Guide to the Human Genome
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Name: LOC100289480 Sequence: fasta or formatted (103aa) NCBI GI: 239748080
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {103aa} PREDICTED: hypothetical protein XP_002342365
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5         17           2
 C cysteine            1.9          2           1
 D aspartate           1.9          2           1
 E glutamate           5.8          6           1
 F phenylalanine       0.0          0           0
 G glycine            17.5         18           2
 H histidine           0.0          0           0
 I isoleucine          0.0          0           0
 K lysine              1.9          2           1
 L leucine             4.9          5           1
 M methionine          1.0          1           1
 N asparagine          0.0          0           0
 P proline             5.8          6           1
 Q glutamine           1.9          2           1
 R arginine           16.5         17           3
 S serine              8.7          9           1
 T threonine           3.9          4           1
 V valine              8.7          9           2
 W tryptophan          1.0          1           1
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100292259          1.000   PREDICTED: hypothetical protein 
LOC100289480          1.000   PREDICTED: hypothetical protein XP_002342365 
LOC100293059          0.066   PREDICTED: hypothetical protein 
LOC100290935          0.066   PREDICTED: hypothetical protein XP_002348161 
LOC100287291          0.066   PREDICTED: hypothetical protein XP_002343834 
LOC643355             0.061   PREDICTED: hypothetical protein 
LOC100292370          0.055   PREDICTED: hypothetical protein 
SIRT1                 0.050   sirtuin 1 isoform a 
TAF4                  0.044   TBP-associated factor 4 
PNMAL2                0.044   PNMA-like 2 
EWSR1                 0.044   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.044   Ewing sarcoma breakpoint region 1 isoform 1 
COL5A2                0.044   alpha 2 type V collagen preproprotein 
TCFL5                 0.039   transcription factor-like 5 protein 
DLEU7                 0.039   deleted in lymphocytic leukemia, 7 
LOC100288796          0.039   PREDICTED: hypothetical protein 
LOC100294403          0.039   PREDICTED: hypothetical protein 
LOC100288796          0.039   PREDICTED: hypothetical protein XP_002343710 
LOC388279             0.039   PREDICTED: hypothetical protein 
COL1A1                0.033   alpha 1 type I collagen preproprotein 
LOC100293052          0.033   PREDICTED: hypothetical protein 
LOC100290805          0.033   PREDICTED: hypothetical protein XP_002346730 
LOC100289002          0.033   PREDICTED: hypothetical protein XP_002342598 
LOC100290023          0.033   PREDICTED: hypothetical protein XP_002348147 
FLJ37078              0.033   hypothetical protein LOC222183 
C10orf114             0.033   hypothetical protein LOC399726 
DVL2                  0.028   dishevelled 2 
LOC100292592          0.028   PREDICTED: hypothetical protein 
LOC100289054          0.028   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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