Guide to the Human Genome
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Name: LOC100290755 Sequence: fasta or formatted (221aa) NCBI GI: 239748030
Description:

PREDICTED: hypothetical protein XP_002346496

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         14           1
 C cysteine            2.7          6           1
 D aspartate           0.0          0           0
 E glutamate           0.0          0           0
 F phenylalanine       8.6         19           1
 G glycine             4.1          9           1
 H histidine          10.9         24           1
 I isoleucine          2.3          5           2
 K lysine              0.5          1           1
 L leucine            12.7         28           3
 M methionine          3.2          7           1
 N asparagine          1.4          3           1
 P proline            14.0         31           2
 Q glutamine           1.8          4           2
 R arginine            4.5         10           1
 S serine             16.7         37           3
 T threonine           6.8         15           2
 V valine              2.3          5           1
 W tryptophan          0.5          1           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346496 
PRR21                 0.790   proline rich 21 
LOC100288473          0.087   PREDICTED: hypothetical protein XP_002343336 
LOC100132614          0.085   PREDICTED: hypothetical protein, partial 
LOC100291393          0.076   PREDICTED: hypothetical protein XP_002347924 
LOC100131525          0.074   PREDICTED: hypothetical protein 
LOC100288786          0.074   PREDICTED: hypothetical protein XP_002343819 
LOC100293557          0.072   PREDICTED: hypothetical protein 
LOC100133439          0.067   PREDICTED: hypothetical protein 
LOC100133981          0.065   PREDICTED: hypothetical protein 
SF3A2                 0.058   splicing factor 3a, subunit 2 
LOC100133553          0.043   PREDICTED: hypothetical protein, partial 
PRDM2                 0.040   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.040   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.040   retinoblastoma protein-binding zinc finger protein i...
LOC100128403          0.038   PREDICTED: hypothetical protein 
LOC100128719          0.038   PREDICTED: hypothetical protein, partial 
LOC100128403          0.038   PREDICTED: hypothetical protein 
LOC100128719          0.038   PREDICTED: hypothetical protein, partial 
LOC100128403          0.038   PREDICTED: hypothetical protein 
MUC12                 0.034   PREDICTED: mucin 12 
LOC100133714          0.034   PREDICTED: similar to Mucin-12, partial 
MUC12                 0.034   PREDICTED: mucin 12 
MEGF9                 0.031   multiple EGF-like-domains 9 
SOS1                  0.031   son of sevenless homolog 1 
PTPN23                0.029   protein tyrosine phosphatase, non-receptor type 23 [...
RERE                  0.029   atrophin-1 like protein isoform b 
RERE                  0.029   atrophin-1 like protein isoform a 
RERE                  0.029   atrophin-1 like protein isoform a 
LOC284297             0.027   hypothetical protein LOC284297 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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