Guide to the Human Genome
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Name: PBXIP1 Sequence: fasta or formatted (731aa) NCBI GI: 19923830
Description:

pre-B-cell leukemia homeobox interacting protein 1

Referenced in:

B cells

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         51           2
 C cysteine            1.1          8           1
 D aspartate           6.4         47           3
 E glutamate          10.8         79           3
 F phenylalanine       2.5         18           2
 G glycine            10.8         79           2
 H histidine           2.7         20           5
 I isoleucine          1.0          7           1
 K lysine              5.3         39           2
 L leucine            10.8         79           3
 M methionine          1.2          9           1
 N asparagine          1.4         10           1
 P proline             6.7         49           2
 Q glutamine           7.9         58           2
 R arginine            7.5         55           4
 S serine              7.5         55           3
 T threonine           3.0         22           2
 V valine              4.2         31           2
 W tryptophan          1.8         13           2
 Y tyrosine            0.3          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   pre-B-cell leukemia homeobox interacting protein 1 [... 
CCPG1                 0.062   cell cycle progression 1 isoform 2 
CCPG1                 0.062   cell cycle progression 1 isoform 1 
LOC440243             0.020   PREDICTED: Putative golgin subfamily A member 6-lik...
LOC283767             0.020   golgi autoantigen, golgin subfamily a-like 
LOC727832             0.020   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.020   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC400352             0.019   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.019   PREDICTED: golgi autoantigen, golgin subfamily a-li...
PLEC1                 0.019   plectin 1 isoform 11 
PLEC1                 0.019   plectin 1 isoform 10 
PLEC1                 0.019   plectin 1 isoform 8 
PLEC1                 0.019   plectin 1 isoform 7 
PLEC1                 0.019   plectin 1 isoform 6 
PLEC1                 0.019   plectin 1 isoform 3 
PLEC1                 0.019   plectin 1 isoform 2 
PLEC1                 0.019   plectin 1 isoform 1 
CROCC                 0.018   ciliary rootlet coiled-coil 
LOC100133599          0.018   PREDICTED: hypothetical protein 
LOC100133758          0.017   PREDICTED: hypothetical protein, partial 
TCHH                  0.017   trichohyalin 
LOC100132816          0.017   PREDICTED: similar to Putative golgin subfamily A m...
EIF3A                 0.016   eukaryotic translation initiation factor 3, subunit 1...
RPGR                  0.016   retinitis pigmentosa GTPase regulator isoform C [Hom...
DEF6                  0.015   differentially expressed in FDCP 6 homolog 
LOC100286959          0.015   PREDICTED: hypothetical protein XP_002343921 
ITSN1                 0.014   intersectin 1 isoform ITSN-s 
ITSN1                 0.014   intersectin 1 isoform ITSN-l 
PPFIA3                0.014   PTPRF interacting protein alpha 3 
CCDC33                0.014   coiled-coil domain containing 33 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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