 PPSPPASLPMSPLAKP-----PPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSP 823
Query: 66 PACLLKSCSPGLGTR--SSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPA 123
A P L P + T +PR P P T VS P + L GP
Sbjct: 824 LATPPPQAPPVLAAPLLQVPPSPPASPTLQAPR--RPPTPGPDTSVSGPRLTLALAPGPP 881
Query: 124 SPSRAEAQAWPSVPDRSADSS-----------------GAAAAT----ATAGSRRAAGST 162
P + S PD + SS G AAA+ A + A +
Sbjct: 882 PPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWS 941
Query: 163 TGSVTTSCRRALLNCALPRPSSTGYGS 189
G R LP P +TG GS
Sbjct: 942 RGPAPPLAFRGAPGAPLPWPPATGPGS 968
Score = 37.4 bits (85), Expect = 0.008
Identities = 46/138 (33%), Positives = 57/138 (41%), Gaps = 20/138 (14%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEF------SPPGDGSSTL 61
PP P S +S L +P + A H L+ P PP + SPP S+T
Sbjct: 633 PPSPPASPPLSPLATPSPQAPNALAVHL-LQAPFSPPPSPPVQAPFSPPASPPVSPSATP 691
Query: 62 PGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP-AAPATQVSWPPSSARLLA 120
P P L +P L SP A+ + S +P P P AAP QV PPS
Sbjct: 692 PSQAPPSL---AAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQV--PPSP----- 741
Query: 121 GPASPSRA-EAQAWPSVP 137
PASP + A P VP
Sbjct: 742 -PASPPMSPSATPPPRVP 758
Score = 35.8 bits (81), Expect = 0.023
Identities = 46/132 (34%), Positives = 60/132 (45%), Gaps = 13/132 (9%)
Query: 8 PPVPSD-SSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDP 66
PPV + S S +SP A P++ P + Q P PP SPP S+T P P
Sbjct: 671 PPVQAPFSPPASPPVSPSATP-PSQAPPSLAAPPLQVPPSPPA--SPPMSPSATPPPQAP 727
Query: 67 ACLLKSCSPGLGTRSSPAAAGGGATSGSPRV-VTPEPAAPATQVSWPPSSARLLAGPASP 125
L +P L SP A+ + S +P V P AAP QV PPS L P SP
Sbjct: 728 PPL---AAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQV--PPSPPASL--PMSP 780
Query: 126 -SRAEAQAWPSV 136
++ QA P++
Sbjct: 781 LAKPPPQAPPAL 792
Score = 35.0 bits (79), Expect = 0.040
Identities = 46/190 (24%), Positives = 70/190 (36%), Gaps = 31/190 (16%)
Query: 24 RALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSS-------TLPG-----GDPACLLK 71
R+ + P +R +GE PP + + PG SS T PG G +
Sbjct: 81 RSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEE 140
Query: 72 SCSPGLGT---RSSPAAAGGGATSGSPRVVTPEPA------APATQVSWPPSSARLLAGP 122
+ + G T + S +AG + P TP PA A T+V P + A P
Sbjct: 141 TVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPS--ARP 198
Query: 123 ASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRP 182
P+ P +S S+ + T + + R S G + R+L + A P
Sbjct: 199 RPPTEG--------PRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLS 250
Query: 183 SSTGYGSESR 192
S G +R
Sbjct: 251 SPARSGPSAR 260
Score = 30.4 bits (67), Expect = 0.99
Identities = 44/178 (24%), Positives = 62/178 (34%), Gaps = 34/178 (19%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P PS + + + + LP P AR R +G P S + S+T P PA
Sbjct: 169 PGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEG---PRKSVSSASEHSTTEPS--PA 223
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSR 127
R P+A GG PA+ + S P S+ +GP++
Sbjct: 224 A-----------RRRPSAGGG----------LQRPASRSLSSSATPLSSPARSGPSARGT 262
Query: 128 AEAQAWPSVPDRSADSSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSST 185
A A PS P A R+ A G +++S A P PS T
Sbjct: 263 PRAPAHPSQP--KPKGLQALRPPQVTPPRKDAAPALGPLSSS------PLATPSPSGT 312
Score = 30.4 bits (67), Expect = 0.99
Identities = 36/125 (28%), Positives = 46/125 (36%), Gaps = 9/125 (7%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPP----PPGEFSPPGDGSSTLPG 63
PP PS + TL SP A P++ P + Q P PP + P S +L
Sbjct: 345 PPSPSAPPSLQTLPSPPATP-PSQAPPSMTTPPMQAPPSLQTIPPIQV-PHSLTSPSLQA 402
Query: 64 GDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARL---LA 120
L S S A + SPR +P+ S PP S L L+
Sbjct: 403 PPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQASLTSPSRPASTPPDSPPLQAPLS 462
Query: 121 GPASP 125
PASP
Sbjct: 463 LPASP 467
Score = 28.5 bits (62), Expect = 3.7
Identities = 35/115 (30%), Positives = 44/115 (38%), Gaps = 7/115 (6%)
Query: 29 PAEEPHARLREDKQGEPPPPGEFSPPGD-GSSTLPGGDPACLLKSCSPGLGT-RSSPAAA 86
P P AR +G P P S P G L K +P LG SSP A
Sbjct: 248 PLSSP-ARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPLAT 306
Query: 87 GGGATSGSPRVVTPEPAAPATQVSWPPS---SARLLAGPASPSRAEA-QAWPSVP 137
+ + + V P+ AA + PPS + L P SPS + Q PS P
Sbjct: 307 PSPSGTKARPVPPPDNAATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPP 361
Score = 28.1 bits (61), Expect = 4.9
Identities = 40/140 (28%), Positives = 53/140 (37%), Gaps = 30/140 (21%)
Query: 8 PPVPSD-SSRVSTLLSPRAL-------SLPAEEPHARLRE------DKQGEPPPPGEFSP 53
PP+ + S VS L SP + SL + P A L + Q PP +P
Sbjct: 467 PPLQTSLSPAVSPLSSPLTIHPLQALSSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTP 526
Query: 54 PGDGSSTLPGGDPACLLKSCSPG-LGTRSSPAAAGGGATSGSPR----------VVTPEP 102
P S T P P L S +P L T S+P T P + TP P
Sbjct: 527 PA--SLTTP---PLENLPSLAPPPLQTASAPLTTPHLETPPCPAPCPLQAPPSPLTTPPP 581
Query: 103 AAPATQVSWPPSSARLLAGP 122
P++ + PP + LA P
Sbjct: 582 ETPSSIATPPPQAPPALASP 601
Score = 27.7 bits (60), Expect = 6.4
Identities = 34/121 (28%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 45 PPPPGEFSPPGDGSSTLPGGD--------PACLLKSCSPGLGTRSSPAAAGGGATSGSPR 96
P PP DG T+ + P L SPG + A AG GA+S SP+
Sbjct: 959 PWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPK 1018
Query: 97 VV----TPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATAT 152
P A A+ V S LLA A + + P + + GA AA +
Sbjct: 1019 QARLGELPLGALQASVVQHLLSRTLLLAA-AEGAAGGSGGGPGGAEGGGVTGGARAALSD 1077
Query: 153 A 153
A
Sbjct: 1078 A 1078
Score = 27.3 bits (59), Expect = 8.4
Identities = 32/117 (27%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 45 PP--PPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEP 102
PP PP SPP G + P A P L A A+ + TP P
Sbjct: 591 PPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSPLATPSP 650
Query: 103 AAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSRRAA 159
AP + LL P SP + P P S S +A + A AA
Sbjct: 651 QAPNA------LAVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAA 701
Score = 27.3 bits (59), Expect = 8.4
Identities = 38/122 (31%), Positives = 46/122 (37%), Gaps = 17/122 (13%)
Query: 21 LSPRALSLPAEEPHARLREDKQGEPPPPGE--FSPPGDGSSTLPGGDPACLLKSC----- 73
LSP A P P L Q P PP SP S P LL++
Sbjct: 611 LSPLATPPPQAPPXLAL-PPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPP 669
Query: 74 SPGLGTRSSPAAAGGGATSGSP-RVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQA 132
SP + SP A+ + S +P P AAP QV PPS PASP + +
Sbjct: 670 SPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQV--PPSP------PASPPMSPSAT 721
Query: 133 WP 134
P
Sbjct: 722 PP 723
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 84 AAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPS-RAEAQAWPSVPDRSAD 142
A +GGG + +P VT A PA Q + PP +A L+ RA A+ + PD
Sbjct: 10 AESGGGGSGSAP--VTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPD---- 63
Query: 143 SSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
A A++GS +AA S SV T ++ P P+S
Sbjct: 64 --DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPAS 103
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 42.0 bits (97), Expect = 3e-04
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 9/102 (8%)
Query: 84 AAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPS-RAEAQAWPSVPDRSAD 142
A +GGG + +P VT A PA Q + PP +A L+ RA A+ + PD
Sbjct: 10 AESGGGGSGSAP--VTAGAAGPAAQEAEPPLTAVLVEEEEEEGGRAGAEGGAAGPD---- 63
Query: 143 SSGAAAATATAGSRRAAGSTTGSVTTSCRRALLNCALPRPSS 184
A A++GS +AA S SV T ++ P P+S
Sbjct: 64 --DGGVAAASSGSAQAASSPAASVGTGVAGGAVSTPAPAPAS 103
>gi|116256363 transmembrane protease, serine 13 [Homo sapiens]
Length = 567
Score = 42.0 bits (97), Expect = 3e-04
Identities = 45/145 (31%), Positives = 59/145 (40%), Gaps = 20/145 (13%)
Query: 37 LREDKQGEPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPR 96
+ D G P S + P G P PG R+SPA A SP
Sbjct: 1 MERDSHGNASPARTPSAGASPAQASPAGTP--------PG---RASPAQAS--PAQASPA 47
Query: 97 VVTPEPAAPATQVSWPPSSARLLAGPASPSRAE-AQAWPSVPDRSADSSGAAAATATAGS 155
P A+PA R G ASP++A AQA P A +S A A+ + + S
Sbjct: 48 GTPPGRASPAQASPAGTPPGRASPGRASPAQASPAQASP------ARASPALASLSRSSS 101
Query: 156 RRAAGSTTGSVTTSCRRALLNCALP 180
R++ + + SVTTS R L A P
Sbjct: 102 GRSSSARSASVTTSPTRVYLVRATP 126
Score = 30.0 bits (66), Expect = 1.3
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 3/97 (3%)
Query: 99 TPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAAT--ATAGSR 156
TP A Q S P + A PA S A+A + P R++ + + A T A
Sbjct: 14 TPSAGASPAQAS-PAGTPPGRASPAQASPAQASPAGTPPGRASPAQASPAGTPPGRASPG 72
Query: 157 RAAGSTTGSVTTSCRRALLNCALPRPSSTGYGSESRS 193
RA+ + S RA A SS+G S +RS
Sbjct: 73 RASPAQASPAQASPARASPALASLSRSSSGRSSSARS 109
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 34/140 (24%)
Query: 27 SLPAEEPHARLREDKQGEPPPPG-------EFSPPGDGSSTLPGGDPACLLKSCSPGLGT 79
+LP+ P A PPPP SPPG G+ LPG P
Sbjct: 284 NLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLP------------- 330
Query: 80 RSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDR 139
SP A G G G P P + S PP+S+ + PA P R P
Sbjct: 331 --SPHAMGQG-MGGLPPGPEKGPTLAPSPHSLPPASS---SAPAPPMR--------FPYS 376
Query: 140 SADSSGAAAATATAGSRRAA 159
S+ SS AAA+++++ S +A
Sbjct: 377 SSSSSSAAASSSSSSSSSSA 396
Score = 36.6 bits (83), Expect = 0.014
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P P S ++P P E P +R+ + G PPP + P G G L G
Sbjct: 176 PRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTG-GVLSG---- 230
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASP 125
P +G + AA+ G +G + P P P + S S A P +P
Sbjct: 231 -------PPMGPKGGGAASSVGGPNGGKQ--HPPPTTPISVSSSGASGAPPTKPPTTP 279
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 33/171 (19%)
Query: 7 WPPVPS---DSSRVSTLLSP--------RALSLPAEEPHARLRED------------KQG 43
+PPVP+ S+ +ST+++ + S P P+ + K G
Sbjct: 601 FPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPG 660
Query: 44 EPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPA 103
PP +PPG ++ P G K SP +G P A G S P P
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGT--FKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASG 718
Query: 104 AP--ATQVSWPPSSA-RLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATA 151
P ATQ+ P+ P P+R+ PS P + D A+ +A
Sbjct: 719 PPLSATQIKQEPAEEYETPESPVPPARS-----PSPPPKVVDVPSHASQSA 764
Score = 30.0 bits (66), Expect = 1.3
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 45 PPPPGEFSPPGDGSSTLPGGDPAC-----LLKSCSPG---LGTRSSPAAAGGGATSGSPR 96
PPPPG F P +G S+ A L+ PG L S + +G P
Sbjct: 509 PPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV 568
Query: 97 VVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
+ ++ +Q S+P S GP + +P VP + S+ + AT S
Sbjct: 569 SSSSNSSSSTSQGSYPCSHPSPSQGP----QGAPYPFPPVPTVTTSSATLSTVIATVASS 624
Query: 157 RAAGST 162
A T
Sbjct: 625 PAGYKT 630
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 41.6 bits (96), Expect = 4e-04
Identities = 42/140 (30%), Positives = 56/140 (40%), Gaps = 34/140 (24%)
Query: 27 SLPAEEPHARLREDKQGEPPPPG-------EFSPPGDGSSTLPGGDPACLLKSCSPGLGT 79
+LP+ P A PPPP SPPG G+ LPG P
Sbjct: 284 NLPSAPPPANFPHVTPNLPPPPALRPLNNASASPPGLGAQPLPGHLP------------- 330
Query: 80 RSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDR 139
SP A G G G P P + S PP+S+ + PA P R P
Sbjct: 331 --SPHAMGQG-MGGLPPGPEKGPTLAPSPHSLPPASS---SAPAPPMR--------FPYS 376
Query: 140 SADSSGAAAATATAGSRRAA 159
S+ SS AAA+++++ S +A
Sbjct: 377 SSSSSSAAASSSSSSSSSSA 396
Score = 36.6 bits (83), Expect = 0.014
Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 8 PPVPSDSSRVSTLLSPRALSLPAEEPHARLREDKQGEPPPPGEFSPPGDGSSTLPGGDPA 67
P P S ++P P E P +R+ + G PPP + P G G L G
Sbjct: 176 PRQPEASFEPHPSVTPTGYHAPMEPPTSRMFQAPPGAPPPHPQLYPGGTG-GVLSG---- 230
Query: 68 CLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPAAPATQVSWPPSSARLLAGPASP 125
P +G + AA+ G +G + P P P + S S A P +P
Sbjct: 231 -------PPMGPKGGGAASSVGGPNGGKQ--HPPPTTPISVSSSGASGAPPTKPPTTP 279
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/171 (25%), Positives = 64/171 (37%), Gaps = 33/171 (19%)
Query: 7 WPPVPS---DSSRVSTLLSP--------RALSLPAEEPHARLRED------------KQG 43
+PPVP+ S+ +ST+++ + S P P+ + K G
Sbjct: 601 FPPVPTVTTSSATLSTVIATVASSPAGYKTASPPGPPPYGKRAPSPGAYKTATPPGYKPG 660
Query: 44 EPPPPGEFSPPGDGSSTLPGGDPACLLKSCSPGLGTRSSPAAAGGGATSGSPRVVTPEPA 103
PP +PPG ++ P G K SP +G P A G S P P
Sbjct: 661 SPPSFRTGTPPGYRGTSPPAGPGT--FKPGSPTVGPGPLPPAGPSGLPSLPPPPAAPASG 718
Query: 104 AP--ATQVSWPPSSA-RLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATA 151
P ATQ+ P+ P P+R+ PS P + D A+ +A
Sbjct: 719 PPLSATQIKQEPAEEYETPESPVPPARS-----PSPPPKVVDVPSHASQSA 764
Score = 30.0 bits (66), Expect = 1.3
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 45 PPPPGEFSPPGDGSSTLPGGDPAC-----LLKSCSPG---LGTRSSPAAAGGGATSGSPR 96
PPPPG F P +G S+ A L+ PG L S + +G P
Sbjct: 509 PPPPGAFPHPLEGGSSHHAHPYAMSPSLGSLRPYPPGPAHLPPPHSQVSYSQAGPNGPPV 568
Query: 97 VVTPEPAAPATQVSWPPSSARLLAGPASPSRAEAQAWPSVPDRSADSSGAAAATATAGSR 156
+ ++ +Q S+P S GP + +P VP + S+ + AT S
Sbjct: 569 SSSSNSSSSTSQGSYPCSHPSPSQGP----QGAPYPFPPVPTVTTSSATLSTVIATVASS 624
Query: 157 RAAGST 162
A T
Sbjct: 625 PAGYKT 630
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.123 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,784,341
Number of Sequences: 37866
Number of extensions: 750926
Number of successful extensions: 9046
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 1152
Number of HSP's that attempted gapping in prelim test: 5153
Number of HSP's gapped (non-prelim): 4222
length of query: 194
length of database: 18,247,518
effective HSP length: 97
effective length of query: 97
effective length of database: 14,574,516
effective search space: 1413728052
effective search space used: 1413728052
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.