Guide to the Human Genome
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Name: SLTM Sequence: fasta or formatted (1016aa) NCBI GI: 62244004
Description:

modulator of estrogen induced transcription isoform b

Referenced in:

Nucleus and Nucleolus

Other entries for this name:
alt prot [1034aa] modulator of estrogen induced transcription isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         57           3
 C cysteine            0.5          5           1
 D aspartate           7.3         74           2
 E glutamate          13.4        136           4
 F phenylalanine       1.8         18           1
 G glycine             7.4         75           3
 H histidine           2.8         28           1
 I isoleucine          4.2         43           2
 K lysine              9.7         99           2
 L leucine             4.2         43           2
 M methionine          1.3         13           1
 N asparagine          3.2         33           1
 P proline             4.0         41           4
 Q glutamine           3.1         32           4
 R arginine           11.2        114           4
 S serine             10.8        110           3
 T threonine           4.3         44           2
 V valine              3.4         35           2
 W tryptophan          0.4          4           1
 Y tyrosine            1.2         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   modulator of estrogen induced transcription isoform ... 
SLTM                  0.994   modulator of estrogen induced transcription isoform ...
SAFB2                 0.212   scaffold attachment factor B2 
SAFB                  0.199   scaffold attachment factor B 
LOC100286959          0.043   PREDICTED: hypothetical protein XP_002343921 
RBM25                 0.042   RNA binding motif protein 25 
TCHH                  0.042   trichohyalin 
LOC100133599          0.037   PREDICTED: hypothetical protein 
INCENP                0.036   inner centromere protein antigens 135/155kDa isofor...
ZC3H13                0.036   zinc finger CCCH-type containing 13 
INCENP                0.036   inner centromere protein antigens 135/155kDa isofor...
CDC2L1                0.036   cell division cycle 2-like 1 (PITSLRE proteins) isof...
PPIG                  0.035   peptidylprolyl isomerase G 
CYLC1                 0.032   cylicin, basic protein of sperm head cytoskeleton 1...
DSPP                  0.032   dentin sialophosphoprotein preproprotein 
LOC100133599          0.032   PREDICTED: hypothetical protein 
EIF5B                 0.031   eukaryotic translation initiation factor 5B 
ARGLU1                0.031   arginine and glutamate rich 1 
CDC2L1                0.031   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CALD1                 0.030   caldesmon 1 isoform 1 
MAP4K4                0.030   mitogen-activated protein kinase kinase kinase kinas...
LOC283767             0.030   golgi autoantigen, golgin subfamily a-like 
CDC2L2                0.030   cell division cycle 2-like 2 isoform 4 
CDC2L1                0.030   cell division cycle 2-like 1 (PITSLRE proteins) isof...
ENAH                  0.029   enabled homolog isoform a 
ENAH                  0.029   enabled homolog isoform b 
CDC2L2                0.029   cell division cycle 2-like 2 isoform 1 
SLK                   0.029   serine/threonine kinase 2 
EIF3A                 0.029   eukaryotic translation initiation factor 3, subunit 1...
LOC645202             0.028   PREDICTED: hypothetical protein LOC645202 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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