Guide to the Human Genome
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Name: ZNRF2 Sequence: fasta or formatted (242aa) NCBI GI: 23821044
Description:

zinc finger/RING finger 2

Referenced in:

Ring Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.5         35           7
 C cysteine            3.7          9           1
 D aspartate           4.5         11           1
 E glutamate           3.7          9           2
 F phenylalanine       2.5          6           1
 G glycine            14.5         35           5
 H histidine           2.9          7           1
 I isoleucine          2.9          7           1
 K lysine              2.5          6           1
 L leucine             5.4         13           1
 M methionine          1.7          4           1
 N asparagine          2.1          5           1
 P proline             9.1         22           1
 Q glutamine           2.9          7           2
 R arginine            5.4         13           1
 S serine             13.2         32           4
 T threonine           2.1          5           1
 V valine              4.5         11           1
 W tryptophan          0.4          1           1
 Y tyrosine            1.7          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger/RING finger 2 
ZNRF1                 0.359   zinc and ring finger protein 1 
RLIM                  0.068   ring finger protein, LIM domain interacting 
RLIM                  0.068   ring finger protein, LIM domain interacting 
RNF111                0.061   ring finger protein 111 
PHOX2B                0.061   paired-like homeobox 2b 
RNF165                0.059   ring finger protein 165 
ZNF367                0.057   zinc finger protein 367 
RNF130                0.057   ring finger protein 130 
RNF149                0.055   ring finger protein 149 
RNF11                 0.053   ring finger protein 11 
ZNRF4                 0.053   zinc and ring finger 4 
NUP214                0.051   nucleoporin 214kDa 
PRR12                 0.051   proline rich 12 
RNF43                 0.051   ring finger protein 43 
RNF150                0.051   ring finger protein 150 
LOC100290625          0.051   PREDICTED: hypothetical protein XP_002347002 
LOC100289630          0.051   PREDICTED: hypothetical protein XP_002342853 
RNF167                0.049   ring finger protein 167 
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 2 ...
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 1 ...
ARID1B                0.049   AT rich interactive domain 1B (SWI1-like) isoform 3 ...
RNF122                0.046   ring finger protein 122 
TNRC18                0.046   trinucleotide repeat containing 18 
ARID1A                0.046   AT rich interactive domain 1A isoform a 
ARID1A                0.046   AT rich interactive domain 1A isoform b 
FOXL2                 0.044   forkhead box L2 
RNF128                0.044   ring finger protein 128 isoform 1 
RNF128                0.044   ring finger protein 128 isoform 2 
RNF6                  0.044   ring finger protein 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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