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Search of human proteins with 239754971
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754971 PREDICTED: similar to spermatogenesis and
centriole associated 1 [Homo sapiens]
(132 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754971 PREDICTED: similar to spermatogenesis and centriole... 266 3e-72
gi|239743652 PREDICTED: hypothetical protein XP_002342922 [Homo ... 266 3e-72
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 63 6e-11
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 63 6e-11
gi|157738667 FYVE and coiled-coil domain containing 1 [Homo sapi... 32 0.19
gi|14249388 retina and anterior neural fold homeobox 2 [Homo sap... 32 0.19
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 32 0.19
gi|88900495 HCF-binding transcription factor Zhangfei [Homo sapi... 31 0.25
gi|239757331 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|239751841 PREDICTED: hypothetical protein [Homo sapiens] 31 0.25
gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo ... 31 0.25
gi|122937345 myosin VB [Homo sapiens] 31 0.32
gi|109633041 protein tyrosine phosphatase, receptor type, F isof... 30 0.42
gi|109633039 protein tyrosine phosphatase, receptor type, F isof... 30 0.42
gi|55770834 centromere protein F [Homo sapiens] 30 0.42
gi|19923830 pre-B-cell leukemia homeobox interacting protein 1 [... 30 0.42
gi|239753580 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|239748080 PREDICTED: hypothetical protein [Homo sapiens] 30 0.72
gi|239741977 PREDICTED: hypothetical protein XP_002342365 [Homo ... 30 0.72
gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens] 30 0.72
gi|171906567 peripheral benzodiazepine receptor-associated prote... 30 0.72
gi|171906559 peripheral benzodiazepine receptor-associated prote... 30 0.72
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 29 0.94
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 29 0.94
gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo ... 29 0.94
gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo ... 29 0.94
gi|62244004 modulator of estrogen induced transcription isoform ... 29 0.94
gi|63176611 modulator of estrogen induced transcription isoform ... 29 0.94
gi|8922149 downstream neighbor of SON [Homo sapiens] 29 0.94
gi|41322923 plectin 1 isoform 11 [Homo sapiens] 29 1.2
>gi|239754971 PREDICTED: similar to spermatogenesis and centriole
associated 1 [Homo sapiens]
Length = 132
Score = 266 bits (681), Expect = 3e-72
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVA 60
MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVA
Sbjct: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVA 60
Query: 61 ASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQG 120
ASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQG
Sbjct: 61 ASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQG 120
Query: 121 EDGGAGGGPGLM 132
EDGGAGGGPGLM
Sbjct: 121 EDGGAGGGPGLM 132
>gi|239743652 PREDICTED: hypothetical protein XP_002342922 [Homo
sapiens]
Length = 132
Score = 266 bits (681), Expect = 3e-72
Identities = 132/132 (100%), Positives = 132/132 (100%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVA 60
MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVA
Sbjct: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVA 60
Query: 61 ASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQG 120
ASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQG
Sbjct: 61 ASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQG 120
Query: 121 EDGGAGGGPGLM 132
EDGGAGGGPGLM
Sbjct: 121 EDGGAGGGPGLM 132
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 63.2 bits (152), Expect = 6e-11
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGF 55
MSLL++YEGLR +I+RL +ENEEL++LV+LI+EN ELK ++ + LG SGF
Sbjct: 1 MSLLTNYEGLRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLGI--SGF 53
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 63.2 bits (152), Expect = 6e-11
Identities = 31/55 (56%), Positives = 43/55 (78%), Gaps = 2/55 (3%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGF 55
MSLL++YEGLR +I+RL +ENEEL++LV+LI+EN ELK ++ + LG SGF
Sbjct: 1 MSLLTNYEGLRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLGI--SGF 53
>gi|157738667 FYVE and coiled-coil domain containing 1 [Homo
sapiens]
Length = 1478
Score = 31.6 bits (70), Expect = 0.19
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 4 LSSYEGLRQEIQRLAQENEELR-RLVQLIQENQELKLVLRNRGSSL 48
L ++ +R E+ +L ++LR R+ QL +ENQEL+ + +G L
Sbjct: 229 LEGFDEMRLELDQLEVREKQLRERMQQLDRENQELRAAVSQQGEQL 274
>gi|14249388 retina and anterior neural fold homeobox 2 [Homo
sapiens]
Length = 184
Score = 31.6 bits (70), Expect = 0.19
Identities = 28/80 (35%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 56 LAEVAASPWLPRRRTIKFKNAERGHLEVGSWGAHARRAQARRRRPEGRRAKVPLILRPW- 114
L EV W RR K++ ER LE GS A R P R + L L PW
Sbjct: 66 LPEVRVQVWFQNRRA-KWRRQER--LESGSGAVAAPRLPEAPALPFARPPAMSLPLEPWL 122
Query: 115 ---PGEAQGEDGGAGGGPGL 131
P G G GPGL
Sbjct: 123 GPGPPAVPGLPRLLGPGPGL 142
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 31.6 bits (70), Expect = 0.19
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 8/76 (10%)
Query: 1 MSLLSSYEGLRQE----IQRLAQENEELRRLVQLIQEN---QELKLVLRNRGSSLGFCSS 53
+ L S LRQ+ +Q+ A + EL+R QL+QE QE + + +GS G ++
Sbjct: 899 LQLFSQQHFLRQQEFLYLQQQAAQALELQRSAQLVQERLKAQEHRAEMEEKGSKRGLEAA 958
Query: 54 GFLAEVAASP-WLPRR 68
G A P LPR+
Sbjct: 959 GKAGLATAGPGLLPRK 974
>gi|88900495 HCF-binding transcription factor Zhangfei [Homo
sapiens]
Length = 354
Score = 31.2 bits (69), Expect = 0.25
Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQ-ENQELKLVLRN 43
M L S GL E Q L EN EL + VQ +Q E++ L+ VL N
Sbjct: 230 MGLESRVRGLAAENQELRAENRELGKRVQALQEESRYLRAVLAN 273
>gi|239757331 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 31.2 bits (69), Expect = 0.25
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 1 MSLLSSYEGLRQEI----QRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSG-- 54
+SLL S E LR + +RL + E RR + + ++ L R+R S C SG
Sbjct: 132 LSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG 191
Query: 55 -FLAEVAASPWL--PRRR 69
L EV WL PR R
Sbjct: 192 PGLDEVGRPVWLGSPRDR 209
>gi|239751841 PREDICTED: hypothetical protein [Homo sapiens]
Length = 231
Score = 31.2 bits (69), Expect = 0.25
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 1 MSLLSSYEGLRQEI----QRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSG-- 54
+SLL S E LR + +RL + E RR + + ++ L R+R S C SG
Sbjct: 132 LSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG 191
Query: 55 -FLAEVAASPWL--PRRR 69
L EV WL PR R
Sbjct: 192 PGLDEVGRPVWLGSPRDR 209
>gi|239746332 PREDICTED: hypothetical protein XP_002343733 [Homo
sapiens]
Length = 231
Score = 31.2 bits (69), Expect = 0.25
Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 9/78 (11%)
Query: 1 MSLLSSYEGLRQEI----QRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSG-- 54
+SLL S E LR + +RL + E RR + + ++ L R+R S C SG
Sbjct: 132 LSLLRSLERLRSSLSRLRERLRRSRERERRRSRSLSRSRLRSLRSRSRSRSRSLCGSGEG 191
Query: 55 -FLAEVAASPWL--PRRR 69
L EV WL PR R
Sbjct: 192 PGLDEVGRPVWLGSPRDR 209
>gi|122937345 myosin VB [Homo sapiens]
Length = 1848
Score = 30.8 bits (68), Expect = 0.32
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 9 GLRQEIQRLAQENEELRRLVQLIQENQ 35
G++QEI RL EN +L+ LV+ +++N+
Sbjct: 1394 GVQQEISRLTNENLDLKELVEKLEKNE 1420
>gi|109633041 protein tyrosine phosphatase, receptor type, F isoform 1
precursor [Homo sapiens]
Length = 1907
Score = 30.4 bits (67), Expect = 0.42
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 15 QRLAQENEELRRLVQLIQENQELKLVLRNRGSSLG 49
Q + + +R+L+ +Q N E VL NRGSS G
Sbjct: 1051 QSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAG 1085
>gi|109633039 protein tyrosine phosphatase, receptor type, F isoform 2
precursor [Homo sapiens]
Length = 1898
Score = 30.4 bits (67), Expect = 0.42
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 15 QRLAQENEELRRLVQLIQENQELKLVLRNRGSSLG 49
Q + + +R+L+ +Q N E VL NRGSS G
Sbjct: 1042 QSVEVDGHSMRKLIADLQPNTEYSFVLMNRGSSAG 1076
>gi|55770834 centromere protein F [Homo sapiens]
Length = 3114
Score = 30.4 bits (67), Expect = 0.42
Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 9 GLRQEIQRLAQENEELRRLV-QLIQENQELKLVLRNR 44
GL+QEI L +E ++++ V L+QEN++L V++ +
Sbjct: 1127 GLKQEIMTLKEEQNKMQKEVNDLLQENEQLMKVMKTK 1163
Score = 28.5 bits (62), Expect = 1.6
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 3 LLSSYEGLRQEI----QRLAQENEELRRLVQLIQENQEL 37
L SS GL QE+ Q+L +++EE+ RL IQ+ ++L
Sbjct: 2499 LQSSVNGLIQEVEDGKQKLEKKDEEISRLKNQIQDQEQL 2537
Score = 26.6 bits (57), Expect = 6.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELK 38
M+L +++E+ L QENE+L ++++ E Q L+
Sbjct: 1133 MTLKEEQNKMQKEVNDLLQENEQLMKVMKTKHECQNLE 1170
>gi|19923830 pre-B-cell leukemia homeobox interacting protein 1
[Homo sapiens]
Length = 731
Score = 30.4 bits (67), Expect = 0.42
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 1 MSLLSSYEGLRQEIQRLAQENEELRRLVQLIQENQELKLVLRNRG 45
+S L E L E Q L QE E RRL+ +Q++ E L +RG
Sbjct: 378 LSFLKQKEQLEAEAQALRQELERQRRLLGSVQQDLERSLQDASRG 422
>gi|239753580 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 29.6 bits (65), Expect = 0.72
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 WGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQGEDG 123
WG R +ARRR P G ++ +R PGE G +G
Sbjct: 32 WGCRERSGRARRRAPAGTGSRG---VRARPGEPAGAEG 66
>gi|239748080 PREDICTED: hypothetical protein [Homo sapiens]
Length = 103
Score = 29.6 bits (65), Expect = 0.72
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 WGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQGEDG 123
WG R +ARRR P G ++ +R PGE G +G
Sbjct: 32 WGCRERSGRARRRAPAGTGSRG---VRARPGEPAGAEG 66
>gi|239741977 PREDICTED: hypothetical protein XP_002342365 [Homo
sapiens]
Length = 103
Score = 29.6 bits (65), Expect = 0.72
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 86 WGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQGEDG 123
WG R +ARRR P G ++ +R PGE G +G
Sbjct: 32 WGCRERSGRARRRAPAGTGSRG---VRARPGEPAGAEG 66
>gi|62243484 sarcoma antigen NY-SAR-41 [Homo sapiens]
Length = 1417
Score = 29.6 bits (65), Expect = 0.72
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 12 QEIQRLAQENEELR-RLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVAASPWLPRRRT 70
+E QRL EELR +L+Q+ EN +LK+ + +R S L + + S L T
Sbjct: 634 KERQRLVTGIEELRTKLIQIEAENSDLKVNMAHRTSQFQLIQEELLEKASNSSKLESEMT 693
Query: 71 IK 72
K
Sbjct: 694 KK 695
>gi|171906567 peripheral benzodiazepine receptor-associated protein 1
isoform b [Homo sapiens]
Length = 1797
Score = 29.6 bits (65), Expect = 0.72
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 96 RRRRPEGRRAKVPLILRPWPGEAQGEDGGAGGGP 129
RR R RAK PL GEA+G+DG GP
Sbjct: 1502 RRGRSATGRAKEPLSRATETGEARGQDGSGRRGP 1535
>gi|171906559 peripheral benzodiazepine receptor-associated protein 1
isoform a [Homo sapiens]
Length = 1857
Score = 29.6 bits (65), Expect = 0.72
Identities = 16/34 (47%), Positives = 18/34 (52%)
Query: 96 RRRRPEGRRAKVPLILRPWPGEAQGEDGGAGGGP 129
RR R RAK PL GEA+G+DG GP
Sbjct: 1562 RRGRSATGRAKEPLSRATETGEARGQDGSGRRGP 1595
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 29.3 bits (64), Expect = 0.94
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 63 PWLPRRRTIKFKNAERGHL-EVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQGE 121
P LP R + + + G +VG GA + P+G R + ++ P P A GE
Sbjct: 554 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGE 613
Query: 122 DGGAG-----GGPGL 131
G AG G PGL
Sbjct: 614 PGKAGEKGLPGAPGL 628
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 29.3 bits (64), Expect = 0.94
Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 6/75 (8%)
Query: 63 PWLPRRRTIKFKNAERGHL-EVGSWGAHARRAQARRRRPEGRRAKVPLILRPWPGEAQGE 121
P LP R + + + G +VG GA + P+G R + ++ P P A GE
Sbjct: 485 PGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGE 544
Query: 122 DGGAG-----GGPGL 131
G AG G PGL
Sbjct: 545 PGKAGEKGLPGAPGL 559
>gi|112382252 spectrin, beta, non-erythrocytic 1 isoform 2 [Homo
sapiens]
Length = 2155
Score = 29.3 bits (64), Expect = 0.94
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 10 LRQEIQRLAQENEE-----LRRLVQLIQENQELKLVLRNRGSSLGFCS--SGFLAEV-AA 61
L++E ++L E+ + L RL ++ +E+K L+NR +SLG S FL ++
Sbjct: 1002 LQKEAEKLESEHPDQAQAILSRLAEISDVWEEMKTTLKNREASLGEASKLQQFLRDLDDF 1061
Query: 62 SPWLPRRRT 70
WL R +T
Sbjct: 1062 QSWLSRTQT 1070
>gi|112382250 spectrin, beta, non-erythrocytic 1 isoform 1 [Homo
sapiens]
Length = 2364
Score = 29.3 bits (64), Expect = 0.94
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 10 LRQEIQRLAQENEE-----LRRLVQLIQENQELKLVLRNRGSSLGFCS--SGFLAEV-AA 61
L++E ++L E+ + L RL ++ +E+K L+NR +SLG S FL ++
Sbjct: 1015 LQKEAEKLESEHPDQAQAILSRLAEISDVWEEMKTTLKNREASLGEASKLQQFLRDLDDF 1074
Query: 62 SPWLPRRRT 70
WL R +T
Sbjct: 1075 QSWLSRTQT 1083
>gi|62244004 modulator of estrogen induced transcription isoform b
[Homo sapiens]
Length = 1016
Score = 29.3 bits (64), Expect = 0.94
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 11 RQEIQRLAQENEELRRLVQLIQENQELKLVLR 42
R+E +R+A+E EELRR Q ++ QE + L+
Sbjct: 678 RKEAERIAREREELRRQQQQLRYEQEKRNSLK 709
>gi|63176611 modulator of estrogen induced transcription isoform a
[Homo sapiens]
Length = 1034
Score = 29.3 bits (64), Expect = 0.94
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 11 RQEIQRLAQENEELRRLVQLIQENQELKLVLR 42
R+E +R+A+E EELRR Q ++ QE + L+
Sbjct: 696 RKEAERIAREREELRRQQQQLRYEQEKRNSLK 727
>gi|8922149 downstream neighbor of SON [Homo sapiens]
Length = 566
Score = 29.3 bits (64), Expect = 0.94
Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 14/52 (26%)
Query: 91 RRAQARRR-----------RPEGRRAKVP--LILRPWPGEAQGEDGGAGGGP 129
RR +AR R P RRA + L LRP+P A G GG+GGGP
Sbjct: 22 RRKRARSRGAAASPPRELTEPAARRAALVAGLPLRPFPA-AGGRGGGSGGGP 72
>gi|41322923 plectin 1 isoform 11 [Homo sapiens]
Length = 4547
Score = 28.9 bits (63), Expect = 1.2
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 11 RQEIQRLAQENEELRRLVQLIQENQELKLVLRNRGSSLGFCSSGFLAEVAASPWLPRRR 69
RQ+ + LA+EN+ LR +QL++E ++L ++VAA+ LP R
Sbjct: 2581 RQQEELLAEENQRLREQLQLLEEQHR---------AALAHSEEVTASQVAATKTLPNGR 2630
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,376,642
Number of Sequences: 37866
Number of extensions: 248181
Number of successful extensions: 2093
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 68
Number of HSP's that attempted gapping in prelim test: 1971
Number of HSP's gapped (non-prelim): 186
length of query: 132
length of database: 18,247,518
effective HSP length: 91
effective length of query: 41
effective length of database: 14,801,712
effective search space: 606870192
effective search space used: 606870192
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.