Guide to the Human Genome
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Name: LOC100288937 Sequence: fasta or formatted (194aa) NCBI GI: 239744954
Description:

PREDICTED: hypothetical protein XP_002343343

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.5         30           4
 C cysteine            2.1          4           1
 D aspartate           3.1          6           1
 E glutamate           4.6          9           2
 F phenylalanine       0.5          1           1
 G glycine             9.8         19           3
 H histidine           0.5          1           1
 I isoleucine          0.0          0           0
 K lysine              1.0          2           1
 L leucine             7.2         14           2
 M methionine          0.5          1           1
 N asparagine          0.5          1           1
 P proline            14.4         28           4
 Q glutamine           2.1          4           1
 R arginine            8.8         17           2
 S serine             17.0         33           2
 T threonine           6.7         13           2
 V valine              3.6          7           2
 W tryptophan          1.5          3           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343343 
LOC100292339          1.000   PREDICTED: hypothetical protein 
OTX1                  0.071   orthodenticle homeobox 1 
SRRM2                 0.063   splicing coactivator subunit SRm300 
LOC643355             0.057   PREDICTED: hypothetical protein 
LOC643355             0.057   PREDICTED: hypothetical protein 
TAF4                  0.057   TBP-associated factor 4 
GNAS                  0.054   GNAS complex locus XLas 
NKX6-1                0.052   NK6 transcription factor related, locus 1 
HIVEP3                0.052   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.052   human immunodeficiency virus type I enhancer bindin...
SRRM1                 0.052   serine/arginine repetitive matrix 1 
NUP214                0.052   nucleoporin 214kDa 
MUC7                  0.052   mucin 7, secreted precursor 
MUC7                  0.052   mucin 7, secreted precursor 
MUC7                  0.052   mucin 7, secreted precursor 
AMOT                  0.052   angiomotin isoform 2 
AMOT                  0.052   angiomotin isoform 1 
ZNRF2                 0.049   zinc finger/RING finger 2 
ARMCX2                0.049   ALEX2 protein 
ARMCX2                0.049   ALEX2 protein 
LOC100133756          0.049   PREDICTED: hypothetical protein, partial 
SYN1                  0.049   synapsin I isoform Ia 
SYN1                  0.049   synapsin I isoform Ib 
FLJ22184              0.046   PREDICTED: hypothetical protein FLJ22184 
TRIM33                0.046   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.046   tripartite motif-containing 33 protein isoform alpha...
TMPRSS13              0.046   transmembrane protease, serine 13 
ATN1                  0.046   atrophin-1 
ATN1                  0.046   atrophin-1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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