Guide to the Human Genome
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Name: LOC100292286 Sequence: fasta or formatted (132aa) NCBI GI: 239754971
Description:

PREDICTED: similar to spermatogenesis and centriole associated 1

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         12           2
 C cysteine            0.8          1           1
 D aspartate           0.8          1           1
 E glutamate           9.8         13           2
 F phenylalanine       2.3          3           1
 G glycine            12.1         16           3
 H histidine           1.5          2           1
 I isoleucine          3.0          4           1
 K lysine              3.0          4           1
 L leucine            12.9         17           2
 M methionine          1.5          2           1
 N asparagine          3.0          4           1
 P proline             5.3          7           1
 Q glutamine           6.1          8           1
 R arginine           14.4         19           4
 S serine              6.8          9           2
 T threonine           0.8          1           1
 V valine              3.8          5           1
 W tryptophan          2.3          3           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to spermatogenesis and centriole... 
LOC100288424          1.000   PREDICTED: hypothetical protein XP_002342922 
SPATC1                0.158   spermatogenesis and centriole associated 1 isoform ...
SPATC1                0.158   spermatogenesis and centriole associated 1 isoform ...
FYCO1                 0.029   FYVE and coiled-coil domain containing 1 
RAX2                  0.029   retina and anterior neural fold homeobox 2 
TNRC18                0.029   trinucleotide repeat containing 18 
CREBZF                0.025   HCF-binding transcription factor Zhangfei 
LOC100293644          0.025   PREDICTED: hypothetical protein 
LOC100287563          0.025   PREDICTED: hypothetical protein 
LOC100287563          0.025   PREDICTED: hypothetical protein XP_002343733 
MYO5B                 0.025   myosin VB 
PTPRF                 0.021   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.021   protein tyrosine phosphatase, receptor type, F isof...
CENPF                 0.021   centromere protein F 
PBXIP1                0.021   pre-B-cell leukemia homeobox interacting protein 1 [...
LOC100292259          0.021   PREDICTED: hypothetical protein 
LOC100289480          0.021   PREDICTED: hypothetical protein 
LOC100289480          0.021   PREDICTED: hypothetical protein XP_002342365 
CCDC18                0.021   sarcoma antigen NY-SAR-41 
BZRAP1                0.021   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.021   peripheral benzodiazepine receptor-associated prote...
COL2A1                0.017   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.017   collagen, type II, alpha 1 isoform 2 precursor [Hom...
SPTBN1                0.017   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.017   spectrin, beta, non-erythrocytic 1 isoform 1 
SLTM                  0.017   modulator of estrogen induced transcription isoform ...
SLTM                  0.017   modulator of estrogen induced transcription isoform ...
DONSON                0.017   downstream neighbor of SON 
PLEC1                 0.017   plectin 1 isoform 11 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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