Guide to the Human Genome
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Name: CENPF Sequence: fasta or formatted (3114aa) NCBI GI: 55770834
Description:

centromere protein F

Referenced in:

Centromere Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0        155           2
 C cysteine            1.8         55           1
 D aspartate           4.1        127           2
 E glutamate          15.3        476           3
 F phenylalanine       1.4         43           2
 G glycine             2.8         87           2
 H histidine           2.0         62           2
 I isoleucine          3.4        107           2
 K lysine             10.3        321           3
 L leucine            13.4        418           3
 M methionine          2.2         67           1
 N asparagine          5.0        157           2
 P proline             1.9         58           2
 Q glutamine           8.7        271           2
 R arginine            3.9        122           2
 S serine              8.9        278           3
 T threonine           4.5        140           2
 V valine              4.0        125           2
 W tryptophan          0.3          8           1
 Y tyrosine            1.2         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   centromere protein F 
GOLGB1                0.055   golgi autoantigen, golgin subfamily b, macrogolgin ...
AKAP9                 0.044   A-kinase anchor protein 9 isoform 3 
AKAP9                 0.044   A-kinase anchor protein 9 isoform 2 
GOLGA4                0.043   golgi autoantigen, golgin subfamily a, 4 
CEP250                0.040   centrosomal protein 2 
CEP290                0.037   centrosomal protein 290kDa 
CENPE                 0.036   centromere protein E 
EEA1                  0.031   early endosome antigen 1, 162kD 
CCDC88A               0.030   coiled-coil domain containing 88A isoform 2 
CCDC88A               0.030   coiled-coil domain containing 88A isoform 1 
CROCC                 0.029   ciliary rootlet coiled-coil 
MYH10                 0.029   myosin, heavy polypeptide 10, non-muscle 
TRIP11                0.028   thyroid hormone receptor interactor 11 
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.028   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
MYH13                 0.027   myosin, heavy polypeptide 13, skeletal muscle [Homo...
MYH3                  0.027   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH4                  0.027   myosin, heavy polypeptide 4, skeletal muscle 
GCC2                  0.027   GRIP and coiled-coil domain-containing 2 
MYH2                  0.027   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH2                  0.027   myosin, heavy chain 2, skeletal muscle, adult [Homo...
MYH1                  0.026   myosin, heavy chain 1, skeletal muscle, adult [Homo...
CCDC88C               0.026   DVL-binding protein DAPLE 
CCDC18                0.026   sarcoma antigen NY-SAR-41 
NUMA1                 0.026   nuclear mitotic apparatus protein 1 
TPR                   0.026   nuclear pore complex-associated protein TPR 
MYH7B                 0.026   myosin, heavy polypeptide 7B, cardiac muscle, beta ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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