Guide to the Human Genome
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Name: SPTBN1 Sequence: fasta or formatted (2155aa) NCBI GI: 112382252
Description:

spectrin, beta, non-erythrocytic 1 isoform 2

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [2364aa] spectrin, beta, non-erythrocytic 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6        164           2
 C cysteine            0.6         12           1
 D aspartate           6.5        141           2
 E glutamate          11.5        248           4
 F phenylalanine       2.6         56           2
 G glycine             3.5         75           1
 H histidine           3.0         64           1
 I isoleucine          5.0        107           3
 K lysine              7.2        155           2
 L leucine            11.1        239           3
 M methionine          2.8         60           2
 N asparagine          3.9         84           2
 P proline             1.8         39           2
 Q glutamine           6.9        149           3
 R arginine            6.9        149           2
 S serine              6.0        129           3
 T threonine           4.5         98           2
 V valine              4.5         96           2
 W tryptophan          1.9         42           1
 Y tyrosine            2.2         48           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.972   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN2                0.642   spectrin, beta, non-erythrocytic 2 
SPTB                  0.607   spectrin beta isoform a 
SPTB                  0.607   spectrin beta isoform b 
SPTBN4                0.503   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
SPTBN5                0.213   spectrin, beta, non-erythrocytic 5 
SPTBN4                0.153   spectrin, beta, non-erythrocytic 4 isoform sigma5 [...
SPTAN1                0.138   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.138   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTA1                 0.129   spectrin, alpha, erythrocytic 1 
ACTN4                 0.100   actinin, alpha 4 
ACTN1                 0.099   actinin, alpha 1 isoform c 
ACTN1                 0.099   actinin, alpha 1 isoform a 
ACTN1                 0.099   actinin, alpha 1 isoform b 
ACTN3                 0.096   actinin, alpha 3 
ACTN2                 0.096   actinin, alpha 2 
PLEC1                 0.088   plectin 1 isoform 10 
PLEC1                 0.088   plectin 1 isoform 3 
PLEC1                 0.088   plectin 1 isoform 8 
PLEC1                 0.088   plectin 1 isoform 2 
PLEC1                 0.088   plectin 1 isoform 7 
PLEC1                 0.088   plectin 1 isoform 1 
PLEC1                 0.088   plectin 1 isoform 11 
PLEC1                 0.088   plectin 1 isoform 6 
MACF1                 0.079   microfilament and actin filament cross-linker protei...
LOC652460             0.074   PREDICTED: similar to plectin 1, partial 
DST                   0.067   dystonin isoform 4 
DST                   0.067   dystonin isoform 3 
DST                   0.067   dystonin isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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