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Search of human proteins with 239754876
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754876 PREDICTED: hypothetical protein [Homo sapiens]
(295 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754876 PREDICTED: hypothetical protein [Homo sapiens] 621 e-178
gi|239749414 PREDICTED: hypothetical protein [Homo sapiens] 621 e-178
gi|239743550 PREDICTED: hypothetical protein [Homo sapiens] 621 e-178
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho... 35 0.060
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho... 35 0.060
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho... 35 0.060
gi|93141049 collagen, type XII, alpha 1 short isoform precursor ... 34 0.13
gi|93141047 collagen, type XII, alpha 1 long isoform precursor [... 34 0.13
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 34 0.18
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 33 0.23
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens] 33 0.23
gi|154937344 complement component 1, q subcomponent-like 2 [Homo... 33 0.23
gi|11386161 alpha 2 type IX collagen [Homo sapiens] 33 0.30
gi|4557265 beta-1-adrenergic receptor [Homo sapiens] 33 0.39
gi|48762934 alpha 2 type I collagen [Homo sapiens] 33 0.39
gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens] 33 0.39
gi|239750773 PREDICTED: similar to hCG2003024 [Homo sapiens] 33 0.39
gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens] 33 0.39
gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens] 33 0.39
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 32 0.67
gi|145701025 multiple EGF-like-domains 8 [Homo sapiens] 32 0.67
gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens] 32 0.67
gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens] 32 0.67
gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens] 32 0.67
gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens] 32 0.67
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 32 0.67
gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens] 32 0.67
gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens] 32 0.67
gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens] 32 0.67
gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens] 32 0.67
>gi|239754876 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 621 bits (1602), Expect = e-178
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK 60
MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK
Sbjct: 1 MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK 60
Query: 61 TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV 120
TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV
Sbjct: 61 TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV 120
Query: 121 FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK 180
FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK
Sbjct: 121 FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK 180
Query: 181 IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA 240
IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA
Sbjct: 181 IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA 240
Query: 241 MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM 295
MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM
Sbjct: 241 MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM 295
>gi|239749414 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 621 bits (1602), Expect = e-178
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK 60
MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK
Sbjct: 1 MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK 60
Query: 61 TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV 120
TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV
Sbjct: 61 TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV 120
Query: 121 FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK 180
FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK
Sbjct: 121 FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK 180
Query: 181 IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA 240
IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA
Sbjct: 181 IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA 240
Query: 241 MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM 295
MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM
Sbjct: 241 MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM 295
>gi|239743550 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 621 bits (1602), Expect = e-178
Identities = 295/295 (100%), Positives = 295/295 (100%)
Query: 1 MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK 60
MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK
Sbjct: 1 MSMPLLRWRILNRRKFGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAK 60
Query: 61 TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV 120
TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV
Sbjct: 61 TARPGGGGNGRPGFSAESQWEARCPKSSTRLGMPFILFQLLTVMALAIMSFPGKDGFSSV 120
Query: 121 FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK 180
FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK
Sbjct: 121 FSATAEWTSTMNQVSAALGTRFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQK 180
Query: 181 IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA 240
IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA
Sbjct: 181 IHLHFCVLLRQLSEHPFLLPRPTLFHLVKLPGSFLHGRRLLHSTRTQLHLWPSPASAGPA 240
Query: 241 MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM 295
MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM
Sbjct: 241 MVDAAPSQAHFSCGSGGPSGAPVRHGERDRNAIFRPFRLWHPVAFPQAPRVLPVM 295
>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
sapiens]
Length = 1818
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFSAE 77
G T PPG R P RPG G PG G T R GG G+ P SA+
Sbjct: 472 GPTGPPGDPGDRGPPGRPGLPGADGLPGPPG-TMLMLPFRYGGDGSKGPTISAQ 524
Score = 31.6 bits (70), Expect = 0.87
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 17 GEKPQH--FGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCT-YCAKTARPGGGGN-GRP 72
GEK ++ G PPG R P G +G PG+VG + PG GN G P
Sbjct: 1219 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1278
Query: 73 G 73
G
Sbjct: 1279 G 1279
Score = 29.6 bits (65), Expect = 3.3
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGC--TYCAKTARPGGGGNGRPG 73
G+ PPG + P PG +RG PGA G K A+ G G PG
Sbjct: 1354 GQPGPPGPSGEAGP---PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPG 1402
Score = 29.3 bits (64), Expect = 4.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 19 KPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPGFS 75
+P G PPG P PG ++G PG G P G G G+PG +
Sbjct: 677 QPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA 735
Score = 28.9 bits (63), Expect = 5.6
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPG 73
G PPG K RPG RG PG G AK R G G PG
Sbjct: 577 GVQGPPGPTGKPGKRGRPGADGGRGMPGEPG----AKGDRGFDGLPGLPG 622
>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
sapiens]
Length = 1767
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFSAE 77
G T PPG R P RPG G PG G T R GG G+ P SA+
Sbjct: 421 GPTGPPGDPGDRGPPGRPGLPGADGLPGPPG-TMLMLPFRYGGDGSKGPTISAQ 473
Score = 31.6 bits (70), Expect = 0.87
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 17 GEKPQH--FGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCT-YCAKTARPGGGGN-GRP 72
GEK ++ G PPG R P G +G PG+VG + PG GN G P
Sbjct: 1168 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1227
Query: 73 G 73
G
Sbjct: 1228 G 1228
Score = 29.6 bits (65), Expect = 3.3
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGC--TYCAKTARPGGGGNGRPG 73
G+ PPG + P PG +RG PGA G K A+ G G PG
Sbjct: 1303 GQPGPPGPSGEAGP---PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPG 1351
Score = 29.3 bits (64), Expect = 4.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 19 KPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPGFS 75
+P G PPG P PG ++G PG G P G G G+PG +
Sbjct: 626 QPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA 684
Score = 28.9 bits (63), Expect = 5.6
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPG 73
G PPG K RPG RG PG G AK R G G PG
Sbjct: 526 GVQGPPGPTGKPGKRGRPGADGGRGMPGEPG----AKGDRGFDGLPGLPG 571
>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
sapiens]
Length = 1806
Score = 35.4 bits (80), Expect = 0.060
Identities = 22/54 (40%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFSAE 77
G T PPG R P RPG G PG G T R GG G+ P SA+
Sbjct: 460 GPTGPPGDPGDRGPPGRPGLPGADGLPGPPG-TMLMLPFRYGGDGSKGPTISAQ 512
Score = 31.6 bits (70), Expect = 0.87
Identities = 22/61 (36%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 17 GEKPQH--FGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCT-YCAKTARPGGGGN-GRP 72
GEK ++ G PPG R P G +G PG+VG + PG GN G P
Sbjct: 1207 GEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPP 1266
Query: 73 G 73
G
Sbjct: 1267 G 1267
Score = 29.6 bits (65), Expect = 3.3
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGC--TYCAKTARPGGGGNGRPG 73
G+ PPG + P PG +RG PGA G K A+ G G PG
Sbjct: 1342 GQPGPPGPSGEAGP---PGPPGKRGPPGAAGAEGRQGEKGAKGEAGAEGPPG 1390
Score = 29.3 bits (64), Expect = 4.3
Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 19 KPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPGFS 75
+P G PPG P PG ++G PG G P G G G+PG +
Sbjct: 665 QPGMAGVDGPPGPKGNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPGLA 723
Score = 28.9 bits (63), Expect = 5.6
Identities = 20/50 (40%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPG 73
G PPG K RPG RG PG G AK R G G PG
Sbjct: 565 GVQGPPGPTGKPGKRGRPGADGGRGMPGEPG----AKGDRGFDGLPGLPG 610
>gi|93141049 collagen, type XII, alpha 1 short isoform precursor [Homo
sapiens]
Length = 1899
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 20 PQHFGRTAPPGGDDKR---EPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPG 73
PQ RT PPG R P RPG RG PG G ++ A G G PG
Sbjct: 1841 PQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYPG 1897
>gi|93141047 collagen, type XII, alpha 1 long isoform precursor [Homo
sapiens]
Length = 3063
Score = 34.3 bits (77), Expect = 0.13
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 20 PQHFGRTAPPGGDDKR---EPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPG 73
PQ RT PPG R P RPG RG PG G ++ A G G PG
Sbjct: 3005 PQGESRTGPPGSTGSRGPPGPPGRPGNSGIRGPPGPPGYCDSSQCASIPYNGQGYPG 3061
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 33.9 bits (76), Expect = 0.18
Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 9/62 (14%)
Query: 17 GEKPQ-----HFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGR 71
GEK Q H G+ PPG D +R PG + G PG G R G GR
Sbjct: 560 GEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPGPRGLL----GPRGSPGPTGR 615
Query: 72 PG 73
PG
Sbjct: 616 PG 617
Score = 33.1 bits (74), Expect = 0.30
Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG----GGNGRP 72
GEK + G+T PG + +R P PG ERG PGA G +PG G +G P
Sbjct: 815 GEKGKS-GKTGQPGLEGERGP---PGSRGERGQPGATG--------QPGPKGDVGQDGAP 862
Query: 73 GFSAE 77
G E
Sbjct: 863 GIPGE 867
Score = 28.9 bits (63), Expect = 5.6
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPGFSAE 77
G P G + PH PG + G PGA G P G G +G PG E
Sbjct: 506 GAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARGLPGDTGPKGDRGFDGLPGLPGE 561
Score = 28.1 bits (61), Expect = 9.6
Identities = 19/52 (36%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPG 73
G PPG K P G +G PG G T P G G NG PG
Sbjct: 959 GELGPPGPLGKEGPAGLRGFPGPKGGPGDPGPTGLKGDKGPPGPVGANGSPG 1010
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 33.5 bits (75), Expect = 0.23
Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 11/64 (17%)
Query: 17 GEKPQ--HFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG-GGNGRPG 73
GEK + G+ PPG R P PG +G PG +G PG G G PG
Sbjct: 1237 GEKGETGDVGQMGPPGPPGPRGPSGAPGADGPQGPPGGIG--------NPGAVGEKGEPG 1288
Query: 74 FSAE 77
+ E
Sbjct: 1289 EAGE 1292
Score = 29.3 bits (64), Expect = 4.3
Identities = 19/60 (31%), Positives = 21/60 (35%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFSAESQ 79
P G T G +R P RPG G PG G GGG G G +Q
Sbjct: 483 PGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGPMVSAQ 542
>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
Length = 1466
Score = 33.5 bits (75), Expect = 0.23
Identities = 20/52 (38%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCT-YCAKTARPG-GGGNGRPG 73
G PPGG P G ERG+PG G + PG G NG PG
Sbjct: 840 GVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGSNGNPG 891
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 9/59 (15%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGN-GRPGFSAE 77
P G+ PPG + PG RG PG +G PG GN G PG + E
Sbjct: 545 PGSDGKPGPPGSQGESGRPGPPGPSGPRGQPGVMGF--------PGPKGNDGAPGKNGE 595
Score = 28.1 bits (61), Expect = 9.6
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG----GGGNGRPG 73
GR PGG R PG G PG G ++ RPG G G+PG
Sbjct: 525 GRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQ--GESGRPGPPGPSGPRGQPG 576
>gi|154937344 complement component 1, q subcomponent-like 2 [Homo
sapiens]
Length = 287
Score = 33.5 bits (75), Expect = 0.23
Identities = 26/80 (32%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 19 KPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFSAES 78
+P G PPG P PG + G PG G A TA G G G +S
Sbjct: 83 RPGKPGPRGPPGEPGPPGPRGPPGEKGDSGRPGLPGLQLTAGTASGVGVVGGGAGVGGDS 142
Query: 79 QWEARCPKSSTRLGMPFILF 98
+ E S+T G P I F
Sbjct: 143 EGEVTSALSATFSG-PKIAF 161
>gi|11386161 alpha 2 type IX collagen [Homo sapiens]
Length = 689
Score = 33.1 bits (74), Expect = 0.30
Identities = 21/52 (40%), Positives = 22/52 (42%), Gaps = 5/52 (9%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPG 73
G PPG K+ PH PG RG PG VG P G G G PG
Sbjct: 559 GPPGPPGYPGKQGPHGHPG---PRGVPGIVGAVGQIGNTGPKGKRGEKGDPG 607
Score = 29.6 bits (65), Expect = 3.3
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYC----AKTARPG-GGGNGRPG 73
G T PPG + R P R G + G+PG G T PG G +G PG
Sbjct: 259 GATGPPGEEGPRGPPGRAGEKGDEGSPGIRGPQGITGPKGATGPPGINGKDGTPG 313
>gi|4557265 beta-1-adrenergic receptor [Homo sapiens]
Length = 477
Score = 32.7 bits (73), Expect = 0.39
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 20/77 (25%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNG------ 70
G++P+ G A PG P PG S+ VG T A+ P G NG
Sbjct: 406 GDRPRASGCLARPG------PPPSPGAASDDDDDDVVGATPPARLLEPWAGCNGGAAADS 459
Query: 71 --------RPGFSAESQ 79
RPGF++ES+
Sbjct: 460 DSSLDEPCRPGFASESK 476
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.7 bits (73), Expect = 0.39
Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG-----GGNGRPGF 74
P G P G R P PG +G PG VG A + P G G G PG
Sbjct: 594 PGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAGPSGPSGLPGERGAAGIPGG 653
Query: 75 SAE 77
E
Sbjct: 654 KGE 656
Score = 31.2 bits (69), Expect = 1.1
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 2/61 (3%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPGFSAE 77
P GR PG D +PG ERG PG +G A P G G G+ G E
Sbjct: 921 PGEAGRDGNPGNDGPPGRDGQPGHKGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGE 980
Query: 78 S 78
+
Sbjct: 981 T 981
Score = 29.6 bits (65), Expect = 3.3
Identities = 29/85 (34%), Positives = 30/85 (35%), Gaps = 7/85 (8%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPG-CGSE-----RGTPGAVGCT-YCAKTARPGGGGNGRP 72
P GRT PPG P PG G E RG G VG T PG G P
Sbjct: 789 PGAAGRTGPPGPSGISGPPGPPGPAGKEGLRGPRGDQGPVGRTGEVGAVGPPGFAGEKGP 848
Query: 73 GFSAESQWEARCPKSSTRLGMPFIL 97
A + P LG P IL
Sbjct: 849 SGEAGTAGPPGTPGPQGLLGAPGIL 873
>gi|239754955 PREDICTED: similar to COL22A1 protein [Homo sapiens]
Length = 1073
Score = 32.7 bits (73), Expect = 0.39
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGG----NGRPGFSAE 77
G T PPG + H PG G PG VG + PG G G PG E
Sbjct: 377 GPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAP--GPSGPPGSVGAPGLRGTPGKDGE 432
Score = 28.5 bits (62), Expect = 7.4
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVG--CTYCAKTARPGGGGNGRPGF 74
P G T P G + P PG G+PG G T K ++ G G PGF
Sbjct: 752 PGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGF 808
Score = 28.1 bits (61), Expect = 9.6
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPG 73
G+ PPG K PG RG PG G T + P G G G PG
Sbjct: 696 GKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPG 747
>gi|239750773 PREDICTED: similar to hCG2003024 [Homo sapiens]
Length = 181
Score = 32.7 bits (73), Expect = 0.39
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 34 KREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFS 75
+REP H+P C RG GA+G T P G GR FS
Sbjct: 126 QREPRHKPPCRGVRGHQGALGTTEIG--TGPRSRGRGRFPFS 165
>gi|239745042 PREDICTED: similar to hCG2003024 [Homo sapiens]
Length = 181
Score = 32.7 bits (73), Expect = 0.39
Identities = 18/42 (42%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 34 KREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGNGRPGFS 75
+REP H+P C RG GA+G T P G GR FS
Sbjct: 126 QREPRHKPPCRGVRGHQGALGTTEIG--TGPRSRGRGRFPFS 165
>gi|40805823 collagen, type XXII, alpha 1 [Homo sapiens]
Length = 1626
Score = 32.7 bits (73), Expect = 0.39
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGG----NGRPGFSAE 77
G T PPG + H PG G PG VG + PG G G PG E
Sbjct: 895 GPTGPPGAKGQEGAHGAPGAAGNPGAPGHVGAP--GPSGPPGSVGAPGLRGTPGKDGE 950
Score = 30.0 bits (66), Expect = 2.5
Identities = 24/70 (34%), Positives = 26/70 (37%), Gaps = 12/70 (17%)
Query: 16 FGEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGGN------ 69
F KP G T PPG D P PG E G G G +PG G
Sbjct: 739 FPGKPGPPGPTGPPGKDGPNGPPGPPGTKGEPGERGEDGL-----PGKPGLRGEIGEQGL 793
Query: 70 -GRPGFSAES 78
GRPG E+
Sbjct: 794 AGRPGEKGEA 803
Score = 28.5 bits (62), Expect = 7.4
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 20 PQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVG--CTYCAKTARPGGGGNGRPGF 74
P G T P G + P PG G+PG G T K ++ G G PGF
Sbjct: 1305 PGKDGDTGPTGPQGPQGPRGPPGKNGSPGSPGEPGPSGTPGQKGSKGENGSPGLPGF 1361
Score = 28.1 bits (61), Expect = 9.6
Identities = 23/63 (36%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCT-YCAKTARPGGGGN-GRPGF 74
GEK G PPG D + PG E G PG VG PG G G PG
Sbjct: 530 GEKGS-LGLPGPPGRDGSKGMRGEPGELGEPGLPGEVGMRGPQGPPGLPGPPGRVGAPGL 588
Query: 75 SAE 77
E
Sbjct: 589 QGE 591
Score = 28.1 bits (61), Expect = 9.6
Identities = 19/52 (36%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 24 GRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGG--GGNGRPG 73
G+ PPG K PG RG PG G T + P G G G PG
Sbjct: 1249 GKPGPPGEPGKAGEPGLPGPEGARGPPGFKGHTGDSGAPGPRGESGAMGLPG 1300
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 32.0 bits (71), Expect = 0.67
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 17/87 (19%)
Query: 15 KFGEKPQHFGRTA------PPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPGGGG 68
K +KPQH+G+ A PGG K+ +P E+ + A+ GGG
Sbjct: 156 KSRKKPQHWGQKAATAGAKSPGGGGKKPGQEKPAATGEK-----------TRAAKSRGGG 204
Query: 69 NGRPGFSAESQWEARCPKSSTRLGMPF 95
+P + A+ P+ + G F
Sbjct: 205 GKKPRREKPAAAGAKNPQKAAAAGAKF 231
>gi|145701025 multiple EGF-like-domains 8 [Homo sapiens]
Length = 2778
Score = 32.0 bits (71), Expect = 0.67
Identities = 43/139 (30%), Positives = 57/139 (41%), Gaps = 27/139 (19%)
Query: 141 RFKHRMVAEQGLGRRENLKMDQPGSNAFSQRHKKMPLKQKIHLHFCVLLRQLSEHPFLLP 200
R ++ + +GLG+ + +QPGS F + KKM L + L ++S H P
Sbjct: 1661 RMRNVRGSSRGLGQ---VPGEQPGSWGFREVRKKMALWAAL-AGTGGFLEEISPH-LKEP 1715
Query: 201 RPTLFHLVKLPGS---FLHGRR---------LLHSTRTQLHLWPS---PASAGPAM---- 241
RP LFH L G L GR LL+ L P AS GP M
Sbjct: 1716 RPRLFHASALLGDTMVVLGGRSDPDEFSSDVLLYQVNCNAWLLPDLTRSASVGPPMEESV 1775
Query: 242 ---VDAAPSQAHFSCGSGG 257
V A S+ + S G GG
Sbjct: 1776 AHAVAAVGSRLYISGGFGG 1794
>gi|194294532 alpha 1 type XIII collagen isoform 20 [Homo sapiens]
Length = 717
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 482 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 535
Query: 76 AE 77
E
Sbjct: 536 GE 537
>gi|22027609 alpha 1 type XIII collagen isoform 19 [Homo sapiens]
Length = 610
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 431 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 484
Query: 76 AE 77
E
Sbjct: 485 GE 486
>gi|22027607 alpha 1 type XIII collagen isoform 18 [Homo sapiens]
Length = 655
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 420 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 473
Query: 76 AE 77
E
Sbjct: 474 GE 475
>gi|22027605 alpha 1 type XIII collagen isoform 17 [Homo sapiens]
Length = 657
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 422 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 475
Query: 76 AE 77
E
Sbjct: 476 GE 477
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 425 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 478
Query: 76 AE 77
E
Sbjct: 479 GE 480
>gi|22027601 alpha 1 type XIII collagen isoform 15 [Homo sapiens]
Length = 668
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 460 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 513
Query: 76 AE 77
E
Sbjct: 514 GE 515
>gi|22027599 alpha 1 type XIII collagen isoform 14 [Homo sapiens]
Length = 664
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 429 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 482
Query: 76 AE 77
E
Sbjct: 483 GE 484
>gi|22027597 alpha 1 type XIII collagen isoform 13 [Homo sapiens]
Length = 690
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 482 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 535
Query: 76 AE 77
E
Sbjct: 536 GE 537
>gi|22027595 alpha 1 type XIII collagen isoform 12 [Homo sapiens]
Length = 691
Score = 32.0 bits (71), Expect = 0.67
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 17 GEKPQHFGRTAPPGGDDKREPHHRPGCGSERGTPGAVGCTYCAKTARPG-GGGNGRPGFS 75
G+K + G PPG D ++ P +PG + G PG G K PG G NG PG
Sbjct: 482 GQKGE-IGLPGPPGHDGEKGPRGKPG---DMGPPGPQGPP--GKDGPPGVKGENGHPGSP 535
Query: 76 AE 77
E
Sbjct: 536 GE 537
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.137 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,297,479
Number of Sequences: 37866
Number of extensions: 791033
Number of successful extensions: 3588
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 2779
Number of HSP's gapped (non-prelim): 899
length of query: 295
length of database: 18,247,518
effective HSP length: 102
effective length of query: 193
effective length of database: 14,385,186
effective search space: 2776340898
effective search space used: 2776340898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.